Wall clock time and date at job start Tue Mar 31 2020 12:37:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.42900 * 114.00384 * 2 1
4 4 C 1.53002 * 109.47400 * 180.02562 * 3 2 1
5 5 O 1.42893 * 109.47407 * 64.99861 * 4 3 2
6 6 C 1.35895 * 117.00173 * 180.02562 * 5 4 3
7 7 C 1.38737 * 120.05980 * 179.97438 * 6 5 4
8 8 C 1.38137 * 119.94577 * 180.02562 * 7 6 5
9 9 C 1.38266 * 120.05577 * 0.02562 * 8 7 6
10 10 C 1.50704 * 119.94162 * 179.97438 * 9 8 7
11 11 N 1.46900 * 109.47086 * 90.00362 * 10 9 8
12 12 C 1.46904 * 110.99779 * 179.97438 * 11 10 9
13 13 C 1.52996 * 109.46858 * 179.97438 * 12 11 10
14 14 H 1.09000 * 109.47753 * 305.00128 * 13 12 11
15 15 C 1.47204 * 109.47042 * 64.99895 * 13 12 11
16 16 N 8.99865 * 168.48204 * 95.24611 * 4 1 2
17 17 C 1.52996 * 109.47153 * 184.99851 * 13 12 11
18 18 C 1.50702 * 109.47159 * 175.00123 * 17 13 12
19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13
20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13
21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17
22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17
23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18
24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18
25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18
26 26 C 1.38265 * 120.11261 * 0.25414 * 9 8 7
27 27 C 1.38144 * 120.05471 * 359.45497 * 26 9 8
28 28 H 1.09002 * 109.47268 * 300.00429 * 1 2 3
29 29 H 1.09001 * 109.47015 * 60.00143 * 1 2 3
30 30 H 1.09001 * 109.47348 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.47388 * 59.99322 * 3 2 1
32 32 H 1.09005 * 109.47001 * 299.99987 * 3 2 1
33 33 H 1.08998 * 109.46460 * 304.99646 * 4 3 2
34 34 H 1.09004 * 109.46644 * 184.99978 * 4 3 2
35 35 H 1.08007 * 120.02351 * 359.97438 * 7 6 5
36 36 H 1.08001 * 119.97188 * 179.97438 * 8 7 6
37 37 H 1.09003 * 109.47324 * 330.00181 * 10 9 8
38 38 H 1.09004 * 109.47052 * 210.00340 * 10 9 8
39 39 H 1.00897 * 111.00127 * 56.04185 * 11 10 9
40 40 H 1.08997 * 109.46933 * 59.99775 * 12 11 10
41 41 H 1.08996 * 109.47325 * 299.99917 * 12 11 10
42 42 H 1.09004 * 109.47066 * 55.00326 * 17 13 12
43 43 H 1.08994 * 109.47405 * 295.00156 * 17 13 12
44 44 H 0.97005 * 119.99651 * 179.97438 * 21 20 18
45 45 H 1.08002 * 119.97019 * 179.69821 * 26 9 8
46 46 H 1.07995 * 120.03094 * 180.25097 * 27 26 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1846 -0.0006
5 8 3.9649 0.5796 -1.2219
6 6 5.3019 0.3977 -1.3836
7 6 5.7886 -0.1845 -2.5450
8 6 7.1480 -0.3687 -2.7067
9 6 8.0235 0.0261 -1.7120
10 6 9.5061 -0.1767 -1.8908
11 7 10.0884 1.0088 -2.5339
12 6 11.5360 0.8468 -2.7242
13 6 12.1052 2.0983 -3.3955
14 1 11.5641 2.2918 -4.3217
15 6 11.9577 3.2504 -2.4912
16 7 11.8439 4.1406 -1.7915
17 6 13.5873 1.8807 -3.7067
18 6 14.1177 3.0625 -4.4769
19 1 13.4632 3.8866 -4.7197
20 6 15.4401 3.0945 -4.8661
21 7 16.2371 2.0912 -4.5700
22 14 16.0993 4.5629 -5.8140
23 1 15.0090 5.5501 -6.0185
24 1 17.2009 5.1950 -5.0442
25 1 16.6125 4.1112 -7.1323
26 6 7.5406 0.6012 -0.5511
27 6 6.1824 0.7932 -0.3871
28 1 -0.3634 0.5139 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 1.6886 1.8464 0.8899
32 1 1.6886 1.8464 -0.8900
33 1 3.8514 0.5682 0.8410
34 1 3.9785 2.1765 0.0889
35 1 5.1050 -0.4942 -3.3218
36 1 7.5273 -0.8223 -3.6105
37 1 9.6803 -1.0520 -2.5166
38 1 9.9722 -0.3276 -0.9171
39 1 9.8846 1.8437 -2.0054
40 1 11.7246 -0.0214 -3.3555
41 1 12.0159 0.7033 -1.7561
42 1 13.7043 0.9760 -4.3034
43 1 14.1427 1.7755 -2.7748
44 1 17.1674 2.1136 -4.8441
45 1 8.2262 0.9043 0.2265
46 1 5.8060 1.2462 0.5181
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000554552147.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:42
Heat of formation + Delta-G solvation = -44.502689 kcal
Electronic energy + Delta-G solvation = -24614.747216 eV
Core-core repulsion = 20890.471803 eV
Total energy + Delta-G solvation = -3724.275412 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-40.38763 -38.64163 -37.83099 -37.07567 -35.07118 -33.60409 -32.10403 -31.40317
-30.88196 -29.73269 -26.92870 -26.65715 -24.68844 -23.97098 -22.61481 -22.14443
-21.82153 -21.01510 -18.56979 -17.29726 -16.81416 -16.73302 -16.43787 -16.10988
-15.79325 -15.53658 -15.36538 -14.86526 -14.71794 -14.50920 -14.27814 -13.59712
-13.45265 -13.24381 -13.08825 -12.97696 -12.75252 -12.47171 -12.24927 -12.11052
-12.02027 -11.78851 -11.63324 -11.35349 -11.21611 -11.12511 -11.02234 -10.93411
-10.72627 -10.50840 -10.25688 -10.21009 -9.55567 -9.21584 -9.10931 -8.45753
-8.41226 -8.15719 -6.09356 -4.12233 1.23958 1.27713 2.87600 3.22352
3.28916 3.37110 3.41964 3.55129 3.59184 3.63403 4.36584 4.38580
4.48988 4.58292 4.66807 4.69378 4.76171 4.78863 4.83499 4.87647
4.90037 4.93835 5.08577 5.20711 5.21647 5.26354 5.28850 5.44184
5.54637 5.58588 5.68738 5.73730 5.92848 6.12595 6.15718 6.20967
6.36558 6.54013 6.56654 6.58751 6.65245 7.08746 7.21973 7.42496
7.45197 7.53701 7.86103 8.23670 8.40493 8.92616 9.53279 11.01548
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.031219 B = 0.001741 C = 0.001712
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 896.685091 B =16076.768788 C =16351.818580
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.385 6.385
3 C 0.062 3.938
4 C 0.061 3.939
5 O -0.309 6.309
6 C 0.127 3.873
7 C -0.152 4.152
8 C -0.056 4.056
9 C -0.116 4.116
10 C 0.100 3.900
11 N -0.687 5.687
12 C 0.067 3.933
13 C 0.007 3.993
14 H 0.111 0.889
15 C 0.241 3.759
16 N -0.478 5.478
17 C 0.032 3.968
18 C -0.526 4.526
19 H 0.057 0.943
20 C 0.062 3.938
21 N -0.891 5.891
22 Si 0.891 3.109
23 H -0.272 1.272
24 H -0.284 1.284
25 H -0.282 1.282
26 C -0.074 4.074
27 C -0.210 4.210
28 H 0.041 0.959
29 H 0.043 0.957
30 H 0.087 0.913
31 H 0.071 0.929
32 H 0.062 0.938
33 H 0.071 0.929
34 H 0.078 0.922
35 H 0.129 0.871
36 H 0.133 0.867
37 H 0.083 0.917
38 H 0.037 0.963
39 H 0.339 0.661
40 H 0.093 0.907
41 H 0.035 0.965
42 H 0.040 0.960
43 H 0.024 0.976
44 H 0.262 0.738
45 H 0.121 0.879
46 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.222 -7.621 9.107 30.619
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.304 6.304
3 C -0.014 4.014
4 C -0.015 4.015
5 O -0.222 6.222
6 C 0.081 3.919
7 C -0.171 4.171
8 C -0.074 4.074
9 C -0.117 4.117
10 C -0.028 4.028
11 N -0.318 5.318
12 C -0.063 4.063
13 C -0.015 4.015
14 H 0.129 0.871
15 C -0.075 4.075
16 N -0.155 5.155
17 C -0.007 4.007
18 C -0.564 4.564
19 H 0.076 0.924
20 C -0.140 4.140
21 N -0.530 5.530
22 Si 0.719 3.281
23 H -0.197 1.197
24 H -0.210 1.210
25 H -0.208 1.208
26 C -0.093 4.093
27 C -0.229 4.229
28 H 0.060 0.940
29 H 0.061 0.939
30 H 0.106 0.894
31 H 0.089 0.911
32 H 0.080 0.920
33 H 0.089 0.911
34 H 0.096 0.904
35 H 0.147 0.853
36 H 0.151 0.849
37 H 0.102 0.898
38 H 0.055 0.945
39 H 0.156 0.844
40 H 0.111 0.889
41 H 0.053 0.947
42 H 0.059 0.941
43 H 0.043 0.957
44 H 0.071 0.929
45 H 0.139 0.861
46 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -28.415 -6.765 9.382 30.678
hybrid contribution 0.763 1.043 0.382 1.347
sum -27.651 -5.722 9.763 29.877
Atomic orbital electron populations
1.22769 0.80757 1.03056 1.00007 1.87969 1.19880 1.27102 1.95419
1.22586 0.91584 0.85791 1.01478 1.22819 0.93638 0.98312 0.86682
1.86108 1.20292 1.76965 1.38880 1.19008 0.82120 0.96022 0.94719
1.20434 0.95732 1.04107 0.96830 1.20878 0.91490 0.96941 0.98126
1.19741 0.95550 1.01758 0.94607 1.20830 0.89736 0.94521 0.97728
1.60641 1.12754 1.04492 1.53910 1.22106 0.85935 0.98492 0.99794
1.19338 1.02528 0.85199 0.94440 0.87077 1.29422 0.90878 0.94217
0.93006 1.81113 1.11364 1.11142 1.11884 1.19171 0.85282 0.98459
0.97756 1.21196 0.95349 1.04232 1.35618 0.92439 1.24955 0.96964
0.96119 0.95957 1.69950 1.05805 1.30830 1.46434 0.86535 0.79024
0.82843 0.79675 1.19686 1.21028 1.20820 1.20859 0.94544 0.96747
0.97115 1.21151 0.94164 1.07657 0.99948 0.94049 0.93866 0.89418
0.91081 0.91979 0.91094 0.90369 0.85270 0.84931 0.89815 0.94520
0.84359 0.88915 0.94679 0.94145 0.95748 0.92869 0.86083 0.85800
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.16 11.01 101.05 1.11 1.28 16
2 O -0.38 -3.37 10.67 -40.08 -0.43 -3.80 16
3 C 0.06 0.41 6.32 37.16 0.23 0.64 16
4 C 0.06 0.46 5.12 37.16 0.19 0.65 16
5 O -0.31 -3.37 10.10 -24.26 -0.25 -3.62 16
6 C 0.13 1.43 6.69 -39.21 -0.26 1.16 16
7 C -0.15 -1.68 9.99 -39.43 -0.39 -2.07 16
8 C -0.06 -0.60 9.69 -39.61 -0.38 -0.99 16
9 C -0.12 -1.30 5.39 -104.60 -0.56 -1.86 16
10 C 0.10 1.12 5.81 -4.97 -0.03 1.09 16
11 N -0.69 -9.14 6.49 -115.05 -0.75 -9.89 16
12 C 0.07 0.97 5.12 -3.82 -0.02 0.95 16
13 C 0.01 0.13 2.42 -93.41 -0.23 -0.10 16
14 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16
15 C 0.24 4.90 12.98 -20.69 -0.27 4.63 16
16 N -0.48 -10.46 18.55 42.23 0.78 -9.67 16
17 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16
18 C -0.53 -14.02 8.60 -34.44 -0.30 -14.32 16
19 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16
20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16
21 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16
22 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16
23 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16
24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
26 C -0.07 -0.80 9.69 -39.61 -0.38 -1.18 16
27 C -0.21 -2.19 9.04 -39.43 -0.36 -2.54 16
28 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16
29 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16
30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16
31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16
32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
33 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16
34 H 0.08 0.46 7.66 -51.93 -0.40 0.06 16
35 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16
36 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16
37 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16
38 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16
39 H 0.34 4.79 7.80 -39.29 -0.31 4.49 16
40 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16
41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16
43 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16
44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16
45 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16
46 H 0.12 1.02 6.30 -52.49 -0.33 0.69 16
LS Contribution 394.79 15.07 5.95 5.95
Total: -1.00 -31.97 394.79 -8.14 -40.11
By element:
Atomic # 1 Polarization: 7.07 SS G_CDS: -7.30 Total: -0.23 kcal
Atomic # 6 Polarization: -8.57 SS G_CDS: -1.87 Total: -10.43 kcal
Atomic # 7 Polarization: -45.11 SS G_CDS: 0.77 Total: -44.33 kcal
Atomic # 8 Polarization: -6.74 SS G_CDS: -0.67 Total: -7.42 kcal
Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -31.97 -8.14 -40.11 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000554552147.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.397 kcal
(2) G-P(sol) polarization free energy of solvation -31.966 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.364 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.503 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds