Wall clock time and date at job start Tue Mar 31 2020 12:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35999 * 117.00168 * 2 1 4 4 C 1.38560 * 120.07259 * 0.02562 * 3 2 1 5 5 C 1.38243 * 119.99710 * 179.70036 * 4 3 2 6 6 C 1.38246 * 120.14781 * 0.55261 * 5 4 3 7 7 C 1.50703 * 119.92826 * 179.72248 * 6 5 4 8 8 C 1.53000 * 109.46912 * 269.72354 * 7 6 5 9 9 N 1.46901 * 109.46769 * 179.97438 * 8 7 6 10 10 C 1.46906 * 110.99793 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.46978 * 180.02562 * 10 9 8 12 12 H 1.08994 * 109.47607 * 54.99702 * 11 10 9 13 13 C 1.47206 * 109.47245 * 294.99931 * 11 10 9 14 14 N 9.57278 * 132.96176 * 165.89357 * 3 1 2 15 15 C 1.53001 * 109.46969 * 175.00329 * 11 10 9 16 16 C 1.50703 * 109.47012 * 185.00016 * 15 11 10 17 17 H 1.07998 * 119.99974 * 359.97438 * 16 15 11 18 18 C 1.37877 * 120.00187 * 179.97438 * 16 15 11 19 19 N 1.31520 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00185 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46960 * 59.99855 * 20 18 16 22 22 H 1.48496 * 109.46998 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47155 * 299.99692 * 20 18 16 24 24 C 1.38244 * 120.14849 * 359.44743 * 6 5 4 25 25 C 1.38571 * 119.99494 * 0.27344 * 24 6 5 26 26 O 1.35993 * 120.07224 * 179.97438 * 25 24 6 27 27 C 1.42902 * 117.00196 * 0.02562 * 26 25 24 28 28 H 1.08997 * 109.47240 * 59.99731 * 1 2 3 29 29 H 1.08994 * 109.47549 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47136 * 300.00073 * 1 2 3 31 31 H 1.07996 * 119.99848 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.92405 * 180.29146 * 5 4 3 33 33 H 1.09001 * 109.46980 * 149.72481 * 7 6 5 34 34 H 1.08992 * 109.47158 * 29.72587 * 7 6 5 35 35 H 1.09002 * 109.47398 * 300.00078 * 8 7 6 36 36 H 1.09001 * 109.47194 * 60.00258 * 8 7 6 37 37 H 1.00898 * 110.99877 * 56.04956 * 9 8 7 38 38 H 1.08995 * 109.47087 * 299.99901 * 10 9 8 39 39 H 1.09002 * 109.46903 * 59.99922 * 10 9 8 40 40 H 1.09004 * 109.46816 * 304.99383 * 15 11 10 41 41 H 1.08993 * 109.47518 * 65.00018 * 15 11 10 42 42 H 0.96999 * 120.00038 * 180.02562 * 19 18 16 43 43 H 1.07992 * 120.00670 * 180.25443 * 24 6 5 44 44 H 1.08998 * 109.47065 * 59.99432 * 27 26 25 45 45 H 1.08997 * 109.47485 * 179.97438 * 27 26 25 46 46 H 1.09003 * 109.46911 * 299.99718 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6057 0.0068 6 6 3.3030 3.6798 0.0010 7 6 3.9838 5.0243 0.0015 8 6 4.2141 5.4798 -1.4408 9 7 4.8772 6.7907 -1.4402 10 6 5.1144 7.2612 -2.8115 11 6 5.8053 8.6256 -2.7701 12 1 6.7135 8.5551 -2.1717 13 6 4.8979 9.6172 -2.1697 14 7 4.1983 10.3819 -1.7074 15 6 6.1644 9.0588 -4.1929 16 6 6.9528 10.3422 -4.1434 17 1 7.1750 10.8030 -3.1923 18 6 7.3903 10.9281 -5.3123 19 7 7.1200 10.3666 -6.4705 20 14 8.3669 12.5193 -5.2510 21 1 9.6110 12.3066 -4.4687 22 1 8.7165 12.9390 -6.6318 23 1 7.5498 13.5769 -4.6036 24 6 4.0604 2.5233 0.0005 25 6 3.4360 1.2863 0.0000 26 8 4.1795 0.1476 -0.0011 27 6 5.6003 0.3005 -0.0011 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2147 2.3196 0.0014 32 1 1.3343 4.5114 0.0120 33 1 4.9419 4.9461 0.5153 34 1 3.3540 5.7502 0.5157 35 1 4.8439 4.7538 -1.9550 36 1 3.2559 5.5580 -1.9545 37 1 5.7376 6.7604 -0.9141 38 1 5.7506 6.5479 -3.3354 39 1 4.1623 7.3513 -3.3345 40 1 6.7637 8.2825 -4.6687 41 1 5.2509 9.2155 -4.7665 42 1 7.4281 10.7786 -7.2929 43 1 5.1386 2.5839 0.0001 44 1 5.9067 0.8495 0.8892 45 1 6.0716 -0.6823 -0.0016 46 1 5.9065 0.8510 -0.8907 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000551357777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:34 Heat of formation + Delta-G solvation = -57.929132 kcal Electronic energy + Delta-G solvation = -25047.087356 eV Core-core repulsion = 21322.229729 eV Total energy + Delta-G solvation = -3724.857627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.53701 -39.39644 -38.98158 -38.27087 -36.65699 -35.45849 -33.97262 -32.37221 -31.28652 -29.71765 -28.32549 -28.06485 -27.08688 -24.55985 -23.46409 -23.33761 -23.09300 -21.87822 -19.38294 -18.62726 -18.33235 -17.99823 -17.70330 -17.01370 -16.65369 -16.25065 -16.12666 -15.90227 -15.68704 -15.61299 -15.35808 -14.96288 -14.68779 -14.34556 -14.13072 -14.02686 -13.75758 -13.60230 -13.33520 -13.11501 -13.00343 -12.88275 -12.82553 -12.71197 -12.45135 -12.38487 -12.11497 -12.05884 -12.00283 -11.89937 -11.77008 -11.67874 -11.36116 -11.10280 -10.54162 -9.66862 -9.30496 -8.73902 -8.18528 -6.26779 0.29970 0.42737 1.41815 1.43667 1.50572 2.10212 2.16815 2.37868 2.38452 2.42309 2.68538 3.16536 3.21610 3.38787 3.80959 3.96100 4.08675 4.11905 4.23979 4.32100 4.32883 4.40554 4.40773 4.41975 4.44071 4.48475 4.51925 4.69139 4.74250 4.75016 4.77201 4.79727 4.85443 5.03106 5.07885 5.17289 5.24276 5.30753 5.48072 5.63425 5.68029 5.74094 5.80243 6.04224 6.12379 6.22569 6.58281 6.63175 6.84662 6.95748 7.41722 8.92115 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.001939 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.915988 B =14433.553728 C =14917.273452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.072 3.928 4 C -0.170 4.170 5 C -0.118 4.118 6 C -0.079 4.079 7 C -0.067 4.067 8 C 0.070 3.930 9 N -0.701 5.701 10 C 0.079 3.921 11 C 0.020 3.980 12 H 0.122 0.878 13 C 0.266 3.734 14 N -0.515 5.515 15 C 0.037 3.963 16 C -0.539 4.539 17 H 0.055 0.945 18 C 0.009 3.991 19 N -0.924 5.924 20 Si 0.949 3.051 21 H -0.262 1.262 22 H -0.283 1.283 23 H -0.282 1.282 24 C -0.168 4.168 25 C 0.079 3.921 26 O -0.333 6.333 27 C 0.018 3.982 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.065 0.935 31 H 0.154 0.846 32 H 0.140 0.860 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.352 0.648 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.036 0.964 41 H -0.001 1.001 42 H 0.264 0.736 43 H 0.151 0.849 44 H 0.065 0.935 45 H 0.116 0.884 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.444 -24.205 14.414 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.027 3.973 4 C -0.188 4.188 5 C -0.137 4.137 6 C -0.080 4.080 7 C -0.105 4.105 8 C -0.059 4.059 9 N -0.333 5.333 10 C -0.051 4.051 11 C -0.002 4.002 12 H 0.140 0.860 13 C -0.050 4.050 14 N -0.193 5.193 15 C -0.002 4.002 16 C -0.577 4.577 17 H 0.074 0.926 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.775 3.225 21 H -0.186 1.186 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.187 4.187 25 C 0.034 3.966 26 O -0.247 6.247 27 C -0.076 4.076 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.083 0.917 31 H 0.172 0.828 32 H 0.158 0.842 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.171 0.829 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.017 0.983 42 H 0.073 0.927 43 H 0.169 0.831 44 H 0.084 0.916 45 H 0.134 0.866 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.034 -23.084 14.999 28.973 hybrid contribution 1.302 0.439 -0.878 1.631 sum -7.731 -22.644 14.122 27.784 Atomic orbital electron populations 1.23318 0.76708 1.05399 1.02164 1.86119 1.23114 1.26324 1.89307 1.18569 0.89617 0.85804 1.03343 1.21292 1.00964 0.90937 1.05655 1.21047 0.94208 0.97665 1.00730 1.19675 0.93579 0.94728 1.00022 1.20449 1.01333 0.92164 0.96528 1.21867 0.99014 0.88483 0.96495 1.60415 1.30944 1.28104 1.13842 1.21844 1.00118 0.92983 0.90192 1.19186 0.94417 0.88814 0.97737 0.85985 1.29333 0.92401 0.92552 0.90758 1.80935 1.12901 1.12577 1.12855 1.18995 0.95771 0.96009 0.89428 1.21542 1.34471 1.09040 0.92634 0.92638 1.25737 0.97314 1.00514 0.95384 1.70030 1.47269 1.41119 0.97970 0.85740 0.79548 0.80020 0.77219 1.18643 1.20848 1.20743 1.21151 1.01211 0.90047 1.06267 1.18533 0.88696 0.86622 1.02764 1.86122 1.20558 1.28812 1.89241 1.23319 0.76833 1.05264 1.02173 0.91857 0.86635 0.91653 0.82826 0.84250 0.89692 0.90302 0.94278 0.91821 0.82899 0.91572 0.91518 0.94615 0.98276 0.92748 0.83126 0.91645 0.86617 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.11 10.28 -79.67 -0.82 -7.93 16 3 C 0.07 1.55 6.70 22.57 0.15 1.70 16 4 C -0.17 -2.98 9.04 22.35 0.20 -2.77 16 5 C -0.12 -2.07 9.69 22.27 0.22 -1.86 16 6 C -0.08 -1.41 5.13 -19.86 -0.10 -1.51 16 7 C -0.07 -1.09 5.60 29.85 0.17 -0.93 16 8 C 0.07 1.34 5.67 86.30 0.49 1.83 16 9 N -0.70 -15.78 6.20 -513.88 -3.19 -18.97 16 10 C 0.08 2.13 5.05 86.30 0.44 2.57 16 11 C 0.02 0.70 2.35 -12.60 -0.03 0.67 16 12 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 13 C 0.27 10.79 13.67 89.46 1.22 12.01 16 14 N -0.52 -23.10 18.53 19.99 0.37 -22.73 16 15 C 0.04 1.67 4.42 29.85 0.13 1.80 16 16 C -0.54 -28.25 8.60 25.60 0.22 -28.03 16 17 H 0.06 2.86 7.59 -2.91 -0.02 2.84 16 18 C 0.01 0.51 5.46 84.65 0.46 0.97 16 19 N -0.92 -52.93 13.29 21.45 0.28 -52.65 16 20 Si 0.95 43.19 29.54 68.60 2.03 45.22 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 C -0.17 -3.03 8.69 22.35 0.19 -2.84 16 25 C 0.08 1.72 6.70 22.57 0.15 1.87 16 26 O -0.33 -7.22 10.28 -79.61 -0.82 -8.04 16 27 C 0.02 0.23 9.81 113.37 1.11 1.34 16 28 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 29 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 31 H 0.15 1.90 6.30 -2.91 -0.02 1.88 16 32 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 34 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 35 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.35 6.63 8.73 -89.70 -0.78 5.85 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 43 H 0.15 2.06 6.30 -2.91 -0.02 2.05 16 44 H 0.06 0.65 7.66 -2.39 -0.02 0.64 16 45 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 Total: -1.00 -70.09 391.21 4.19 -65.89 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.20 Total: 11.04 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 6.14 Total: -11.83 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -2.53 Total: -94.35 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -1.64 Total: -15.97 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -70.09 4.19 -65.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000551357777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.966 kcal (2) G-P(sol) polarization free energy of solvation -70.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds