Wall clock time and date at job start Tue Mar 31 2020 12:37:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42903 * 114.00080 * 2 1
4 4 C 1.53002 * 109.47271 * 179.97438 * 3 2 1
5 5 O 1.42904 * 109.47009 * 65.00145 * 4 3 2
6 6 C 1.35898 * 116.99940 * 179.97438 * 5 4 3
7 7 C 1.38747 * 120.05546 * 0.02562 * 6 5 4
8 8 C 1.38125 * 119.94590 * 179.97438 * 7 6 5
9 9 C 1.38289 * 120.05159 * 359.97438 * 8 7 6
10 10 C 1.38243 * 120.11362 * 359.97438 * 9 8 7
11 11 C 1.38163 * 120.05442 * 0.02562 * 10 9 8
12 12 C 1.50706 * 120.02719 * 180.02562 * 11 10 9
13 13 N 1.46906 * 109.46672 * 259.97381 * 12 11 10
14 14 C 1.46898 * 110.99969 * 179.97438 * 13 12 11
15 15 C 1.52995 * 109.47373 * 179.97438 * 14 13 12
16 16 H 1.09002 * 109.46841 * 55.00394 * 15 14 13
17 17 C 1.47201 * 109.47392 * 295.00373 * 15 14 13
18 18 N 5.67756 * 93.53774 * 302.56088 * 2 1 3
19 19 C 1.52999 * 109.47362 * 175.00128 * 15 14 13
20 20 C 1.50695 * 109.47249 * 185.00225 * 19 15 14
21 21 H 1.08001 * 119.99923 * 359.97438 * 20 19 15
22 22 C 1.37882 * 120.00140 * 179.97438 * 20 19 15
23 23 N 1.31512 * 119.99663 * 0.02562 * 22 20 19
24 24 Si 1.86804 * 119.99957 * 179.97438 * 22 20 19
25 25 H 1.48497 * 109.47092 * 60.00138 * 24 22 20
26 26 H 1.48505 * 109.46874 * 180.02562 * 24 22 20
27 27 H 1.48500 * 109.47132 * 299.99993 * 24 22 20
28 28 H 1.08990 * 109.46898 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.46754 * 299.99706 * 1 2 3
30 30 H 1.09000 * 109.46900 * 59.99327 * 1 2 3
31 31 H 1.09005 * 109.46928 * 60.00099 * 3 2 1
32 32 H 1.08996 * 109.47285 * 300.00545 * 3 2 1
33 33 H 1.08999 * 109.47276 * 305.00220 * 4 3 2
34 34 H 1.08995 * 109.46990 * 185.00262 * 4 3 2
35 35 H 1.08000 * 120.03041 * 359.95195 * 7 6 5
36 36 H 1.07993 * 119.97844 * 179.72247 * 8 7 6
37 37 H 1.08004 * 119.94552 * 179.97438 * 9 8 7
38 38 H 1.08001 * 119.97523 * 179.97438 * 10 9 8
39 39 H 1.08993 * 109.47379 * 19.96866 * 12 11 10
40 40 H 1.08998 * 109.47588 * 139.97808 * 12 11 10
41 41 H 1.00903 * 110.99722 * 303.95123 * 13 12 11
42 42 H 1.09005 * 109.47243 * 300.00503 * 14 13 12
43 43 H 1.09005 * 109.46701 * 59.99653 * 14 13 12
44 44 H 1.08999 * 109.47196 * 305.00379 * 19 15 14
45 45 H 1.09000 * 109.47055 * 65.00153 * 19 15 14
46 46 H 0.97004 * 119.99652 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5355 1.1847 0.0006
5 8 3.9659 0.5793 -1.2202
6 6 5.3031 0.3983 -1.3812
7 6 6.1830 0.7949 -0.3844
8 6 7.5417 0.6095 -0.5502
9 6 8.0251 0.0286 -1.7084
10 6 7.1504 -0.3683 -2.7026
11 6 5.7905 -0.1850 -2.5415
12 6 4.8374 -0.6185 -3.6254
13 7 4.4393 0.5492 -4.4230
14 6 3.5086 0.1639 -5.4923
15 6 3.1171 1.4035 -6.2990
16 1 4.0170 1.8987 -6.6637
17 6 2.3613 2.3295 -5.4398
18 7 1.7793 3.0498 -4.7760
19 6 2.2480 0.9855 -7.4868
20 6 1.9643 2.1881 -8.3494
21 1 2.3636 3.1541 -8.0775
22 6 1.1950 2.0553 -9.4860
23 7 0.7084 0.8792 -9.8168
24 14 0.8428 3.5463 -10.5549
25 1 2.1225 4.1123 -11.0520
26 1 -0.0006 3.1405 -11.7079
27 1 0.1261 4.5712 -9.7543
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 1.6886 1.8464 0.8900
32 1 1.6886 1.8464 -0.8899
33 1 3.8508 0.5685 0.8427
34 1 3.9784 2.1765 0.0903
35 1 5.8060 1.2485 0.5203
36 1 8.2273 0.9220 0.2234
37 1 9.0878 -0.1152 -1.8364
38 1 7.5304 -0.8214 -3.6063
39 1 5.3275 -1.3484 -4.2696
40 1 3.9533 -1.0682 -3.1735
41 1 4.0406 1.2679 -3.8377
42 1 3.9899 -0.5606 -6.1493
43 1 2.6153 -0.2808 -5.0535
44 1 2.7734 0.2327 -8.0743
45 1 1.3086 0.5707 -7.1214
46 1 0.1675 0.7857 -10.6166
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000560360608.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:44
Heat of formation + Delta-G solvation = -43.802078 kcal
Electronic energy + Delta-G solvation = -26065.157200 eV
Core-core repulsion = 22340.912169 eV
Total energy + Delta-G solvation = -3724.245032 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.43108 -38.34641 -37.38602 -37.12157 -35.16102 -33.62842 -32.24950 -31.15575
-30.62672 -29.47872 -26.87336 -26.56876 -24.77598 -23.87717 -22.50671 -21.83202
-21.72993 -21.11380 -18.33694 -17.07161 -16.73273 -16.60101 -16.36048 -16.11893
-15.73618 -15.43244 -15.11540 -14.90722 -14.73592 -14.48612 -14.20705 -13.56953
-13.30204 -13.12028 -12.90444 -12.72234 -12.57393 -12.37078 -12.08570 -12.00113
-11.85772 -11.75948 -11.58029 -11.35718 -11.18900 -11.09489 -10.97025 -10.84650
-10.66556 -10.51848 -10.20762 -9.94955 -9.52843 -9.22107 -8.98689 -8.42542
-8.32704 -8.10445 -6.06729 -4.09667 1.21146 1.34916 2.99200 3.32989
3.36902 3.40649 3.45752 3.59520 3.63367 3.67268 4.41147 4.50906
4.56428 4.69968 4.76357 4.79716 4.86374 4.94490 4.94928 5.00583
5.13991 5.20021 5.21796 5.23530 5.31096 5.40072 5.50208 5.53654
5.54405 5.67698 5.74805 5.83939 5.97239 6.18273 6.22985 6.34028
6.43199 6.47025 6.60159 6.68540 6.85148 7.18106 7.30209 7.47551
7.55633 7.58909 7.88428 8.26666 8.45536 8.94693 9.55384 11.04160
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.011847 B = 0.003121 C = 0.002664
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2362.808754 B = 8968.115814 C =10508.977070
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.385 6.385
3 C 0.060 3.940
4 C 0.064 3.936
5 O -0.303 6.303
6 C 0.136 3.864
7 C -0.213 4.213
8 C -0.084 4.084
9 C -0.161 4.161
10 C -0.063 4.063
11 C -0.108 4.108
12 C 0.105 3.895
13 N -0.685 5.685
14 C 0.067 3.933
15 C 0.007 3.993
16 H 0.110 0.890
17 C 0.243 3.757
18 N -0.480 5.480
19 C 0.033 3.967
20 C -0.526 4.526
21 H 0.056 0.944
22 C 0.062 3.938
23 N -0.892 5.892
24 Si 0.891 3.109
25 H -0.275 1.275
26 H -0.286 1.286
27 H -0.278 1.278
28 H 0.087 0.913
29 H 0.040 0.960
30 H 0.045 0.955
31 H 0.070 0.930
32 H 0.065 0.935
33 H 0.070 0.930
34 H 0.077 0.923
35 H 0.124 0.876
36 H 0.121 0.879
37 H 0.122 0.878
38 H 0.131 0.869
39 H 0.081 0.919
40 H 0.043 0.957
41 H 0.340 0.660
42 H 0.091 0.909
43 H 0.035 0.965
44 H 0.040 0.960
45 H 0.024 0.976
46 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.318 -4.385 21.418 24.175
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.303 6.303
3 C -0.016 4.016
4 C -0.012 4.012
5 O -0.216 6.216
6 C 0.090 3.910
7 C -0.231 4.231
8 C -0.102 4.102
9 C -0.179 4.179
10 C -0.081 4.081
11 C -0.109 4.109
12 C -0.023 4.023
13 N -0.316 5.316
14 C -0.063 4.063
15 C -0.015 4.015
16 H 0.128 0.872
17 C -0.073 4.073
18 N -0.157 5.157
19 C -0.006 4.006
20 C -0.564 4.564
21 H 0.074 0.926
22 C -0.140 4.140
23 N -0.531 5.531
24 Si 0.719 3.281
25 H -0.200 1.200
26 H -0.212 1.212
27 H -0.203 1.203
28 H 0.106 0.894
29 H 0.058 0.942
30 H 0.064 0.936
31 H 0.088 0.912
32 H 0.083 0.917
33 H 0.088 0.912
34 H 0.095 0.905
35 H 0.142 0.858
36 H 0.139 0.861
37 H 0.140 0.860
38 H 0.149 0.851
39 H 0.100 0.900
40 H 0.061 0.939
41 H 0.158 0.842
42 H 0.110 0.890
43 H 0.053 0.947
44 H 0.058 0.942
45 H 0.042 0.958
46 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 9.808 -3.639 21.742 24.128
hybrid contribution -1.019 0.839 -0.149 1.328
sum 8.789 -2.800 21.593 23.480
Atomic orbital electron populations
1.22771 0.80634 1.03022 1.00161 1.87934 1.19990 1.26954 1.95456
1.22582 0.91406 0.85955 1.01703 1.22819 0.93876 0.98064 0.86395
1.86158 1.19884 1.76613 1.38948 1.18905 0.82465 0.95484 0.94165
1.21172 0.94335 1.07752 0.99890 1.20891 0.94443 0.97403 0.97465
1.21037 0.99751 1.02477 0.94616 1.20918 0.91359 0.97361 0.98480
1.19221 0.94613 1.03071 0.93973 1.20692 0.96319 0.93119 0.92211
1.60688 1.45184 1.10825 1.14913 1.22081 0.94096 0.96954 0.93148
1.19335 0.98196 0.90605 0.93346 0.87174 1.29459 0.92597 0.93263
0.92028 1.81132 1.11024 1.10816 1.12717 1.19154 0.94276 0.97567
0.89558 1.21120 1.32416 0.94663 1.08227 0.92579 1.24951 0.95549
0.95853 0.97608 1.69932 1.34703 1.22688 1.25746 0.86658 0.78452
0.83091 0.79894 1.20002 1.21207 1.20313 0.89432 0.94166 0.93585
0.91188 0.91668 0.91215 0.90481 0.85814 0.86108 0.85990 0.85095
0.90043 0.93869 0.84176 0.89046 0.94707 0.94174 0.95770 0.92770
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.29 11.01 101.05 1.11 1.40 16
2 O -0.38 -4.71 10.67 -40.08 -0.43 -5.13 16
3 C 0.06 0.62 6.32 37.16 0.23 0.85 16
4 C 0.06 0.64 5.12 37.16 0.19 0.83 16
5 O -0.30 -4.01 9.28 -24.26 -0.23 -4.23 16
6 C 0.14 1.71 6.66 -39.22 -0.26 1.45 16
7 C -0.21 -2.24 9.04 -39.43 -0.36 -2.59 16
8 C -0.08 -0.79 10.04 -39.60 -0.40 -1.19 16
9 C -0.16 -1.55 10.04 -39.56 -0.40 -1.95 16
10 C -0.06 -0.68 9.66 -39.61 -0.38 -1.06 16
11 C -0.11 -1.36 5.41 -104.47 -0.56 -1.92 16
12 C 0.11 1.38 5.48 -4.97 -0.03 1.35 16
13 N -0.69 -10.22 6.49 -115.05 -0.75 -10.97 16
14 C 0.07 1.07 5.12 -3.83 -0.02 1.05 16
15 C 0.01 0.14 2.42 -93.41 -0.23 -0.09 16
16 H 0.11 2.04 8.14 -51.93 -0.42 1.61 16
17 C 0.24 5.11 12.99 -20.65 -0.27 4.84 16
18 N -0.48 -10.70 18.56 42.29 0.78 -9.92 16
19 C 0.03 0.78 4.42 -27.89 -0.12 0.66 16
20 C -0.53 -14.22 8.60 -34.44 -0.30 -14.52 16
21 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16
22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
23 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16
24 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16
25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16
29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16
30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
33 H 0.07 0.61 7.66 -51.93 -0.40 0.22 16
34 H 0.08 0.63 7.66 -51.93 -0.40 0.23 16
35 H 0.12 1.04 6.30 -52.49 -0.33 0.71 16
36 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16
37 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16
38 H 0.13 1.20 8.04 -52.49 -0.42 0.78 16
39 H 0.08 0.94 8.00 -51.93 -0.42 0.53 16
40 H 0.04 0.61 7.85 -51.93 -0.41 0.20 16
41 H 0.34 5.54 7.74 -39.29 -0.30 5.23 16
42 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16
43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
44 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16
45 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16
46 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16
LS Contribution 393.63 15.07 5.93 5.93
Total: -1.00 -31.98 393.63 -8.13 -40.11
By element:
Atomic # 1 Polarization: 9.29 SS G_CDS: -7.28 Total: 2.01 kcal
Atomic # 6 Polarization: -7.37 SS G_CDS: -1.88 Total: -9.25 kcal
Atomic # 7 Polarization: -46.71 SS G_CDS: 0.78 Total: -45.94 kcal
Atomic # 8 Polarization: -8.71 SS G_CDS: -0.65 Total: -9.37 kcal
Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -31.98 -8.13 -40.11 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000560360608.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.692 kcal
(2) G-P(sol) polarization free energy of solvation -31.980 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.672 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.802 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds