Wall clock time and date at job start Tue Mar 31 2020 12:37:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42903 * 114.00080 * 2 1
4 4 C 1.53002 * 109.47271 * 179.97438 * 3 2 1
5 5 O 1.42904 * 109.47009 * 65.00145 * 4 3 2
6 6 C 1.35898 * 116.99940 * 179.97438 * 5 4 3
7 7 C 1.38747 * 120.05546 * 0.02562 * 6 5 4
8 8 C 1.38125 * 119.94590 * 179.97438 * 7 6 5
9 9 C 1.38289 * 120.05159 * 359.97438 * 8 7 6
10 10 C 1.38243 * 120.11362 * 359.97438 * 9 8 7
11 11 C 1.38163 * 120.05442 * 0.02562 * 10 9 8
12 12 C 1.50706 * 120.02719 * 180.02562 * 11 10 9
13 13 N 1.46906 * 109.46672 * 259.97381 * 12 11 10
14 14 C 1.46898 * 110.99969 * 179.97438 * 13 12 11
15 15 C 1.52995 * 109.47373 * 179.97438 * 14 13 12
16 16 H 1.09002 * 109.46841 * 55.00394 * 15 14 13
17 17 C 1.47201 * 109.47392 * 295.00373 * 15 14 13
18 18 N 5.67756 * 93.53774 * 302.56088 * 2 1 3
19 19 C 1.52999 * 109.47362 * 175.00128 * 15 14 13
20 20 C 1.50695 * 109.47249 * 185.00225 * 19 15 14
21 21 H 1.08001 * 119.99923 * 359.97438 * 20 19 15
22 22 C 1.37882 * 120.00140 * 179.97438 * 20 19 15
23 23 N 1.31512 * 119.99663 * 0.02562 * 22 20 19
24 24 Si 1.86804 * 119.99957 * 179.97438 * 22 20 19
25 25 H 1.48497 * 109.47092 * 60.00138 * 24 22 20
26 26 H 1.48505 * 109.46874 * 180.02562 * 24 22 20
27 27 H 1.48500 * 109.47132 * 299.99993 * 24 22 20
28 28 H 1.08990 * 109.46898 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.46754 * 299.99706 * 1 2 3
30 30 H 1.09000 * 109.46900 * 59.99327 * 1 2 3
31 31 H 1.09005 * 109.46928 * 60.00099 * 3 2 1
32 32 H 1.08996 * 109.47285 * 300.00545 * 3 2 1
33 33 H 1.08999 * 109.47276 * 305.00220 * 4 3 2
34 34 H 1.08995 * 109.46990 * 185.00262 * 4 3 2
35 35 H 1.08000 * 120.03041 * 359.95195 * 7 6 5
36 36 H 1.07993 * 119.97844 * 179.72247 * 8 7 6
37 37 H 1.08004 * 119.94552 * 179.97438 * 9 8 7
38 38 H 1.08001 * 119.97523 * 179.97438 * 10 9 8
39 39 H 1.08993 * 109.47379 * 19.96866 * 12 11 10
40 40 H 1.08998 * 109.47588 * 139.97808 * 12 11 10
41 41 H 1.00903 * 110.99722 * 303.95123 * 13 12 11
42 42 H 1.09005 * 109.47243 * 300.00503 * 14 13 12
43 43 H 1.09005 * 109.46701 * 59.99653 * 14 13 12
44 44 H 1.08999 * 109.47196 * 305.00379 * 19 15 14
45 45 H 1.09000 * 109.47055 * 65.00153 * 19 15 14
46 46 H 0.97004 * 119.99652 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5355 1.1847 0.0006
5 8 3.9659 0.5793 -1.2202
6 6 5.3031 0.3983 -1.3812
7 6 6.1830 0.7949 -0.3844
8 6 7.5417 0.6095 -0.5502
9 6 8.0251 0.0286 -1.7084
10 6 7.1504 -0.3683 -2.7026
11 6 5.7905 -0.1850 -2.5415
12 6 4.8374 -0.6185 -3.6254
13 7 4.4393 0.5492 -4.4230
14 6 3.5086 0.1639 -5.4923
15 6 3.1171 1.4035 -6.2990
16 1 4.0170 1.8987 -6.6637
17 6 2.3613 2.3295 -5.4398
18 7 1.7793 3.0498 -4.7760
19 6 2.2480 0.9855 -7.4868
20 6 1.9643 2.1881 -8.3494
21 1 2.3636 3.1541 -8.0775
22 6 1.1950 2.0553 -9.4860
23 7 0.7084 0.8792 -9.8168
24 14 0.8428 3.5463 -10.5549
25 1 2.1225 4.1123 -11.0520
26 1 -0.0006 3.1405 -11.7079
27 1 0.1261 4.5712 -9.7543
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 1.6886 1.8464 0.8900
32 1 1.6886 1.8464 -0.8899
33 1 3.8508 0.5685 0.8427
34 1 3.9784 2.1765 0.0903
35 1 5.8060 1.2485 0.5203
36 1 8.2273 0.9220 0.2234
37 1 9.0878 -0.1152 -1.8364
38 1 7.5304 -0.8214 -3.6063
39 1 5.3275 -1.3484 -4.2696
40 1 3.9533 -1.0682 -3.1735
41 1 4.0406 1.2679 -3.8377
42 1 3.9899 -0.5606 -6.1493
43 1 2.6153 -0.2808 -5.0535
44 1 2.7734 0.2327 -8.0743
45 1 1.3086 0.5707 -7.1214
46 1 0.1675 0.7857 -10.6166
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000560360608.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:43
Heat of formation + Delta-G solvation = -63.568665 kcal
Electronic energy + Delta-G solvation = -26066.014344 eV
Core-core repulsion = 22340.912169 eV
Total energy + Delta-G solvation = -3725.102175 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.25536 -39.21094 -38.78052 -38.04703 -36.56372 -35.46703 -33.79140 -32.12156
-31.69226 -30.34870 -28.48690 -27.35050 -26.10021 -24.67828 -23.93275 -23.56865
-22.54471 -22.02812 -19.15061 -18.54695 -18.27319 -17.88380 -17.26343 -17.20395
-16.65419 -16.60611 -16.28074 -16.00094 -15.83779 -15.58664 -15.28853 -14.81709
-14.71327 -14.29275 -14.19275 -14.09963 -13.82432 -13.55123 -13.35586 -13.23409
-13.10171 -12.99342 -12.70983 -12.64744 -12.46488 -12.39054 -12.35190 -12.24593
-11.95229 -11.85953 -11.66747 -11.39644 -11.15012 -10.77852 -10.54944 -9.82220
-9.40912 -9.04088 -8.19198 -6.27752 0.41682 0.55549 1.41127 1.42428
1.49896 1.90209 1.92798 2.21841 2.41564 2.69765 2.80617 3.15330
3.23871 3.39799 3.77044 3.88604 3.96236 4.01780 4.13496 4.22920
4.25638 4.26100 4.38738 4.43445 4.43951 4.45498 4.48078 4.62023
4.62296 4.70566 4.76555 4.78165 4.90809 4.96069 4.97314 5.13836
5.41859 5.46710 5.57432 5.61729 5.67814 5.78915 5.93268 5.98805
6.06936 6.20893 6.28292 6.49591 6.73165 6.86415 7.40547 8.91637
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.011847 B = 0.003121 C = 0.002664
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2362.808754 B = 8968.115814 C =10508.977070
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.410 6.410
3 C 0.058 3.942
4 C 0.059 3.941
5 O -0.330 6.330
6 C 0.114 3.886
7 C -0.218 4.218
8 C -0.083 4.083
9 C -0.162 4.162
10 C -0.069 4.069
11 C -0.132 4.132
12 C 0.110 3.890
13 N -0.681 5.681
14 C 0.078 3.922
15 C 0.020 3.980
16 H 0.124 0.876
17 C 0.249 3.751
18 N -0.504 5.504
19 C 0.040 3.960
20 C -0.541 4.541
21 H 0.054 0.946
22 C 0.011 3.989
23 N -0.923 5.923
24 Si 0.950 3.050
25 H -0.262 1.262
26 H -0.281 1.281
27 H -0.281 1.281
28 H 0.096 0.904
29 H 0.062 0.938
30 H 0.033 0.967
31 H 0.101 0.899
32 H 0.042 0.958
33 H 0.081 0.919
34 H 0.095 0.905
35 H 0.142 0.858
36 H 0.149 0.851
37 H 0.147 0.853
38 H 0.145 0.855
39 H 0.097 0.903
40 H 0.026 0.974
41 H 0.331 0.669
42 H 0.110 0.890
43 H 0.026 0.974
44 H 0.038 0.962
45 H -0.001 1.001
46 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.191 -3.889 22.395 25.793
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.330 6.330
3 C -0.018 4.018
4 C -0.016 4.016
5 O -0.244 6.244
6 C 0.069 3.931
7 C -0.237 4.237
8 C -0.101 4.101
9 C -0.180 4.180
10 C -0.088 4.088
11 C -0.133 4.133
12 C -0.018 4.018
13 N -0.311 5.311
14 C -0.052 4.052
15 C -0.002 4.002
16 H 0.141 0.859
17 C -0.067 4.067
18 N -0.181 5.181
19 C 0.001 3.999
20 C -0.579 4.579
21 H 0.072 0.928
22 C -0.188 4.188
23 N -0.563 5.563
24 Si 0.775 3.225
25 H -0.187 1.187
26 H -0.206 1.206
27 H -0.207 1.207
28 H 0.114 0.886
29 H 0.081 0.919
30 H 0.051 0.949
31 H 0.119 0.881
32 H 0.061 0.939
33 H 0.100 0.900
34 H 0.113 0.887
35 H 0.160 0.840
36 H 0.167 0.833
37 H 0.165 0.835
38 H 0.162 0.838
39 H 0.115 0.885
40 H 0.045 0.955
41 H 0.148 0.852
42 H 0.128 0.872
43 H 0.044 0.956
44 H 0.056 0.944
45 H 0.017 0.983
46 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 11.696 -3.143 22.726 25.752
hybrid contribution -1.579 0.672 -0.386 1.759
sum 10.117 -2.471 22.340 24.649
Atomic orbital electron populations
1.22896 0.79624 1.03807 1.00624 1.87895 1.21295 1.28220 1.95596
1.22722 0.91733 0.85327 1.02041 1.23025 0.93639 0.99065 0.85829
1.86121 1.20600 1.77219 1.40465 1.19170 0.82570 0.96392 0.94994
1.21450 0.94703 1.07500 1.00050 1.21295 0.94445 0.96339 0.98060
1.21390 1.00908 1.01554 0.94177 1.21157 0.90807 0.97302 0.99484
1.19312 0.95284 1.04651 0.94088 1.20680 0.96087 0.92512 0.92545
1.60721 1.44138 1.11391 1.14826 1.21955 0.94352 0.95442 0.93494
1.19241 0.97336 0.91599 0.92041 0.85868 1.29832 0.92195 0.92935
0.91712 1.81122 1.11614 1.11779 1.13608 1.18973 0.93860 0.96376
0.90664 1.21519 1.32097 0.95557 1.08691 0.92807 1.25726 0.95602
0.98377 0.99056 1.70031 1.35501 1.24433 1.26355 0.85733 0.78692
0.79769 0.78292 1.18688 1.20627 1.20697 0.88601 0.91909 0.94853
0.88106 0.93928 0.90046 0.88729 0.84021 0.83296 0.83486 0.83768
0.88470 0.95544 0.85218 0.87151 0.95572 0.94365 0.98294 0.92671
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.51 11.01 113.37 1.25 1.75 16
2 O -0.41 -10.16 10.67 -144.35 -1.54 -11.70 16
3 C 0.06 1.19 6.32 71.98 0.45 1.64 16
4 C 0.06 1.15 5.12 71.98 0.37 1.52 16
5 O -0.33 -8.85 9.28 -87.77 -0.81 -9.67 16
6 C 0.11 2.83 6.66 22.50 0.15 2.98 16
7 C -0.22 -4.22 9.04 22.36 0.20 -4.02 16
8 C -0.08 -1.35 10.04 22.25 0.22 -1.13 16
9 C -0.16 -2.70 10.04 22.28 0.22 -2.48 16
10 C -0.07 -1.38 9.66 22.25 0.22 -1.16 16
11 C -0.13 -3.25 5.41 -19.77 -0.11 -3.36 16
12 C 0.11 2.87 5.48 85.56 0.47 3.34 16
13 N -0.68 -20.11 6.49 -517.92 -3.36 -23.47 16
14 C 0.08 2.45 5.12 86.30 0.44 2.89 16
15 C 0.02 0.75 2.42 -12.60 -0.03 0.72 16
16 H 0.12 4.43 8.14 -2.39 -0.02 4.41 16
17 C 0.25 10.56 12.99 89.40 1.16 11.72 16
18 N -0.50 -22.74 18.56 20.05 0.37 -22.36 16
19 C 0.04 1.91 4.42 29.85 0.13 2.04 16
20 C -0.54 -29.27 8.60 25.60 0.22 -29.05 16
21 H 0.05 2.88 7.59 -2.91 -0.02 2.86 16
22 C 0.01 0.63 5.46 84.66 0.46 1.09 16
23 N -0.92 -53.76 13.29 21.45 0.28 -53.47 16
24 Si 0.95 43.96 29.54 68.60 2.03 45.98 16
25 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16
26 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16
27 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16
28 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16
29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16
30 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16
31 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16
32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16
33 H 0.08 1.35 7.66 -2.39 -0.02 1.33 16
34 H 0.09 1.44 7.66 -2.39 -0.02 1.42 16
35 H 0.14 2.08 6.30 -2.91 -0.02 2.06 16
36 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16
37 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16
38 H 0.14 2.36 8.04 -2.91 -0.02 2.34 16
39 H 0.10 2.16 8.00 -2.39 -0.02 2.14 16
40 H 0.03 0.77 7.85 -2.39 -0.02 0.75 16
41 H 0.33 10.89 7.74 -89.69 -0.69 10.19 16
42 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16
43 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16
44 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16
45 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16
46 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16
Total: -1.00 -68.84 393.63 3.08 -65.76
By element:
Atomic # 1 Polarization: 20.15 SS G_CDS: 0.28 Total: 20.43 kcal
Atomic # 6 Polarization: -17.34 SS G_CDS: 5.83 Total: -11.50 kcal
Atomic # 7 Polarization: -96.60 SS G_CDS: -2.70 Total: -99.31 kcal
Atomic # 8 Polarization: -19.01 SS G_CDS: -2.35 Total: -21.37 kcal
Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal
Total: -68.84 3.08 -65.76 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000560360608.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.193 kcal
(2) G-P(sol) polarization free energy of solvation -68.842 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.649 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.761 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.569 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds