Wall clock time and date at job start Tue Mar 31 2020 12:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35911 * 116.99858 * 2 1 4 4 C 1.39136 * 120.47231 * 179.97438 * 3 2 1 5 5 C 1.38545 * 118.37332 * 179.69707 * 4 3 2 6 6 C 1.38251 * 119.21857 * 0.27640 * 5 4 3 7 7 C 1.50702 * 119.55436 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47010 * 125.00156 * 7 6 5 9 9 O 1.21285 * 120.00047 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.46929 * 120.62998 * 359.71749 * 10 8 7 12 12 C 1.53620 * 108.54234 * 126.37190 * 11 10 8 13 13 C 1.53034 * 109.24398 * 54.85710 * 12 11 10 14 14 C 1.53003 * 109.46259 * 178.48938 * 13 12 11 15 15 C 1.50702 * 109.46962 * 295.06941 * 14 13 12 16 16 H 1.07998 * 119.99932 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99643 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00269 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99813 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47033 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47010 * 119.99720 * 19 17 15 22 22 H 1.48500 * 109.47059 * 239.99863 * 19 17 15 23 23 C 1.53043 * 109.53502 * 298.51031 * 13 12 11 24 24 C 1.46926 * 120.62993 * 180.02562 * 10 8 7 25 25 N 1.31842 * 120.88969 * 359.97438 * 6 5 4 26 26 C 1.31846 * 121.78127 * 359.97438 * 25 6 5 27 27 H 1.08998 * 109.47071 * 300.00270 * 1 2 3 28 28 H 1.09000 * 109.47025 * 60.00190 * 1 2 3 29 29 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.81609 * 359.97438 * 4 3 2 31 31 H 1.07999 * 120.38409 * 180.29621 * 5 4 3 32 32 H 1.08994 * 109.47425 * 245.00191 * 7 6 5 33 33 H 1.08998 * 109.47113 * 5.00393 * 7 6 5 34 34 H 1.08999 * 109.58568 * 246.20994 * 11 10 8 35 35 H 1.09003 * 109.58426 * 6.62580 * 11 10 8 36 36 H 1.08998 * 109.63278 * 294.86080 * 12 11 10 37 37 H 1.09005 * 109.45694 * 174.74186 * 12 11 10 38 38 H 1.09003 * 109.45347 * 58.52416 * 13 12 11 39 39 H 1.09001 * 109.46662 * 55.06566 * 14 13 12 40 40 H 1.08993 * 109.47249 * 175.06533 * 14 13 12 41 41 H 0.97001 * 120.00010 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.49847 * 301.40799 * 23 13 12 43 43 H 1.08999 * 109.52134 * 181.33364 * 23 13 12 44 44 H 1.09001 * 109.58629 * 353.36656 * 24 10 8 45 45 H 1.09003 * 109.58558 * 113.65611 * 24 10 8 46 46 H 1.07995 * 119.65565 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5519 -0.0059 6 6 3.2079 3.6721 -0.0068 7 6 3.8343 5.0427 -0.0144 8 6 3.2972 5.8341 -1.1791 9 8 2.4860 5.3341 -1.9294 10 7 3.7192 7.0970 -1.3876 11 6 4.6977 7.7180 -0.4844 12 6 5.8707 8.2463 -1.3239 13 6 5.3335 9.1834 -2.4080 14 6 6.5013 9.7420 -3.2235 15 6 7.3636 10.6056 -2.3394 16 1 7.1044 10.7426 -1.3000 17 6 8.4835 11.2208 -2.8576 18 7 8.7994 11.0535 -4.1232 19 14 9.5521 12.2918 -1.7619 20 1 8.9841 12.3183 -0.3900 21 1 10.9286 11.7365 -1.7176 22 1 9.5925 13.6725 -2.3071 23 6 4.3904 8.4094 -3.3320 24 6 3.2043 7.8812 -2.5183 25 7 1.8944 3.5574 -0.0021 26 6 1.3002 2.3805 0.0031 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 4.0433 0.4030 0.0014 31 1 5.0932 2.6551 -0.0105 32 1 3.5942 5.5572 0.9160 33 1 4.9161 4.9472 -0.1081 34 1 4.2280 8.5425 0.0519 35 1 5.0604 6.9762 0.2271 36 1 6.3924 7.4109 -1.7909 37 1 6.5608 8.7922 -0.6805 38 1 4.7907 10.0052 -1.9410 39 1 7.0959 8.9181 -3.6180 40 1 6.1149 10.3392 -4.0494 41 1 9.5875 11.4860 -4.4876 42 1 4.9260 7.5725 -3.7802 43 1 4.0264 9.0711 -4.1180 44 1 2.5815 7.2471 -3.1493 45 1 2.6135 8.7174 -2.1442 46 1 0.2216 2.3265 0.0064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565602513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:00 Heat of formation + Delta-G solvation = -50.160348 kcal Electronic energy + Delta-G solvation = -26104.084081 eV Core-core repulsion = 22379.563334 eV Total energy + Delta-G solvation = -3724.520747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.98069 -39.87175 -38.44366 -37.15405 -33.98024 -32.78235 -32.62673 -32.00249 -30.69900 -28.62893 -27.95569 -27.23161 -24.60061 -23.63994 -22.93375 -22.50776 -21.54251 -19.79768 -18.63997 -18.40298 -17.42304 -16.85650 -16.35037 -16.24945 -16.15372 -15.31428 -15.27285 -14.55885 -14.49322 -14.43872 -14.00570 -13.69806 -13.49410 -13.26483 -13.09992 -12.89966 -12.76990 -12.46066 -12.27950 -12.14678 -12.05267 -11.75189 -11.63351 -11.19589 -10.96810 -10.79687 -10.70270 -10.45681 -10.10390 -9.94325 -9.74666 -9.60046 -9.46533 -9.25862 -8.96302 -8.57500 -8.37289 -8.28090 -6.01229 -4.03301 0.88749 1.08852 2.82547 2.85149 3.15773 3.28829 3.36973 3.39541 3.62609 4.09539 4.39449 4.43719 4.44214 4.59420 4.72800 4.76226 4.87641 5.03854 5.11751 5.14933 5.25020 5.26976 5.33800 5.41572 5.43826 5.51084 5.55720 5.67594 5.71379 5.80037 5.85986 6.02176 6.11015 6.24257 6.39803 6.40567 6.53740 6.72111 6.88598 6.97390 6.99905 7.10783 7.63343 7.66503 7.80878 7.84412 7.98748 8.39553 8.40952 9.03590 9.60616 11.09992 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.030099 B = 0.002238 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.028500 B =12506.852013 C =12897.224758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.069 3.931 4 C -0.109 4.109 5 C -0.125 4.125 6 C 0.110 3.890 7 C -0.088 4.088 8 C 0.520 3.480 9 O -0.534 6.534 10 N -0.608 5.608 11 C 0.102 3.898 12 C -0.119 4.119 13 C -0.081 4.081 14 C 0.027 3.973 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.129 4.129 24 C 0.114 3.886 25 N -0.420 5.420 26 C 0.025 3.975 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.482 -18.983 10.919 25.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.022 3.978 4 C -0.135 4.135 5 C -0.145 4.145 6 C -0.029 4.029 7 C -0.128 4.128 8 C 0.307 3.693 9 O -0.411 6.411 10 N -0.342 5.342 11 C -0.020 4.020 12 C -0.157 4.157 13 C -0.100 4.100 14 C -0.010 4.010 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.167 4.167 24 C -0.008 4.008 25 N -0.129 5.129 26 C -0.134 4.134 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.160 0.840 31 H 0.161 0.839 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.228 -18.655 10.384 25.657 hybrid contribution 1.050 0.082 0.468 1.153 sum -13.178 -18.573 10.852 25.227 Atomic orbital electron populations 1.23117 0.78016 1.04255 1.01714 1.86059 1.21659 1.26189 1.88717 1.20094 0.93319 0.85717 0.98665 1.20861 0.91642 0.98738 1.02249 1.21828 1.01417 0.91608 0.99600 1.20500 0.89224 0.94395 0.98815 1.20586 1.01191 0.91657 0.99387 1.20188 0.81649 0.81419 0.86054 1.90689 1.33529 1.69379 1.47496 1.48150 1.43605 1.13185 1.29275 1.22042 0.90103 0.97691 0.92185 1.21978 0.95991 0.99482 0.98246 1.21189 0.97339 0.95879 0.95545 1.19133 0.91434 0.95628 0.94828 1.21274 1.08884 1.28787 0.96409 0.92521 1.25035 0.97812 0.96770 0.94947 1.69975 1.26530 1.44169 1.12768 0.86590 0.80463 0.80404 0.80842 1.19753 1.21114 1.21128 1.22027 0.96144 1.00153 0.98370 1.21634 0.96586 0.94732 0.87845 1.67292 1.11504 1.26239 1.07892 1.22863 1.00425 0.86971 1.03144 0.92405 0.92294 0.87962 0.83984 0.83874 0.87239 0.87209 0.91453 0.90494 0.92242 0.89722 0.92354 0.96645 0.96609 0.93109 0.92145 0.91242 0.89818 0.91962 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.13 16 2 O -0.31 -2.96 10.51 -19.46 -0.20 -3.16 16 3 C 0.07 0.74 6.71 -39.08 -0.26 0.48 16 4 C -0.11 -1.07 10.13 -39.13 -0.40 -1.47 16 5 C -0.12 -1.26 9.70 -39.46 -0.38 -1.64 16 6 C 0.11 1.36 5.76 -82.58 -0.48 0.88 16 7 C -0.09 -0.98 4.44 -29.03 -0.13 -1.11 16 8 C 0.52 7.83 7.63 -10.98 -0.08 7.75 16 9 O -0.53 -10.01 14.74 5.55 0.08 -9.93 16 10 N -0.61 -8.86 2.97 -172.47 -0.51 -9.37 16 11 C 0.10 1.32 6.37 -3.49 -0.02 1.30 16 12 C -0.12 -1.96 5.21 -26.39 -0.14 -2.10 16 13 C -0.08 -1.54 2.10 -90.58 -0.19 -1.73 16 14 C 0.03 0.66 4.45 -27.88 -0.12 0.53 16 15 C -0.52 -13.77 8.39 -34.44 -0.29 -14.06 16 16 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 19 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 23 C -0.13 -2.18 5.36 -26.59 -0.14 -2.32 16 24 C 0.11 1.75 6.43 -3.69 -0.02 1.72 16 25 N -0.42 -5.86 9.21 -9.35 -0.09 -5.95 16 26 C 0.02 0.29 10.22 -17.37 -0.18 0.11 16 27 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 28 H 0.06 0.31 7.69 -51.93 -0.40 -0.09 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.14 1.03 7.95 -52.49 -0.42 0.61 16 32 H 0.11 1.02 7.93 -51.93 -0.41 0.61 16 33 H 0.11 0.95 7.43 -51.93 -0.39 0.56 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.77 5.93 -51.93 -0.31 0.46 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.48 6.91 -51.93 -0.36 1.12 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.08 1.34 7.00 -51.93 -0.36 0.98 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.16 1.41 6.32 -52.49 -0.33 1.08 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -34.32 371.29 -8.46 -42.77 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -7.11 Total: -1.24 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -1.94 Total: -9.08 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.14 Total: -40.98 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.12 Total: -13.09 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.32 -8.46 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565602513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.386 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds