Wall clock time and date at job start Tue Mar 31 2020 12:37:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.42900 * 114.00384 * 2 1
4 4 C 1.53002 * 109.47400 * 180.02562 * 3 2 1
5 5 O 1.42893 * 109.47407 * 64.99861 * 4 3 2
6 6 C 1.35895 * 117.00173 * 180.02562 * 5 4 3
7 7 C 1.38737 * 120.05980 * 179.97438 * 6 5 4
8 8 C 1.38137 * 119.94577 * 180.02562 * 7 6 5
9 9 C 1.38266 * 120.05577 * 0.02562 * 8 7 6
10 10 C 1.50704 * 119.94162 * 179.97438 * 9 8 7
11 11 N 1.46900 * 109.47086 * 90.00362 * 10 9 8
12 12 C 1.46904 * 110.99779 * 179.97438 * 11 10 9
13 13 C 1.52996 * 109.46858 * 179.97438 * 12 11 10
14 14 H 1.09000 * 109.47753 * 305.00128 * 13 12 11
15 15 C 1.47204 * 109.47042 * 64.99895 * 13 12 11
16 16 N 8.99865 * 168.48204 * 95.24611 * 4 1 2
17 17 C 1.52996 * 109.47153 * 184.99851 * 13 12 11
18 18 C 1.50702 * 109.47159 * 175.00123 * 17 13 12
19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13
20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13
21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17
22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17
23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18
24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18
25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18
26 26 C 1.38265 * 120.11261 * 0.25414 * 9 8 7
27 27 C 1.38144 * 120.05471 * 359.45497 * 26 9 8
28 28 H 1.09002 * 109.47268 * 300.00429 * 1 2 3
29 29 H 1.09001 * 109.47015 * 60.00143 * 1 2 3
30 30 H 1.09001 * 109.47348 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.47388 * 59.99322 * 3 2 1
32 32 H 1.09005 * 109.47001 * 299.99987 * 3 2 1
33 33 H 1.08998 * 109.46460 * 304.99646 * 4 3 2
34 34 H 1.09004 * 109.46644 * 184.99978 * 4 3 2
35 35 H 1.08007 * 120.02351 * 359.97438 * 7 6 5
36 36 H 1.08001 * 119.97188 * 179.97438 * 8 7 6
37 37 H 1.09003 * 109.47324 * 330.00181 * 10 9 8
38 38 H 1.09004 * 109.47052 * 210.00340 * 10 9 8
39 39 H 1.00897 * 111.00127 * 56.04185 * 11 10 9
40 40 H 1.08997 * 109.46933 * 59.99775 * 12 11 10
41 41 H 1.08996 * 109.47325 * 299.99917 * 12 11 10
42 42 H 1.09004 * 109.47066 * 55.00326 * 17 13 12
43 43 H 1.08994 * 109.47405 * 295.00156 * 17 13 12
44 44 H 0.97005 * 119.99651 * 179.97438 * 21 20 18
45 45 H 1.08002 * 119.97019 * 179.69821 * 26 9 8
46 46 H 1.07995 * 120.03094 * 180.25097 * 27 26 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1846 -0.0006
5 8 3.9649 0.5796 -1.2219
6 6 5.3019 0.3977 -1.3836
7 6 5.7886 -0.1845 -2.5450
8 6 7.1480 -0.3687 -2.7067
9 6 8.0235 0.0261 -1.7120
10 6 9.5061 -0.1767 -1.8908
11 7 10.0884 1.0088 -2.5339
12 6 11.5360 0.8468 -2.7242
13 6 12.1052 2.0983 -3.3955
14 1 11.5641 2.2918 -4.3217
15 6 11.9577 3.2504 -2.4912
16 7 11.8439 4.1406 -1.7915
17 6 13.5873 1.8807 -3.7067
18 6 14.1177 3.0625 -4.4769
19 1 13.4632 3.8866 -4.7197
20 6 15.4401 3.0945 -4.8661
21 7 16.2371 2.0912 -4.5700
22 14 16.0993 4.5629 -5.8140
23 1 15.0090 5.5501 -6.0185
24 1 17.2009 5.1950 -5.0442
25 1 16.6125 4.1112 -7.1323
26 6 7.5406 0.6012 -0.5511
27 6 6.1824 0.7932 -0.3871
28 1 -0.3634 0.5139 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 1.6886 1.8464 0.8899
32 1 1.6886 1.8464 -0.8900
33 1 3.8514 0.5682 0.8410
34 1 3.9785 2.1765 0.0889
35 1 5.1050 -0.4942 -3.3218
36 1 7.5273 -0.8223 -3.6105
37 1 9.6803 -1.0520 -2.5166
38 1 9.9722 -0.3276 -0.9171
39 1 9.8846 1.8437 -2.0054
40 1 11.7246 -0.0214 -3.3555
41 1 12.0159 0.7033 -1.7561
42 1 13.7043 0.9760 -4.3034
43 1 14.1427 1.7755 -2.7748
44 1 17.1674 2.1136 -4.8441
45 1 8.2262 0.9043 0.2265
46 1 5.8060 1.2462 0.5181
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000554552147.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:42
Heat of formation + Delta-G solvation = -64.040466 kcal
Electronic energy + Delta-G solvation = -24615.594438 eV
Core-core repulsion = 20890.471803 eV
Total energy + Delta-G solvation = -3725.122634 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.14299 -39.37903 -38.77662 -38.16926 -36.38579 -35.39596 -33.58767 -32.24422
-31.68213 -30.70143 -28.33160 -27.27184 -25.87292 -24.64228 -23.90074 -23.54174
-22.86797 -21.84605 -19.29530 -18.55267 -18.23832 -17.83285 -17.44004 -16.81850
-16.66640 -16.60370 -16.17515 -16.09538 -15.65401 -15.50217 -15.30352 -14.77673
-14.65993 -14.32716 -14.25267 -14.06989 -13.91890 -13.58876 -13.53903 -13.22091
-13.07529 -12.97887 -12.66910 -12.54561 -12.50794 -12.40581 -12.25561 -12.15197
-11.94908 -11.79836 -11.66597 -11.37324 -11.11839 -10.69014 -10.54445 -9.91130
-9.41162 -9.01793 -8.18754 -6.26557 0.43903 0.45006 1.39491 1.42599
1.52959 1.93946 1.96372 2.22215 2.42178 2.74739 2.78678 3.16525
3.26724 3.41746 3.79680 3.93658 3.96393 4.02981 4.08634 4.19195
4.30332 4.35633 4.39505 4.45424 4.48644 4.50588 4.54224 4.62095
4.67348 4.77217 4.79649 4.85745 4.89704 4.98741 5.03131 5.13998
5.33430 5.40452 5.49286 5.64724 5.73144 5.80799 5.85463 6.03090
6.16392 6.22886 6.34302 6.47548 6.76242 6.88677 7.41956 8.92214
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.031219 B = 0.001741 C = 0.001712
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 896.685091 B =16076.768788 C =16351.818580
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.417 6.417
3 C 0.060 3.940
4 C 0.053 3.947
5 O -0.326 6.326
6 C 0.116 3.884
7 C -0.166 4.166
8 C -0.060 4.060
9 C -0.126 4.126
10 C 0.103 3.897
11 N -0.688 5.688
12 C 0.078 3.922
13 C 0.019 3.981
14 H 0.122 0.878
15 C 0.251 3.749
16 N -0.506 5.506
17 C 0.038 3.962
18 C -0.539 4.539
19 H 0.053 0.947
20 C 0.012 3.988
21 N -0.922 5.922
22 Si 0.948 3.052
23 H -0.271 1.271
24 H -0.285 1.285
25 H -0.273 1.273
26 C -0.082 4.082
27 C -0.214 4.214
28 H 0.057 0.943
29 H 0.048 0.952
30 H 0.092 0.908
31 H 0.098 0.902
32 H 0.063 0.937
33 H 0.073 0.927
34 H 0.095 0.905
35 H 0.136 0.864
36 H 0.145 0.855
37 H 0.096 0.904
38 H 0.043 0.957
39 H 0.333 0.667
40 H 0.109 0.891
41 H 0.035 0.965
42 H 0.038 0.962
43 H 0.001 0.999
44 H 0.264 0.736
45 H 0.130 0.870
46 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.317 -7.499 9.189 31.625
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.337 6.337
3 C -0.016 4.016
4 C -0.022 4.022
5 O -0.241 6.241
6 C 0.070 3.930
7 C -0.184 4.184
8 C -0.078 4.078
9 C -0.127 4.127
10 C -0.025 4.025
11 N -0.318 5.318
12 C -0.052 4.052
13 C -0.003 4.003
14 H 0.140 0.860
15 C -0.065 4.065
16 N -0.184 5.184
17 C -0.001 4.001
18 C -0.577 4.577
19 H 0.071 0.929
20 C -0.187 4.187
21 N -0.562 5.562
22 Si 0.774 3.226
23 H -0.195 1.195
24 H -0.211 1.211
25 H -0.198 1.198
26 C -0.101 4.101
27 C -0.233 4.233
28 H 0.075 0.925
29 H 0.066 0.934
30 H 0.110 0.890
31 H 0.116 0.884
32 H 0.081 0.919
33 H 0.091 0.909
34 H 0.113 0.887
35 H 0.154 0.846
36 H 0.163 0.837
37 H 0.114 0.886
38 H 0.061 0.939
39 H 0.150 0.850
40 H 0.127 0.873
41 H 0.053 0.947
42 H 0.057 0.943
43 H 0.020 0.980
44 H 0.073 0.927
45 H 0.148 0.852
46 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -29.530 -6.645 9.465 31.714
hybrid contribution 1.025 1.000 0.389 1.484
sum -28.505 -5.645 9.854 30.684
Atomic orbital electron populations
1.22922 0.79315 1.03777 1.01038 1.87917 1.21643 1.28488 1.95668
1.22731 0.90756 0.85306 1.02804 1.23096 0.94567 0.98977 0.85562
1.86091 1.20109 1.77345 1.40529 1.19211 0.82566 0.96136 0.95055
1.20639 0.96135 1.04416 0.97247 1.21053 0.91412 0.96807 0.98532
1.19808 0.95540 1.02363 0.95000 1.20862 0.89628 0.93853 0.98131
1.60629 1.11620 1.05157 1.54406 1.21956 0.86730 0.96789 0.99735
1.19251 0.99831 0.86226 0.95021 0.86022 1.29788 0.90089 0.94040
0.92568 1.81113 1.12187 1.12100 1.13001 1.18996 0.87938 0.97121
0.96029 1.21600 0.95513 1.05104 1.35496 0.92891 1.25697 0.97519
0.98464 0.97038 1.70037 1.06123 1.32418 1.47663 0.85649 0.78233
0.79944 0.78763 1.19500 1.21137 1.19810 1.21061 0.94981 0.96659
0.97365 1.21368 0.93975 1.07423 1.00489 0.92455 0.93352 0.88980
0.88378 0.91899 0.90911 0.88692 0.84648 0.83716 0.88602 0.93917
0.84966 0.87266 0.94680 0.94335 0.98033 0.92739 0.85172 0.83968
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 11.01 113.37 1.25 1.49 16
2 O -0.42 -6.99 10.67 -144.35 -1.54 -8.53 16
3 C 0.06 0.71 6.32 71.98 0.45 1.16 16
4 C 0.05 0.74 5.12 71.98 0.37 1.11 16
5 O -0.33 -6.96 10.10 -87.74 -0.89 -7.85 16
6 C 0.12 2.53 6.69 22.51 0.15 2.68 16
7 C -0.17 -3.54 9.99 22.36 0.22 -3.32 16
8 C -0.06 -1.22 9.69 22.25 0.22 -1.00 16
9 C -0.13 -2.66 5.39 -19.85 -0.11 -2.76 16
10 C 0.10 2.11 5.81 85.56 0.50 2.60 16
11 N -0.69 -17.03 6.49 -517.92 -3.36 -20.39 16
12 C 0.08 2.13 5.12 86.30 0.44 2.57 16
13 C 0.02 0.66 2.42 -12.60 -0.03 0.63 16
14 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16
15 C 0.25 10.00 12.98 89.42 1.16 11.16 16
16 N -0.51 -21.89 18.55 20.03 0.37 -21.51 16
17 C 0.04 1.74 4.42 29.85 0.13 1.87 16
18 C -0.54 -28.57 8.60 25.60 0.22 -28.35 16
19 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16
20 C 0.01 0.64 5.46 84.66 0.46 1.11 16
21 N -0.92 -52.80 13.29 21.45 0.28 -52.51 16
22 Si 0.95 43.55 29.54 68.60 2.03 45.58 16
23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16
24 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16
25 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16
26 C -0.08 -1.67 9.69 22.25 0.22 -1.45 16
27 C -0.21 -4.20 9.04 22.37 0.20 -4.00 16
28 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16
29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16
30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16
31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16
32 H 0.06 0.70 8.14 -2.38 -0.02 0.69 16
33 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16
34 H 0.10 0.97 7.66 -2.38 -0.02 0.95 16
35 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16
36 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16
37 H 0.10 1.73 8.08 -2.39 -0.02 1.71 16
38 H 0.04 0.83 8.08 -2.38 -0.02 0.81 16
39 H 0.33 8.94 7.80 -89.70 -0.70 8.24 16
40 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16
41 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16
42 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16
43 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16
44 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16
45 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16
46 H 0.14 2.13 6.30 -2.91 -0.02 2.11 16
Total: -1.00 -67.36 394.79 3.02 -64.34
By element:
Atomic # 1 Polarization: 15.10 SS G_CDS: 0.27 Total: 15.37 kcal
Atomic # 6 Polarization: -20.36 SS G_CDS: 5.86 Total: -14.50 kcal
Atomic # 7 Polarization: -91.71 SS G_CDS: -2.70 Total: -94.42 kcal
Atomic # 8 Polarization: -13.95 SS G_CDS: -2.43 Total: -16.38 kcal
Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal
Total: -67.36 3.02 -64.34 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000554552147.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.300 kcal
(2) G-P(sol) polarization free energy of solvation -67.364 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.064 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.340 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.040 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds