Wall clock time and date at job start Tue Mar 31 2020 12:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35999 * 117.00168 * 2 1 4 4 C 1.38560 * 120.07259 * 0.02562 * 3 2 1 5 5 C 1.38243 * 119.99710 * 179.70036 * 4 3 2 6 6 C 1.38246 * 120.14781 * 0.55261 * 5 4 3 7 7 C 1.50703 * 119.92826 * 179.72248 * 6 5 4 8 8 C 1.53000 * 109.46912 * 269.72354 * 7 6 5 9 9 N 1.46901 * 109.46769 * 179.97438 * 8 7 6 10 10 C 1.46906 * 110.99793 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.46978 * 180.02562 * 10 9 8 12 12 H 1.08994 * 109.47607 * 54.99702 * 11 10 9 13 13 C 1.47206 * 109.47245 * 294.99931 * 11 10 9 14 14 N 9.57278 * 132.96176 * 165.89357 * 3 1 2 15 15 C 1.53001 * 109.46969 * 175.00329 * 11 10 9 16 16 C 1.50703 * 109.47012 * 185.00016 * 15 11 10 17 17 H 1.07998 * 119.99974 * 359.97438 * 16 15 11 18 18 C 1.37877 * 120.00187 * 179.97438 * 16 15 11 19 19 N 1.31520 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00185 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46960 * 59.99855 * 20 18 16 22 22 H 1.48496 * 109.46998 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47155 * 299.99692 * 20 18 16 24 24 C 1.38244 * 120.14849 * 359.44743 * 6 5 4 25 25 C 1.38571 * 119.99494 * 0.27344 * 24 6 5 26 26 O 1.35993 * 120.07224 * 179.97438 * 25 24 6 27 27 C 1.42902 * 117.00196 * 0.02562 * 26 25 24 28 28 H 1.08997 * 109.47240 * 59.99731 * 1 2 3 29 29 H 1.08994 * 109.47549 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47136 * 300.00073 * 1 2 3 31 31 H 1.07996 * 119.99848 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.92405 * 180.29146 * 5 4 3 33 33 H 1.09001 * 109.46980 * 149.72481 * 7 6 5 34 34 H 1.08992 * 109.47158 * 29.72587 * 7 6 5 35 35 H 1.09002 * 109.47398 * 300.00078 * 8 7 6 36 36 H 1.09001 * 109.47194 * 60.00258 * 8 7 6 37 37 H 1.00898 * 110.99877 * 56.04956 * 9 8 7 38 38 H 1.08995 * 109.47087 * 299.99901 * 10 9 8 39 39 H 1.09002 * 109.46903 * 59.99922 * 10 9 8 40 40 H 1.09004 * 109.46816 * 304.99383 * 15 11 10 41 41 H 1.08993 * 109.47518 * 65.00018 * 15 11 10 42 42 H 0.96999 * 120.00038 * 180.02562 * 19 18 16 43 43 H 1.07992 * 120.00670 * 180.25443 * 24 6 5 44 44 H 1.08998 * 109.47065 * 59.99432 * 27 26 25 45 45 H 1.08997 * 109.47485 * 179.97438 * 27 26 25 46 46 H 1.09003 * 109.46911 * 299.99718 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6057 0.0068 6 6 3.3030 3.6798 0.0010 7 6 3.9838 5.0243 0.0015 8 6 4.2141 5.4798 -1.4408 9 7 4.8772 6.7907 -1.4402 10 6 5.1144 7.2612 -2.8115 11 6 5.8053 8.6256 -2.7701 12 1 6.7135 8.5551 -2.1717 13 6 4.8979 9.6172 -2.1697 14 7 4.1983 10.3819 -1.7074 15 6 6.1644 9.0588 -4.1929 16 6 6.9528 10.3422 -4.1434 17 1 7.1750 10.8030 -3.1923 18 6 7.3903 10.9281 -5.3123 19 7 7.1200 10.3666 -6.4705 20 14 8.3669 12.5193 -5.2510 21 1 9.6110 12.3066 -4.4687 22 1 8.7165 12.9390 -6.6318 23 1 7.5498 13.5769 -4.6036 24 6 4.0604 2.5233 0.0005 25 6 3.4360 1.2863 0.0000 26 8 4.1795 0.1476 -0.0011 27 6 5.6003 0.3005 -0.0011 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2147 2.3196 0.0014 32 1 1.3343 4.5114 0.0120 33 1 4.9419 4.9461 0.5153 34 1 3.3540 5.7502 0.5157 35 1 4.8439 4.7538 -1.9550 36 1 3.2559 5.5580 -1.9545 37 1 5.7376 6.7604 -0.9141 38 1 5.7506 6.5479 -3.3354 39 1 4.1623 7.3513 -3.3345 40 1 6.7637 8.2825 -4.6687 41 1 5.2509 9.2155 -4.7665 42 1 7.4281 10.7786 -7.2929 43 1 5.1386 2.5839 0.0001 44 1 5.9067 0.8495 0.8892 45 1 6.0716 -0.6823 -0.0016 46 1 5.9065 0.8510 -0.8907 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000551357777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:35 Heat of formation + Delta-G solvation = -38.023203 kcal Electronic energy + Delta-G solvation = -25046.224170 eV Core-core repulsion = 21322.229729 eV Total energy + Delta-G solvation = -3723.994441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.85198 -38.72314 -37.97931 -37.14936 -35.38150 -33.71746 -32.58585 -31.10589 -30.61112 -28.82166 -27.55038 -27.21446 -25.86248 -23.29592 -22.48197 -22.29341 -21.75809 -21.10630 -18.69941 -17.33950 -17.18632 -16.92868 -16.41151 -16.35497 -15.53620 -15.24303 -15.12178 -15.02552 -14.77272 -14.56772 -14.38931 -13.83504 -13.69050 -13.19839 -13.00642 -12.81088 -12.49247 -12.40582 -12.25498 -12.06457 -11.93595 -11.70083 -11.50007 -11.48718 -11.35029 -11.25498 -11.09863 -10.97727 -10.93868 -10.68160 -10.53872 -10.24304 -9.55157 -9.25049 -8.96852 -8.46521 -8.33063 -8.01210 -6.10196 -4.13519 1.00188 1.16065 2.97465 2.98954 3.30559 3.34942 3.38545 3.40993 3.74873 3.84377 4.16381 4.40823 4.45911 4.63053 4.69842 4.82471 4.83235 4.85163 4.88508 4.92023 4.96954 5.11209 5.11875 5.16904 5.21453 5.22453 5.27763 5.35230 5.50650 5.56159 5.72621 5.85417 5.88026 5.96977 6.00309 6.03535 6.38026 6.39218 6.41572 6.48931 6.75189 7.07023 7.29262 7.41048 7.47015 7.52674 7.84802 8.22310 8.58902 8.91053 9.51892 11.00627 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.001939 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.915988 B =14433.553728 C =14917.273452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.091 3.909 4 C -0.170 4.170 5 C -0.111 4.111 6 C -0.073 4.073 7 C -0.077 4.077 8 C 0.066 3.934 9 N -0.695 5.695 10 C 0.067 3.933 11 C 0.009 3.991 12 H 0.099 0.901 13 C 0.255 3.745 14 N -0.479 5.479 15 C 0.031 3.969 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.168 4.168 25 C 0.100 3.900 26 O -0.309 6.309 27 C 0.026 3.974 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.031 0.969 36 H 0.073 0.927 37 H 0.340 0.660 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.026 0.974 42 H 0.263 0.737 43 H 0.135 0.865 44 H 0.055 0.945 45 H 0.099 0.901 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.047 -23.762 13.458 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.046 3.954 4 C -0.188 4.188 5 C -0.129 4.129 6 C -0.073 4.073 7 C -0.114 4.114 8 C -0.063 4.063 9 N -0.326 5.326 10 C -0.063 4.063 11 C -0.013 4.013 12 H 0.117 0.883 13 C -0.062 4.062 14 N -0.156 5.156 15 C -0.007 4.007 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.720 3.280 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.187 4.187 25 C 0.054 3.946 26 O -0.222 6.222 27 C -0.069 4.069 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.158 0.842 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.153 0.847 44 H 0.073 0.927 45 H 0.118 0.882 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.643 -22.632 14.023 28.317 hybrid contribution 1.526 0.354 -0.590 1.674 sum -8.117 -22.277 13.434 27.251 Atomic orbital electron populations 1.23054 0.78656 1.03899 1.01244 1.86159 1.20934 1.26018 1.89183 1.18247 0.89146 0.85215 1.02804 1.21060 0.99924 0.91477 1.06385 1.20815 0.93942 0.97163 1.00993 1.19578 0.93358 0.94612 0.99798 1.20551 1.00760 0.92648 0.97489 1.21894 0.99579 0.89335 0.95521 1.60506 1.30109 1.26816 1.15148 1.22063 1.00720 0.94791 0.88724 1.19216 0.93540 0.87788 1.00730 0.88323 1.28812 0.92899 0.92941 0.91505 1.80934 1.11543 1.11488 1.11625 1.19165 0.97583 0.97211 0.86754 1.21107 1.34728 1.07859 0.92811 0.92535 1.24963 0.96092 0.97510 0.95456 1.69931 1.45973 1.39667 0.97467 0.86642 0.80501 0.83793 0.77072 1.20069 1.21200 1.20215 1.20979 1.00341 0.90548 1.06827 1.18226 0.88227 0.86076 1.02028 1.86160 1.18708 1.28303 1.89073 1.23077 0.78588 1.03865 1.01394 0.92686 0.88290 0.92761 0.84802 0.85313 0.91053 0.89851 0.95087 0.90864 0.84178 0.93274 0.90504 0.94466 0.95558 0.92737 0.84733 0.92684 0.88225 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.31 10.28 -34.24 -0.35 -3.67 16 3 C 0.09 1.00 6.70 -39.12 -0.26 0.74 16 4 C -0.17 -1.57 9.04 -39.46 -0.36 -1.92 16 5 C -0.11 -1.04 9.69 -39.58 -0.38 -1.42 16 6 C -0.07 -0.70 5.13 -104.62 -0.54 -1.24 16 7 C -0.08 -0.71 5.60 -27.88 -0.16 -0.86 16 8 C 0.07 0.70 5.67 -3.82 -0.02 0.68 16 9 N -0.69 -8.64 6.20 -113.78 -0.71 -9.35 16 10 C 0.07 0.97 5.05 -3.82 -0.02 0.95 16 11 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 12 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 13 C 0.26 5.31 13.67 -20.79 -0.28 5.03 16 14 N -0.48 -10.88 18.53 42.11 0.78 -10.10 16 15 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 16 C -0.53 -13.97 8.60 -34.44 -0.30 -14.26 16 17 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 20 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.17 -1.62 8.69 -39.46 -0.34 -1.97 16 25 C 0.10 1.11 6.70 -39.12 -0.26 0.84 16 26 O -0.31 -3.38 10.28 -34.22 -0.35 -3.74 16 27 C 0.03 0.18 9.81 101.05 0.99 1.17 16 28 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.27 7.66 -51.93 -0.40 -0.12 16 31 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.34 3.73 8.73 -39.29 -0.34 3.38 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 44 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 45 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 LS Contribution 391.21 15.07 5.90 5.90 Total: -1.00 -32.78 391.21 -7.59 -40.38 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -7.20 Total: -1.95 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -1.38 Total: -8.97 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.81 Total: -44.20 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.70 Total: -7.40 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.78 -7.59 -40.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000551357777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.355 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds