Wall clock time and date at job start Tue Mar 31 2020 12:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35896 * 116.99801 * 2 1 4 4 C 1.38796 * 120.02626 * 0.02562 * 3 2 1 5 5 C 1.38159 * 120.05154 * 179.71154 * 4 3 2 6 6 C 1.38192 * 120.11122 * 0.54662 * 5 4 3 7 7 C 1.50700 * 119.97317 * 179.73167 * 6 5 4 8 8 C 1.53004 * 109.46798 * 264.72294 * 7 6 5 9 9 N 1.46900 * 109.47074 * 180.02562 * 8 7 6 10 10 C 1.46904 * 110.99779 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.46858 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47753 * 305.00128 * 11 10 9 13 13 C 1.47204 * 109.47042 * 64.99895 * 11 10 9 14 14 N 9.57481 * 159.88499 * 152.73826 * 3 1 2 15 15 C 1.52996 * 109.47153 * 184.99851 * 11 10 9 16 16 C 1.50702 * 109.47159 * 175.00123 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 C 1.38750 * 120.05463 * 359.45154 * 6 5 4 25 25 O 1.35891 * 120.03034 * 180.29916 * 24 6 5 26 26 C 1.42907 * 117.00310 * 180.02562 * 25 24 6 27 27 C 1.38612 * 120.03091 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47317 * 300.00020 * 1 2 3 29 29 H 1.08992 * 109.47099 * 60.00930 * 1 2 3 30 30 H 1.09007 * 109.46757 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.97204 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.94442 * 180.29590 * 5 4 3 33 33 H 1.08998 * 109.47072 * 144.72836 * 7 6 5 34 34 H 1.08998 * 109.47245 * 24.71989 * 7 6 5 35 35 H 1.09003 * 109.47140 * 60.00064 * 8 7 6 36 36 H 1.09004 * 109.47248 * 300.00216 * 8 7 6 37 37 H 1.00899 * 110.99585 * 303.95295 * 9 8 7 38 38 H 1.08997 * 109.46933 * 59.99775 * 10 9 8 39 39 H 1.08996 * 109.47325 * 299.99917 * 10 9 8 40 40 H 1.09004 * 109.47066 * 55.00326 * 15 11 10 41 41 H 1.08994 * 109.47405 * 295.00156 * 15 11 10 42 42 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.47446 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.46896 * 299.99954 * 26 25 24 45 45 H 1.09001 * 109.46496 * 59.99860 * 26 25 24 46 46 H 1.07999 * 120.04948 * 0.03373 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3752 0.0005 5 6 1.9171 3.6065 0.0066 6 6 3.2970 3.6822 0.0007 7 6 3.9772 5.0270 0.0011 8 6 4.3194 5.4258 -1.4358 9 7 4.9831 6.7364 -1.4354 10 6 5.3266 7.1529 -2.8016 11 6 6.0139 8.5192 -2.7605 12 1 5.3762 9.2312 -2.2365 13 6 7.3001 8.4005 -2.0544 14 7 8.2924 8.3090 -1.5083 15 6 6.2595 9.0097 -4.1887 16 6 6.8236 10.4066 -4.1501 17 1 6.9906 10.8956 -3.2017 18 6 7.1323 11.0582 -5.3254 19 7 7.6296 12.2752 -5.2915 20 14 6.8440 10.2123 -6.9658 21 1 5.4728 10.5186 -7.4464 22 1 7.8365 10.7016 -7.9562 23 1 6.9936 8.7443 -6.7988 24 6 4.0566 2.5211 0.0002 25 8 5.4134 2.5962 0.0005 26 6 6.1316 1.3607 -0.0006 27 6 3.4301 1.2842 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5136 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2120 2.3186 0.0014 32 1 1.3276 4.5114 0.0118 33 1 4.8925 4.9709 0.5904 34 1 3.3102 5.7714 0.4358 35 1 3.4041 5.4818 -2.0251 36 1 4.9864 4.6813 -1.8705 37 1 4.4112 7.4311 -0.9789 38 1 4.4181 7.2214 -3.3998 39 1 6.0001 6.4203 -3.2463 40 1 5.3184 9.0130 -4.7387 41 1 6.9676 8.3456 -4.6843 42 1 7.8464 12.7337 -6.1184 43 1 7.2026 1.5629 -0.0007 44 1 5.8698 0.7875 0.8887 45 1 5.8700 0.7893 -0.8913 46 1 4.0196 0.3793 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554552122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:38 Heat of formation + Delta-G solvation = -57.221702 kcal Electronic energy + Delta-G solvation = -25337.524364 eV Core-core repulsion = 21612.697413 eV Total energy + Delta-G solvation = -3724.826950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.53571 -39.92898 -38.87735 -37.81536 -36.66761 -35.43175 -34.10562 -32.65371 -31.34454 -29.75079 -28.46232 -28.10914 -27.19533 -24.36836 -23.40381 -23.19821 -23.03716 -21.84493 -19.61190 -18.89223 -18.52458 -17.86770 -17.18799 -16.92679 -16.70173 -16.41052 -16.34007 -16.22345 -15.67420 -15.57272 -15.32734 -14.91669 -14.64090 -14.35677 -14.27440 -13.97532 -13.85651 -13.70819 -13.36871 -13.22387 -13.10922 -12.93048 -12.82957 -12.67382 -12.35644 -12.32862 -12.21716 -12.08971 -11.91763 -11.70941 -11.64467 -11.53401 -11.38661 -11.22800 -10.71655 -9.57964 -9.25538 -8.89599 -8.23346 -6.28654 0.36095 0.43331 1.42871 1.46440 1.56638 2.08162 2.15448 2.21885 2.42133 2.48336 2.70395 3.12519 3.23294 3.37512 3.80628 4.02957 4.07707 4.15632 4.22868 4.25329 4.34132 4.35971 4.38556 4.41571 4.46503 4.50996 4.58361 4.64813 4.71975 4.73175 4.77273 4.81122 4.83005 4.94801 5.02217 5.22445 5.25730 5.28911 5.38827 5.47699 5.58216 5.65296 5.67671 6.11183 6.28488 6.30908 6.48578 6.61588 6.78965 6.93611 7.35570 8.93527 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019688 B = 0.002189 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.876964 B =12788.351512 C =13309.790053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.149 3.851 4 C -0.243 4.243 5 C -0.038 4.038 6 C -0.161 4.161 7 C -0.057 4.057 8 C 0.076 3.924 9 N -0.706 5.706 10 C 0.077 3.923 11 C 0.025 3.975 12 H 0.120 0.880 13 C 0.262 3.738 14 N -0.518 5.518 15 C -0.003 4.003 16 C -0.530 4.530 17 H 0.030 0.970 18 C 0.001 3.999 19 N -0.954 5.954 20 Si 0.949 3.051 21 H -0.256 1.256 22 H -0.296 1.296 23 H -0.239 1.239 24 C 0.156 3.844 25 O -0.325 6.325 26 C 0.019 3.981 27 C -0.256 4.256 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.351 0.649 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.024 0.976 42 H 0.264 0.736 43 H 0.111 0.889 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.056 -27.881 9.806 35.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.104 3.896 4 C -0.262 4.262 5 C -0.055 4.055 6 C -0.162 4.162 7 C -0.095 4.095 8 C -0.052 4.052 9 N -0.338 5.338 10 C -0.053 4.053 11 C 0.003 3.997 12 H 0.137 0.863 13 C -0.054 4.054 14 N -0.195 5.195 15 C -0.042 4.042 16 C -0.568 4.568 17 H 0.048 0.952 18 C -0.195 4.195 19 N -0.595 5.595 20 Si 0.772 3.228 21 H -0.180 1.180 22 H -0.222 1.222 23 H -0.162 1.162 24 C 0.110 3.890 25 O -0.238 6.238 26 C -0.075 4.075 27 C -0.276 4.276 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.136 0.864 31 H 0.170 0.830 32 H 0.174 0.826 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.171 0.829 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.129 0.871 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.669 -28.194 10.669 34.942 hybrid contribution -0.728 0.387 -1.142 1.409 sum -18.397 -27.807 9.527 34.676 Atomic orbital electron populations 1.23362 0.76159 1.05577 1.02488 1.86028 1.23709 1.26891 1.88376 1.18851 0.91614 0.84969 0.94198 1.21399 1.01241 0.91576 1.12000 1.20977 0.92334 0.98373 0.93861 1.19279 0.93468 0.93355 1.10120 1.20209 1.00071 0.92589 0.96589 1.21800 0.96721 0.90232 0.96491 1.60371 1.50214 1.05284 1.17961 1.21912 0.99841 0.93277 0.90285 1.19080 0.85780 0.99161 0.95652 0.86272 1.29481 0.94580 0.90093 0.91233 1.81000 1.13641 1.11980 1.12887 1.19590 0.98640 0.94160 0.91857 1.21409 1.42195 1.00065 0.93113 0.95207 1.26057 0.94262 0.95286 1.03938 1.70091 1.45784 1.14589 1.28989 0.85678 0.78706 0.80482 0.77934 1.18011 1.22247 1.16235 1.18748 0.82802 0.93078 0.94369 1.86149 1.15330 1.34234 1.88096 1.23296 0.97316 0.84745 1.02175 1.20498 0.93337 0.97592 1.16129 0.91482 0.91554 0.86430 0.83021 0.82610 0.92071 0.89526 0.93730 0.92699 0.82937 0.90472 0.91147 0.91821 0.95726 0.92691 0.87051 0.91648 0.91825 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -5.52 10.49 -92.38 -0.97 -6.48 16 3 C 0.15 2.70 6.68 22.49 0.15 2.85 16 4 C -0.24 -3.57 9.04 22.38 0.20 -3.37 16 5 C -0.04 -0.57 9.67 22.24 0.21 -0.35 16 6 C -0.16 -3.11 5.15 -19.75 -0.10 -3.21 16 7 C -0.06 -1.11 5.33 29.85 0.16 -0.95 16 8 C 0.08 1.59 5.67 86.30 0.49 2.07 16 9 N -0.71 -16.68 6.20 -513.88 -3.19 -19.87 16 10 C 0.08 1.97 5.05 86.30 0.44 2.40 16 11 C 0.03 0.85 2.35 -12.60 -0.03 0.82 16 12 H 0.12 3.72 8.14 -2.39 -0.02 3.70 16 13 C 0.26 11.05 13.67 89.44 1.22 12.27 16 14 N -0.52 -24.48 18.54 20.01 0.37 -24.11 16 15 C 0.00 -0.14 3.49 29.85 0.10 -0.04 16 16 C -0.53 -28.84 9.15 25.60 0.23 -28.60 16 17 H 0.03 1.83 7.84 -2.91 -0.02 1.81 16 18 C 0.00 0.06 5.47 84.66 0.46 0.53 16 19 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 20 Si 0.95 41.86 27.47 68.60 1.88 43.74 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.24 -9.53 6.54 99.48 0.65 -8.88 16 24 C 0.16 3.33 6.66 22.49 0.15 3.48 16 25 O -0.32 -7.24 9.63 -92.32 -0.89 -8.12 16 26 C 0.02 0.28 9.81 113.37 1.11 1.39 16 27 C -0.26 -5.02 8.97 22.46 0.20 -4.82 16 28 H 0.07 0.37 7.66 -2.39 -0.02 0.35 16 29 H 0.07 0.39 7.66 -2.39 -0.02 0.37 16 30 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.15 1.40 6.29 -2.91 -0.02 1.38 16 32 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 33 H 0.06 1.47 7.69 -2.39 -0.02 1.45 16 34 H 0.09 1.34 8.05 -2.39 -0.02 1.32 16 35 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.35 7.04 8.73 -89.69 -0.78 6.26 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 2.27 7.58 -2.38 -0.02 2.25 16 41 H 0.02 1.02 7.19 -2.39 -0.02 1.00 16 42 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 45 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 46 H 0.14 2.41 6.30 -2.91 -0.02 2.39 16 Total: -1.00 -75.97 386.67 3.77 -72.20 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.15 Total: 16.03 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 6.12 Total: -14.27 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -2.52 Total: -103.09 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -1.86 Total: -14.61 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.88 Total: 43.74 kcal Total: -75.97 3.77 -72.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554552122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.975 kcal (2) G-P(sol) polarization free energy of solvation -75.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds