Wall clock time and date at job start Tue Mar 31 2020 12:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35911 * 116.99858 * 2 1 4 4 C 1.39136 * 120.47231 * 179.97438 * 3 2 1 5 5 C 1.38545 * 118.37332 * 179.69707 * 4 3 2 6 6 C 1.38251 * 119.21857 * 0.27640 * 5 4 3 7 7 C 1.50702 * 119.55436 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47010 * 125.00156 * 7 6 5 9 9 O 1.21285 * 120.00047 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.46929 * 120.62998 * 359.71749 * 10 8 7 12 12 C 1.53620 * 108.54234 * 126.37190 * 11 10 8 13 13 C 1.53034 * 109.24398 * 54.85710 * 12 11 10 14 14 C 1.53003 * 109.46259 * 178.48938 * 13 12 11 15 15 C 1.50702 * 109.46962 * 295.06941 * 14 13 12 16 16 H 1.07998 * 119.99932 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99643 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00269 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99813 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47033 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47010 * 119.99720 * 19 17 15 22 22 H 1.48500 * 109.47059 * 239.99863 * 19 17 15 23 23 C 1.53043 * 109.53502 * 298.51031 * 13 12 11 24 24 C 1.46926 * 120.62993 * 180.02562 * 10 8 7 25 25 N 1.31842 * 120.88969 * 359.97438 * 6 5 4 26 26 C 1.31846 * 121.78127 * 359.97438 * 25 6 5 27 27 H 1.08998 * 109.47071 * 300.00270 * 1 2 3 28 28 H 1.09000 * 109.47025 * 60.00190 * 1 2 3 29 29 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.81609 * 359.97438 * 4 3 2 31 31 H 1.07999 * 120.38409 * 180.29621 * 5 4 3 32 32 H 1.08994 * 109.47425 * 245.00191 * 7 6 5 33 33 H 1.08998 * 109.47113 * 5.00393 * 7 6 5 34 34 H 1.08999 * 109.58568 * 246.20994 * 11 10 8 35 35 H 1.09003 * 109.58426 * 6.62580 * 11 10 8 36 36 H 1.08998 * 109.63278 * 294.86080 * 12 11 10 37 37 H 1.09005 * 109.45694 * 174.74186 * 12 11 10 38 38 H 1.09003 * 109.45347 * 58.52416 * 13 12 11 39 39 H 1.09001 * 109.46662 * 55.06566 * 14 13 12 40 40 H 1.08993 * 109.47249 * 175.06533 * 14 13 12 41 41 H 0.97001 * 120.00010 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.49847 * 301.40799 * 23 13 12 43 43 H 1.08999 * 109.52134 * 181.33364 * 23 13 12 44 44 H 1.09001 * 109.58629 * 353.36656 * 24 10 8 45 45 H 1.09003 * 109.58558 * 113.65611 * 24 10 8 46 46 H 1.07995 * 119.65565 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5519 -0.0059 6 6 3.2079 3.6721 -0.0068 7 6 3.8343 5.0427 -0.0144 8 6 3.2972 5.8341 -1.1791 9 8 2.4860 5.3341 -1.9294 10 7 3.7192 7.0970 -1.3876 11 6 4.6977 7.7180 -0.4844 12 6 5.8707 8.2463 -1.3239 13 6 5.3335 9.1834 -2.4080 14 6 6.5013 9.7420 -3.2235 15 6 7.3636 10.6056 -2.3394 16 1 7.1044 10.7426 -1.3000 17 6 8.4835 11.2208 -2.8576 18 7 8.7994 11.0535 -4.1232 19 14 9.5521 12.2918 -1.7619 20 1 8.9841 12.3183 -0.3900 21 1 10.9286 11.7365 -1.7176 22 1 9.5925 13.6725 -2.3071 23 6 4.3904 8.4094 -3.3320 24 6 3.2043 7.8812 -2.5183 25 7 1.8944 3.5574 -0.0021 26 6 1.3002 2.3805 0.0031 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 4.0433 0.4030 0.0014 31 1 5.0932 2.6551 -0.0105 32 1 3.5942 5.5572 0.9160 33 1 4.9161 4.9472 -0.1081 34 1 4.2280 8.5425 0.0519 35 1 5.0604 6.9762 0.2271 36 1 6.3924 7.4109 -1.7909 37 1 6.5608 8.7922 -0.6805 38 1 4.7907 10.0052 -1.9410 39 1 7.0959 8.9181 -3.6180 40 1 6.1149 10.3392 -4.0494 41 1 9.5875 11.4860 -4.4876 42 1 4.9260 7.5725 -3.7802 43 1 4.0264 9.0711 -4.1180 44 1 2.5815 7.2471 -3.1493 45 1 2.6135 8.7174 -2.1442 46 1 0.2216 2.3265 0.0064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565602513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:59 Heat of formation + Delta-G solvation = -71.614337 kcal Electronic energy + Delta-G solvation = -26105.014396 eV Core-core repulsion = 22379.563334 eV Total energy + Delta-G solvation = -3725.451062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.78786 -40.96530 -39.24785 -38.44502 -35.64091 -34.11236 -33.39429 -33.38473 -31.91227 -29.93475 -28.99077 -28.07150 -26.22438 -24.48726 -24.10260 -23.69710 -22.84674 -21.19958 -19.84227 -19.11165 -18.41455 -18.28753 -17.82467 -17.23629 -16.79373 -16.50387 -16.34574 -16.29537 -15.34373 -15.17203 -15.09590 -15.02331 -14.77235 -14.39639 -14.23398 -14.14482 -13.93611 -13.78131 -13.41489 -13.12863 -12.95362 -12.90050 -12.74348 -12.65803 -12.49581 -12.30258 -12.27111 -12.06971 -11.70013 -11.32341 -11.08815 -10.81050 -10.77636 -10.62244 -10.50179 -10.33823 -9.53103 -9.33978 -8.13874 -6.23331 0.11566 0.31614 1.43286 1.44420 1.56583 1.73032 2.07947 2.24467 2.45090 2.79786 3.20077 3.31707 3.65011 3.66989 3.75621 3.97854 4.04380 4.09479 4.18346 4.26269 4.31979 4.35580 4.39015 4.45274 4.52591 4.57332 4.60766 4.68284 4.73000 4.74836 4.86723 4.93101 4.97171 5.00966 5.11592 5.15717 5.35106 5.36774 5.45785 5.52824 5.58732 5.66218 5.85890 5.92729 6.21626 6.31624 6.52678 6.94123 7.04341 7.27224 7.45556 8.98292 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.030099 B = 0.002238 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.028500 B =12506.852013 C =12897.224758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.066 3.934 4 C -0.117 4.117 5 C -0.121 4.121 6 C 0.085 3.915 7 C -0.082 4.082 8 C 0.515 3.485 9 O -0.578 6.578 10 N -0.610 5.610 11 C 0.110 3.890 12 C -0.114 4.114 13 C -0.074 4.074 14 C 0.031 3.969 15 C -0.522 4.522 16 H 0.070 0.930 17 C -0.006 4.006 18 N -0.939 5.939 19 Si 0.961 3.039 20 H -0.255 1.255 21 H -0.282 1.282 22 H -0.286 1.286 23 C -0.120 4.120 24 C 0.121 3.879 25 N -0.456 5.456 26 C 0.007 3.993 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.125 0.875 30 H 0.164 0.836 31 H 0.174 0.826 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.061 0.939 39 H -0.015 1.015 40 H -0.017 1.017 41 H 0.260 0.740 42 H 0.045 0.955 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.269 -19.713 13.719 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.018 3.982 4 C -0.143 4.143 5 C -0.140 4.140 6 C -0.054 4.054 7 C -0.122 4.122 8 C 0.304 3.696 9 O -0.457 6.457 10 N -0.343 5.343 11 C -0.012 4.012 12 C -0.152 4.152 13 C -0.093 4.093 14 C -0.006 4.006 15 C -0.561 4.561 16 H 0.088 0.912 17 C -0.203 4.203 18 N -0.580 5.580 19 Si 0.787 3.213 20 H -0.179 1.179 21 H -0.208 1.208 22 H -0.212 1.212 23 C -0.158 4.158 24 C -0.002 4.002 25 N -0.166 5.166 26 C -0.151 4.151 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.143 0.857 30 H 0.181 0.819 31 H 0.191 0.809 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.101 0.899 35 H 0.135 0.865 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.003 0.997 40 H 0.001 0.999 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.026 -19.388 13.215 27.336 hybrid contribution 0.933 0.253 -0.483 1.081 sum -13.092 -19.136 12.732 26.452 Atomic orbital electron populations 1.23395 0.76255 1.05997 1.02261 1.86049 1.23552 1.25635 1.88478 1.20242 0.93897 0.85883 0.98138 1.21242 0.91698 0.99694 1.01640 1.22153 1.02780 0.90911 0.98168 1.20825 0.89197 0.95594 0.99815 1.20690 1.02571 0.90707 0.98238 1.20919 0.80884 0.81239 0.86536 1.90672 1.35544 1.70185 1.49320 1.48253 1.43721 1.13276 1.29081 1.22113 0.88202 0.99260 0.91577 1.21874 0.97354 0.98417 0.97582 1.21046 0.95494 0.96780 0.95954 1.19036 0.92966 0.94108 0.94467 1.21704 1.08885 1.28333 0.97129 0.91210 1.25997 0.99589 0.98429 0.96306 1.70128 1.27305 1.45662 1.14891 0.85448 0.78371 0.78004 0.79517 1.17854 1.20842 1.21197 1.21897 0.96392 0.99299 0.98248 1.21470 0.95494 0.95078 0.88140 1.67245 1.12747 1.27447 1.09141 1.23094 1.01260 0.86994 1.03763 0.91422 0.92205 0.85657 0.81851 0.80865 0.85011 0.84176 0.89905 0.86511 0.93199 0.90364 0.92015 0.99662 0.99905 0.93144 0.93626 0.91532 0.90841 0.90487 0.81545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.82 113.37 1.11 1.27 16 2 O -0.32 -5.73 10.51 -92.55 -0.97 -6.70 16 3 C 0.07 1.35 6.71 22.60 0.15 1.50 16 4 C -0.12 -2.09 10.13 22.56 0.23 -1.87 16 5 C -0.12 -2.14 9.70 22.35 0.22 -1.92 16 6 C 0.08 1.94 5.76 42.56 0.25 2.19 16 7 C -0.08 -1.59 4.44 29.10 0.13 -1.46 16 8 C 0.51 14.65 7.63 87.66 0.67 15.32 16 9 O -0.58 -21.53 14.74 -3.04 -0.04 -21.57 16 10 N -0.61 -16.56 2.97 -817.97 -2.43 -18.99 16 11 C 0.11 2.47 6.37 86.51 0.55 3.02 16 12 C -0.11 -3.58 5.21 30.81 0.16 -3.42 16 13 C -0.07 -2.81 2.10 -10.77 -0.02 -2.83 16 14 C 0.03 1.59 4.45 29.85 0.13 1.72 16 15 C -0.52 -28.01 8.39 25.60 0.21 -27.80 16 16 H 0.07 3.49 7.06 -2.91 -0.02 3.46 16 17 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 18 N -0.94 -56.74 13.29 21.45 0.28 -56.46 16 19 Si 0.96 42.95 29.54 68.60 2.03 44.97 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 23 C -0.12 -4.11 5.36 30.69 0.16 -3.95 16 24 C 0.12 3.61 6.43 86.38 0.56 4.16 16 25 N -0.46 -12.44 9.21 -183.49 -1.69 -14.13 16 26 C 0.01 0.17 10.22 84.80 0.87 1.03 16 27 H 0.07 0.55 7.67 -2.39 -0.02 0.53 16 28 H 0.06 0.59 7.69 -2.39 -0.02 0.57 16 29 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 31 H 0.17 1.85 7.95 -2.91 -0.02 1.83 16 32 H 0.13 1.94 7.93 -2.39 -0.02 1.92 16 33 H 0.14 1.80 7.43 -2.39 -0.02 1.78 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.12 1.74 5.93 -2.39 -0.01 1.73 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 2.57 6.91 -2.38 -0.02 2.55 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 40 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 41 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.07 2.37 7.00 -2.39 -0.02 2.36 16 45 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.17 3.04 6.32 -2.91 -0.02 3.02 16 Total: -1.00 -77.18 371.29 3.99 -73.20 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.97 Total: 12.60 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 5.84 Total: -12.92 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -3.83 Total: -89.57 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -1.02 Total: -28.27 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -77.18 3.99 -73.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565602513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.584 kcal (2) G-P(sol) polarization free energy of solvation -77.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds