Wall clock time and date at job start Tue Mar 31 2020 12:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35896 * 116.99801 * 2 1 4 4 C 1.38796 * 120.02626 * 0.02562 * 3 2 1 5 5 C 1.38159 * 120.05154 * 179.71154 * 4 3 2 6 6 C 1.38192 * 120.11122 * 0.54662 * 5 4 3 7 7 C 1.50700 * 119.97317 * 179.73167 * 6 5 4 8 8 C 1.53004 * 109.46798 * 264.72294 * 7 6 5 9 9 N 1.46900 * 109.47074 * 180.02562 * 8 7 6 10 10 C 1.46904 * 110.99779 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.46858 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47753 * 305.00128 * 11 10 9 13 13 C 1.47204 * 109.47042 * 64.99895 * 11 10 9 14 14 N 9.57481 * 159.88499 * 152.73826 * 3 1 2 15 15 C 1.52996 * 109.47153 * 184.99851 * 11 10 9 16 16 C 1.50702 * 109.47159 * 175.00123 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 C 1.38750 * 120.05463 * 359.45154 * 6 5 4 25 25 O 1.35891 * 120.03034 * 180.29916 * 24 6 5 26 26 C 1.42907 * 117.00310 * 180.02562 * 25 24 6 27 27 C 1.38612 * 120.03091 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47317 * 300.00020 * 1 2 3 29 29 H 1.08992 * 109.47099 * 60.00930 * 1 2 3 30 30 H 1.09007 * 109.46757 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.97204 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.94442 * 180.29590 * 5 4 3 33 33 H 1.08998 * 109.47072 * 144.72836 * 7 6 5 34 34 H 1.08998 * 109.47245 * 24.71989 * 7 6 5 35 35 H 1.09003 * 109.47140 * 60.00064 * 8 7 6 36 36 H 1.09004 * 109.47248 * 300.00216 * 8 7 6 37 37 H 1.00899 * 110.99585 * 303.95295 * 9 8 7 38 38 H 1.08997 * 109.46933 * 59.99775 * 10 9 8 39 39 H 1.08996 * 109.47325 * 299.99917 * 10 9 8 40 40 H 1.09004 * 109.47066 * 55.00326 * 15 11 10 41 41 H 1.08994 * 109.47405 * 295.00156 * 15 11 10 42 42 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.47446 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.46896 * 299.99954 * 26 25 24 45 45 H 1.09001 * 109.46496 * 59.99860 * 26 25 24 46 46 H 1.07999 * 120.04948 * 0.03373 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3752 0.0005 5 6 1.9171 3.6065 0.0066 6 6 3.2970 3.6822 0.0007 7 6 3.9772 5.0270 0.0011 8 6 4.3194 5.4258 -1.4358 9 7 4.9831 6.7364 -1.4354 10 6 5.3266 7.1529 -2.8016 11 6 6.0139 8.5192 -2.7605 12 1 5.3762 9.2312 -2.2365 13 6 7.3001 8.4005 -2.0544 14 7 8.2924 8.3090 -1.5083 15 6 6.2595 9.0097 -4.1887 16 6 6.8236 10.4066 -4.1501 17 1 6.9906 10.8956 -3.2017 18 6 7.1323 11.0582 -5.3254 19 7 7.6296 12.2752 -5.2915 20 14 6.8440 10.2123 -6.9658 21 1 5.4728 10.5186 -7.4464 22 1 7.8365 10.7016 -7.9562 23 1 6.9936 8.7443 -6.7988 24 6 4.0566 2.5211 0.0002 25 8 5.4134 2.5962 0.0005 26 6 6.1316 1.3607 -0.0006 27 6 3.4301 1.2842 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5136 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2120 2.3186 0.0014 32 1 1.3276 4.5114 0.0118 33 1 4.8925 4.9709 0.5904 34 1 3.3102 5.7714 0.4358 35 1 3.4041 5.4818 -2.0251 36 1 4.9864 4.6813 -1.8705 37 1 4.4112 7.4311 -0.9789 38 1 4.4181 7.2214 -3.3998 39 1 6.0001 6.4203 -3.2463 40 1 5.3184 9.0130 -4.7387 41 1 6.9676 8.3456 -4.6843 42 1 7.8464 12.7337 -6.1184 43 1 7.2026 1.5629 -0.0007 44 1 5.8698 0.7875 0.8887 45 1 5.8700 0.7893 -0.8913 46 1 4.0196 0.3793 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554552122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:38 Heat of formation + Delta-G solvation = -34.481156 kcal Electronic energy + Delta-G solvation = -25336.538260 eV Core-core repulsion = 21612.697413 eV Total energy + Delta-G solvation = -3723.840846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87661 -39.29624 -37.63112 -36.96047 -35.39549 -33.72916 -32.63202 -31.36073 -30.65272 -28.77077 -27.61124 -27.42540 -26.08118 -23.23273 -22.48127 -22.29916 -21.43247 -21.04267 -18.98867 -17.24988 -17.06165 -16.82942 -16.54979 -16.29072 -15.92004 -15.78757 -15.23582 -15.02232 -14.68039 -14.41119 -14.14931 -13.69894 -13.64346 -13.18560 -13.11565 -13.00991 -12.67423 -12.40695 -12.27811 -12.18060 -12.04410 -11.86798 -11.66912 -11.56845 -11.32598 -11.22321 -11.19503 -10.89177 -10.81637 -10.71626 -10.37880 -9.90496 -9.71822 -9.29827 -8.90032 -8.59801 -8.29564 -8.20029 -6.08619 -4.08959 1.03618 1.12447 2.77829 3.07780 3.27185 3.36186 3.37652 3.39416 3.76069 3.84517 4.23187 4.40189 4.41828 4.63713 4.67614 4.72355 4.73630 4.83841 4.89469 4.90052 5.00845 5.02657 5.13477 5.23432 5.26212 5.27375 5.29840 5.31497 5.49636 5.61462 5.70848 5.76864 5.92898 5.94649 6.05062 6.07437 6.27798 6.32350 6.33442 6.35898 6.90973 6.95184 7.10009 7.13840 7.16261 7.51672 7.66360 8.43143 8.60853 8.95411 9.51338 11.04493 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019688 B = 0.002189 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.876964 B =12788.351512 C =13309.790053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.159 3.841 4 C -0.244 4.244 5 C -0.039 4.039 6 C -0.144 4.144 7 C -0.066 4.066 8 C 0.068 3.932 9 N -0.693 5.693 10 C 0.065 3.935 11 C 0.020 3.980 12 H 0.104 0.896 13 C 0.253 3.747 14 N -0.471 5.471 15 C -0.005 4.005 16 C -0.527 4.527 17 H 0.074 0.926 18 C 0.070 3.930 19 N -0.897 5.897 20 Si 0.878 3.122 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.264 1.264 24 C 0.172 3.828 25 O -0.302 6.302 26 C 0.025 3.975 27 C -0.243 4.243 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.072 0.928 37 H 0.341 0.659 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.032 0.968 41 H 0.025 0.975 42 H 0.264 0.736 43 H 0.102 0.898 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.073 -25.907 10.744 32.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.113 3.887 4 C -0.263 4.263 5 C -0.058 4.058 6 C -0.146 4.146 7 C -0.103 4.103 8 C -0.061 4.061 9 N -0.324 5.324 10 C -0.065 4.065 11 C -0.002 4.002 12 H 0.122 0.878 13 C -0.065 4.065 14 N -0.148 5.148 15 C -0.044 4.044 16 C -0.565 4.565 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.535 5.535 20 Si 0.705 3.295 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.188 1.188 24 C 0.125 3.875 25 O -0.214 6.214 26 C -0.070 4.070 27 C -0.262 4.262 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.159 0.841 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.121 0.879 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.659 -26.189 11.583 32.170 hybrid contribution -1.637 -0.218 -1.545 2.261 sum -16.295 -26.406 10.038 32.613 Atomic orbital electron populations 1.23071 0.78130 1.03947 1.01580 1.86047 1.21602 1.27060 1.88504 1.18653 0.91511 0.84168 0.94326 1.21110 1.00029 0.92133 1.13000 1.20690 0.92854 0.97277 0.94944 1.19147 0.92672 0.93721 1.09025 1.20328 1.00689 0.91827 0.97482 1.21879 0.96751 0.91698 0.95745 1.60464 1.49047 1.04293 1.18553 1.22074 0.99255 0.96128 0.89050 1.18950 0.86910 0.96335 0.98029 0.87785 1.28704 0.94243 0.91534 0.91974 1.81005 1.12176 1.10190 1.11412 1.19637 0.97768 0.97800 0.89237 1.21042 1.42857 0.97614 0.94952 0.90757 1.25002 0.94369 0.94672 0.99161 1.69907 1.43450 1.12324 1.27855 0.86815 0.78247 0.80583 0.83903 1.20089 1.21332 1.18835 1.18535 0.82767 0.92471 0.93703 1.86189 1.14859 1.32490 1.87859 1.23117 0.97097 0.85439 1.01356 1.20360 0.92684 0.97549 1.15641 0.92505 0.92453 0.88242 0.85391 0.84971 0.89756 0.91258 0.95381 0.90927 0.84124 0.93409 0.90566 0.94975 0.95655 0.92598 0.87924 0.92598 0.92515 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.85 10.49 -19.41 -0.20 -3.05 16 3 C 0.16 1.54 6.68 -39.24 -0.26 1.28 16 4 C -0.24 -2.08 9.04 -39.40 -0.36 -2.43 16 5 C -0.04 -0.35 9.67 -39.63 -0.38 -0.73 16 6 C -0.14 -1.49 5.15 -104.45 -0.54 -2.02 16 7 C -0.07 -0.68 5.33 -27.88 -0.15 -0.83 16 8 C 0.07 0.78 5.67 -3.82 -0.02 0.76 16 9 N -0.69 -8.96 6.20 -113.78 -0.71 -9.67 16 10 C 0.06 0.93 5.05 -3.82 -0.02 0.91 16 11 C 0.02 0.35 2.35 -93.41 -0.22 0.13 16 12 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 13 C 0.25 5.35 13.67 -20.75 -0.28 5.07 16 14 N -0.47 -10.98 18.54 42.17 0.78 -10.20 16 15 C -0.01 -0.12 3.49 -27.88 -0.10 -0.21 16 16 C -0.53 -14.31 9.15 -34.44 -0.32 -14.62 16 17 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 19 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 20 Si 0.88 20.81 27.47 -169.99 -4.67 16.14 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 24 C 0.17 1.85 6.66 -39.24 -0.26 1.59 16 25 O -0.30 -3.31 9.63 -19.40 -0.19 -3.50 16 26 C 0.02 0.18 9.81 101.05 0.99 1.18 16 27 C -0.24 -2.43 8.97 -39.29 -0.35 -2.79 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.13 0.80 6.29 -52.49 -0.33 0.47 16 32 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 33 H 0.08 1.02 7.69 -51.93 -0.40 0.62 16 34 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.34 3.87 8.73 -39.29 -0.34 3.53 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.03 0.64 7.58 -51.93 -0.39 0.25 16 41 H 0.03 0.56 7.19 -51.93 -0.37 0.19 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 45 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 46 H 0.14 1.16 6.30 -52.49 -0.33 0.83 16 LS Contribution 386.67 15.07 5.83 5.83 Total: -1.00 -33.92 386.67 -6.90 -40.82 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.14 Total: -0.19 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -1.37 Total: -9.71 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.85 Total: -46.34 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.39 Total: -6.54 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.92 -6.90 -40.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554552122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.337 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds