Wall clock time and date at job start Tue Mar 31 2020 12:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38725 * 120.05592 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94620 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05239 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94622 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46762 * 359.97438 * 7 6 5 9 9 C 1.52999 * 109.47143 * 240.00460 * 7 6 5 10 10 O 1.42902 * 109.47641 * 64.99337 * 9 7 6 11 11 C 1.52992 * 109.47467 * 119.99874 * 7 6 5 12 12 N 1.46901 * 109.47399 * 185.00022 * 11 7 6 13 13 C 1.46898 * 111.00075 * 180.02562 * 12 11 7 14 14 C 1.53005 * 109.47109 * 180.02562 * 13 12 11 15 15 H 1.08997 * 109.47106 * 305.00156 * 14 13 12 16 16 C 1.47199 * 109.47210 * 64.99697 * 14 13 12 17 17 N 9.48267 * 150.76757 * 142.32241 * 3 1 2 18 18 C 1.53002 * 109.47069 * 184.99899 * 14 13 12 19 19 C 1.50705 * 109.46778 * 174.99827 * 18 14 13 20 20 H 1.07999 * 119.99897 * 359.97438 * 19 18 14 21 21 C 1.37875 * 119.99942 * 179.97438 * 19 18 14 22 22 N 1.31509 * 120.00378 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99851 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.46978 * 89.99711 * 23 21 19 25 25 H 1.48496 * 109.47540 * 209.99952 * 23 21 19 26 26 H 1.48504 * 109.47333 * 330.00070 * 23 21 19 27 27 C 1.38265 * 120.11333 * 0.02562 * 6 5 4 28 28 C 1.38143 * 120.05412 * 359.97438 * 27 6 5 29 29 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 31 31 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 32 32 H 1.08000 * 120.03004 * 359.96283 * 4 3 2 33 33 H 1.08002 * 119.97573 * 179.72233 * 5 4 3 34 34 H 1.09005 * 109.47349 * 184.99672 * 9 7 6 35 35 H 1.08999 * 109.47154 * 304.99197 * 9 7 6 36 36 H 0.96696 * 114.00326 * 179.97438 * 10 9 7 37 37 H 1.08998 * 109.47158 * 305.00252 * 11 7 6 38 38 H 1.09005 * 109.47170 * 65.00445 * 11 7 6 39 39 H 1.00899 * 110.99713 * 56.04937 * 12 11 7 40 40 H 1.08993 * 109.47332 * 299.99773 * 13 12 11 41 41 H 1.08997 * 109.47260 * 60.00255 * 13 12 11 42 42 H 1.08996 * 109.47080 * 294.99804 * 18 14 13 43 43 H 1.09000 * 109.46995 * 55.00305 * 18 14 13 44 44 H 0.97004 * 120.00398 * 179.97438 * 22 21 19 45 45 H 1.08001 * 119.97578 * 179.97438 * 27 6 5 46 46 H 1.08001 * 120.02739 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0668 4.8755 -0.0017 9 6 3.5746 5.8016 1.2455 10 8 4.0599 5.1309 2.4103 11 6 3.5757 5.7989 -1.2530 12 7 4.3327 7.0563 -1.3159 13 6 3.9634 7.8342 -2.5060 14 6 4.7712 9.1332 -2.5371 15 1 4.6256 9.6740 -1.6020 16 6 6.1995 8.8191 -2.7049 17 7 7.3008 8.5795 -2.8305 18 6 4.2988 9.9997 -3.7062 19 6 5.0070 11.3293 -3.6644 20 1 5.7222 11.5357 -2.8819 21 6 4.7420 12.2821 -4.6250 22 7 5.3604 13.4422 -4.5889 23 14 3.5044 11.9252 -5.9780 24 1 2.1521 12.3518 -5.5369 25 1 3.8832 12.6713 -7.2048 26 1 3.4940 10.4688 -6.2678 27 6 1.9212 3.6047 -0.0021 28 6 1.2916 2.3751 -0.0016 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 4.0208 0.3798 0.0016 33 1 5.1346 2.5749 0.0050 34 1 3.9981 6.8050 1.2010 35 1 2.4876 5.8678 1.2908 36 1 3.8357 5.5728 3.2407 37 1 3.7882 5.2021 -2.1400 38 1 2.5090 6.0189 -1.2100 39 1 5.3262 6.8817 -1.2916 40 1 4.1783 7.2517 -3.4019 41 1 2.8995 8.0682 -2.4713 42 1 4.5256 9.4966 -4.6462 43 1 3.2231 10.1585 -3.6293 44 1 5.1742 14.1124 -5.2649 45 1 1.3343 4.5113 -0.0030 46 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564975267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:37 Heat of formation + Delta-G solvation = -71.923386 kcal Electronic energy + Delta-G solvation = -25450.816862 eV Core-core repulsion = 21725.352399 eV Total energy + Delta-G solvation = -3725.464463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16228 -39.55340 -38.71660 -37.45680 -36.61703 -35.49759 -34.20958 -32.71801 -31.97040 -29.89600 -28.62460 -27.69823 -25.80507 -24.21395 -23.81434 -23.30615 -22.77214 -21.00622 -19.10283 -18.92239 -18.37965 -18.06954 -17.40228 -16.85583 -16.63746 -16.57301 -16.31933 -15.68787 -15.45070 -15.39036 -14.80696 -14.70258 -14.54289 -14.51004 -14.25081 -14.18636 -13.97498 -13.86996 -13.55513 -13.25326 -13.12457 -12.81784 -12.76293 -12.49427 -12.44357 -12.25548 -12.11390 -12.00546 -11.77199 -11.66048 -11.51237 -11.36954 -11.25966 -10.73761 -10.71733 -9.91455 -9.37723 -8.99900 -8.23404 -6.28970 0.42928 0.48274 1.43606 1.46718 1.56698 1.96415 1.97729 2.41627 2.42156 2.79991 3.12525 3.14488 3.25447 3.38214 3.85101 3.92983 4.02098 4.12042 4.22670 4.28432 4.39081 4.40859 4.44111 4.47002 4.51730 4.58031 4.67680 4.72451 4.73810 4.77681 4.84698 4.93815 4.96874 5.01625 5.09135 5.18336 5.26634 5.35818 5.43909 5.48920 5.65076 5.74673 5.85422 6.02516 6.27180 6.30671 6.48507 6.75843 6.81964 7.00792 7.35462 8.93491 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018690 B = 0.002279 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.804983 B =12281.628794 C =12987.693707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.106 3.894 4 C -0.166 4.166 5 C -0.083 4.083 6 C -0.106 4.106 7 C -0.038 4.038 8 H 0.069 0.931 9 C 0.090 3.910 10 O -0.594 6.594 11 C 0.073 3.927 12 N -0.692 5.692 13 C 0.076 3.924 14 C 0.023 3.977 15 H 0.122 0.878 16 C 0.248 3.752 17 N -0.508 5.508 18 C -0.003 4.003 19 C -0.530 4.530 20 H 0.028 0.972 21 C 0.000 4.000 22 N -0.955 5.955 23 Si 0.950 3.050 24 H -0.256 1.256 25 H -0.298 1.298 26 H -0.237 1.237 27 C -0.077 4.077 28 C -0.207 4.207 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.392 0.608 37 H 0.037 0.963 38 H 0.096 0.904 39 H 0.334 0.666 40 H 0.040 0.960 41 H 0.119 0.881 42 H 0.025 0.975 43 H 0.065 0.935 44 H 0.264 0.736 45 H 0.143 0.857 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.970 -25.983 11.502 32.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.061 3.939 4 C -0.184 4.184 5 C -0.101 4.101 6 C -0.107 4.107 7 C -0.057 4.057 8 H 0.088 0.912 9 C 0.013 3.987 10 O -0.402 6.402 11 C -0.056 4.056 12 N -0.322 5.322 13 C -0.054 4.054 14 C 0.002 3.998 15 H 0.139 0.861 16 C -0.068 4.068 17 N -0.185 5.185 18 C -0.042 4.042 19 C -0.568 4.568 20 H 0.046 0.954 21 C -0.196 4.196 22 N -0.596 5.596 23 Si 0.773 3.227 24 H -0.180 1.180 25 H -0.224 1.224 26 H -0.160 1.160 27 C -0.095 4.095 28 C -0.225 4.225 29 H 0.135 0.865 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.241 0.759 37 H 0.055 0.945 38 H 0.114 0.886 39 H 0.151 0.849 40 H 0.058 0.942 41 H 0.137 0.863 42 H 0.044 0.956 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.161 0.839 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.434 -26.466 11.205 32.161 hybrid contribution -0.010 0.690 -0.855 1.098 sum -14.444 -25.776 10.350 31.308 Atomic orbital electron populations 1.23317 0.76568 1.05433 1.02213 1.86033 1.23397 1.27090 1.88882 1.19212 0.92561 0.84796 0.97315 1.20557 0.91958 0.98841 1.07075 1.21010 1.00196 0.91272 0.97660 1.19670 0.93948 0.94353 1.02754 1.20019 0.99824 0.91399 0.94447 0.91225 1.22173 0.97910 0.94723 0.83918 1.86429 1.81094 1.55197 1.17481 1.21952 0.99790 0.88598 0.95250 1.60570 1.10582 1.20080 1.41002 1.22013 1.01169 0.91032 0.91220 1.19134 0.80169 0.97750 1.02787 0.86070 1.29702 0.95653 0.90617 0.90845 1.80976 1.14035 1.12195 1.11325 1.19587 0.98359 0.92569 0.93674 1.21418 1.23983 0.99579 1.11858 0.95357 1.26072 0.98385 0.94466 1.00705 1.70093 1.45085 1.07530 1.36850 0.85666 0.79338 0.80137 0.77571 1.18025 1.22422 1.16009 1.21004 0.93732 0.97820 0.96967 1.21441 1.00995 0.91854 1.08233 0.86537 0.91771 0.91766 0.85053 0.85267 0.92080 0.92549 0.75852 0.94514 0.88578 0.84886 0.94222 0.86308 0.95621 0.91645 0.92719 0.83903 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.10 10.50 -92.40 -0.97 -7.07 16 3 C 0.11 2.04 6.69 22.50 0.15 2.19 16 4 C -0.17 -3.32 9.99 22.36 0.22 -3.09 16 5 C -0.08 -1.66 9.66 22.25 0.22 -1.44 16 6 C -0.11 -1.98 4.55 -19.85 -0.09 -2.07 16 7 C -0.04 -0.68 2.41 -11.54 -0.03 -0.71 16 8 H 0.07 1.44 7.87 -2.38 -0.02 1.42 16 9 C 0.09 1.52 6.27 71.98 0.45 1.97 16 10 O -0.59 -11.07 13.41 -148.98 -2.00 -13.07 16 11 C 0.07 1.23 4.81 86.30 0.42 1.64 16 12 N -0.69 -14.25 5.87 -513.90 -3.02 -17.27 16 13 C 0.08 1.69 5.12 86.31 0.44 2.14 16 14 C 0.02 0.75 2.42 -12.60 -0.03 0.72 16 15 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 16 C 0.25 9.58 12.97 89.46 1.16 10.74 16 17 N -0.51 -22.01 18.52 19.98 0.37 -21.64 16 18 C 0.00 -0.11 3.49 29.85 0.10 -0.01 16 19 C -0.53 -28.28 9.15 25.60 0.23 -28.04 16 20 H 0.03 1.71 7.84 -2.91 -0.02 1.69 16 21 C 0.00 0.01 5.47 84.65 0.46 0.47 16 22 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 23 Si 0.95 40.97 27.47 68.60 1.88 42.85 16 24 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 25 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.24 -9.10 6.54 99.48 0.65 -8.45 16 27 C -0.08 -1.24 8.70 22.25 0.19 -1.04 16 28 C -0.21 -3.29 9.04 22.37 0.20 -3.09 16 29 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.47 7.67 -2.39 -0.02 0.45 16 31 H 0.06 0.47 7.66 -2.38 -0.02 0.45 16 32 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 33 H 0.13 2.36 7.94 -2.91 -0.02 2.34 16 34 H 0.06 1.11 7.62 -2.38 -0.02 1.09 16 35 H 0.06 0.79 7.22 -2.39 -0.02 0.77 16 36 H 0.39 4.06 9.12 -74.06 -0.68 3.38 16 37 H 0.04 0.65 8.14 -2.39 -0.02 0.64 16 38 H 0.10 1.31 7.57 -2.38 -0.02 1.29 16 39 H 0.33 7.82 7.81 -89.69 -0.70 7.12 16 40 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.03 1.01 7.20 -2.39 -0.02 0.99 16 43 H 0.07 2.23 7.57 -2.39 -0.02 2.21 16 44 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.14 1.66 7.12 -2.91 -0.02 1.64 16 46 H 0.15 1.59 6.30 -2.91 -0.02 1.57 16 Total: -1.00 -73.78 384.61 1.36 -72.43 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -0.43 Total: 20.69 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 5.22 Total: -18.34 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -2.35 Total: -97.49 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -2.97 Total: -20.14 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.88 Total: 42.85 kcal Total: -73.78 1.36 -72.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564975267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.504 kcal (2) G-P(sol) polarization free energy of solvation -73.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds