Wall clock time and date at job start Tue Mar 31 2020 12:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99971 * 2 1 4 4 C 1.53001 * 109.46705 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46697 * 179.97438 * 4 3 2 6 6 O 1.42905 * 109.46914 * 180.02562 * 5 4 3 7 7 C 1.36006 * 117.00040 * 180.02562 * 6 5 4 8 8 C 1.38505 * 120.07916 * 359.97438 * 7 6 5 9 9 C 1.38285 * 120.01992 * 179.97438 * 8 7 6 10 10 C 1.38262 * 120.17968 * 0.02562 * 9 8 7 11 11 C 1.38221 * 120.15675 * 359.97438 * 10 9 8 12 12 C 1.38728 * 119.98329 * 0.02562 * 11 10 9 13 13 N 1.39963 * 120.09000 * 180.02562 * 12 11 10 14 14 C 1.46503 * 119.99960 * 359.97438 * 13 12 11 15 15 C 1.53004 * 109.46922 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.46650 * 304.99697 * 15 14 13 17 17 C 1.47197 * 109.47312 * 64.99797 * 15 14 13 18 18 N 8.45469 * 164.60985 * 262.99944 * 2 1 3 19 19 C 1.53003 * 109.46981 * 185.00083 * 15 14 13 20 20 C 1.50694 * 109.47132 * 174.99686 * 19 15 14 21 21 H 1.08004 * 120.00209 * 359.97438 * 20 19 15 22 22 C 1.37871 * 120.00163 * 180.02562 * 20 19 15 23 23 N 1.31519 * 120.00349 * 180.02562 * 22 20 19 24 24 Si 1.86809 * 119.99955 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46917 * 90.00115 * 24 22 20 26 26 H 1.48496 * 109.47197 * 210.00300 * 24 22 20 27 27 H 1.48499 * 109.46745 * 330.00293 * 24 22 20 28 28 H 1.09002 * 109.46723 * 299.99796 * 1 2 3 29 29 H 1.08997 * 109.47254 * 59.99089 * 1 2 3 30 30 H 1.09000 * 109.47645 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46715 * 60.00687 * 3 2 1 32 32 H 1.08993 * 109.47227 * 300.00250 * 3 2 1 33 33 H 1.09010 * 109.47038 * 60.00387 * 4 3 2 34 34 H 1.08993 * 109.47358 * 300.00019 * 4 3 2 35 35 H 1.09004 * 109.46934 * 60.00967 * 5 4 3 36 36 H 1.08993 * 109.47371 * 300.00182 * 5 4 3 37 37 H 1.08003 * 119.99369 * 359.96020 * 8 7 6 38 38 H 1.07997 * 119.91569 * 179.72615 * 9 8 7 39 39 H 1.07999 * 119.91895 * 179.97438 * 10 9 8 40 40 H 1.08003 * 120.01009 * 179.97438 * 11 10 9 41 41 H 0.96996 * 120.00132 * 179.97438 * 13 12 11 42 42 H 1.08996 * 109.47047 * 299.99908 * 14 13 12 43 43 H 1.08996 * 109.47301 * 59.99956 * 14 13 12 44 44 H 1.09003 * 109.46654 * 294.99906 * 19 15 14 45 45 H 1.08997 * 109.47082 * 54.99671 * 19 15 14 46 46 H 0.96998 * 119.99795 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 8 5.5824 2.4695 -0.0025 7 6 6.2936 3.6287 -0.0027 8 6 5.6351 4.8472 -0.0022 9 6 6.3595 6.0251 -0.0018 10 6 7.7417 5.9911 -0.0024 11 6 8.4064 4.7792 -0.0029 12 6 7.6863 3.5935 -0.0033 13 7 8.3572 2.3651 -0.0032 14 6 9.8218 2.3303 -0.0032 15 6 10.2974 0.8761 -0.0038 16 1 9.8501 0.3473 0.8379 17 6 9.8923 0.2278 -1.2617 18 7 9.5805 -0.2735 -2.2271 19 6 11.8217 0.8380 0.1219 20 6 12.2800 -0.5923 0.2450 21 1 11.5564 -1.3940 0.2350 22 6 13.6230 -0.8774 0.3714 23 7 14.0231 -2.1257 0.4783 24 14 14.8746 0.5092 0.3893 25 1 15.0931 0.9608 1.7870 26 1 16.1576 0.0255 -0.1809 27 1 14.3680 1.6438 -0.4240 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8567 0.6438 -0.8910 34 1 3.8574 0.6435 0.8890 35 1 3.8366 3.1234 0.8888 36 1 3.8358 3.1230 -0.8912 37 1 4.5555 4.8774 -0.0024 38 1 5.8443 6.9743 -0.0060 39 1 8.3032 6.9136 -0.0026 40 1 9.4862 4.7554 -0.0038 41 1 7.8524 1.5368 -0.0031 42 1 10.1971 2.8353 -0.8933 43 1 10.1973 2.8355 0.8866 44 1 12.2706 1.2885 -0.7634 45 1 12.1273 1.3949 1.0076 46 1 14.9679 -2.3262 0.5675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567229146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:59 Heat of formation + Delta-G solvation = -41.374530 kcal Electronic energy + Delta-G solvation = -25335.887509 eV Core-core repulsion = 21611.747744 eV Total energy + Delta-G solvation = -3724.139765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31599 -38.49252 -37.86878 -37.07392 -35.12519 -33.68385 -33.28250 -31.92483 -30.04878 -29.20562 -27.53732 -26.73408 -25.55375 -23.93749 -22.33338 -22.15942 -21.50119 -20.93228 -18.39550 -17.37256 -16.97356 -16.90529 -16.86641 -16.43212 -15.98395 -15.83179 -15.31363 -14.85617 -14.62830 -14.28727 -14.08683 -13.95654 -13.66794 -13.33858 -13.23267 -13.02699 -12.54269 -12.48348 -12.26649 -12.21881 -12.11288 -11.78148 -11.61645 -11.54826 -11.44245 -11.29183 -11.03766 -10.88616 -10.87319 -10.49570 -10.10920 -10.07542 -10.00892 -9.84217 -9.38674 -8.65114 -8.55817 -7.12984 -6.13947 -4.15506 1.39367 1.59816 2.76861 3.23982 3.33058 3.33296 3.44360 3.53134 3.60129 3.67608 3.85387 4.35251 4.48541 4.60974 4.63621 4.67521 4.81854 4.86465 4.90713 4.96757 4.98071 5.02480 5.07252 5.17433 5.20390 5.21069 5.27017 5.45607 5.51882 5.56370 5.67536 5.73044 5.82847 5.85810 6.09029 6.12955 6.19351 6.32781 6.59252 6.70695 6.76403 6.84887 7.04214 7.08178 7.52142 7.59502 7.85559 8.30213 8.38019 8.88699 9.45161 10.98979 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011786 B = 0.002697 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.097773 B =10378.790909 C =12391.614544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.067 3.933 4 C -0.122 4.122 5 C 0.071 3.929 6 O -0.316 6.316 7 C 0.051 3.949 8 C -0.164 4.164 9 C -0.151 4.151 10 C -0.103 4.103 11 C -0.171 4.171 12 C 0.206 3.794 13 N -0.741 5.741 14 C 0.129 3.871 15 C 0.007 3.993 16 H 0.113 0.887 17 C 0.236 3.764 18 N -0.457 5.457 19 C -0.002 4.002 20 C -0.530 4.530 21 H 0.074 0.926 22 C 0.072 3.928 23 N -0.895 5.895 24 Si 0.878 3.122 25 H -0.274 1.274 26 H -0.287 1.287 27 H -0.263 1.263 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.405 0.595 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.028 0.972 45 H 0.037 0.963 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.177 16.246 2.132 28.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.010 4.010 4 C -0.160 4.160 5 C -0.005 4.005 6 O -0.231 6.231 7 C 0.003 3.997 8 C -0.183 4.183 9 C -0.171 4.171 10 C -0.122 4.122 11 C -0.194 4.194 12 C 0.101 3.899 13 N -0.372 5.372 14 C 0.004 3.996 15 C -0.015 4.015 16 H 0.131 0.869 17 C -0.082 4.082 18 N -0.133 5.133 19 C -0.041 4.041 20 C -0.568 4.568 21 H 0.092 0.908 22 C -0.131 4.131 23 N -0.533 5.533 24 Si 0.705 3.295 25 H -0.199 1.199 26 H -0.213 1.213 27 H -0.188 1.188 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.148 0.852 41 H 0.241 0.759 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.046 0.954 45 H 0.055 0.945 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.096 14.993 0.686 27.544 hybrid contribution 0.344 0.800 0.391 0.954 sum -22.753 15.793 1.078 27.717 Atomic orbital electron populations 1.22764 0.80686 1.03023 1.00007 1.87895 1.19931 1.27560 1.95426 1.22312 0.93185 0.85053 1.00453 1.21381 0.92840 0.96357 1.05383 1.22461 0.79229 0.97560 1.01252 1.85959 1.18553 1.28622 1.89925 1.18393 0.89572 0.85323 1.06406 1.20926 0.99541 0.91687 1.06150 1.20627 0.94006 0.97088 1.05375 1.20801 0.94172 0.97132 1.00121 1.20563 0.99855 0.90361 1.08653 1.17227 0.87623 0.87343 0.97682 1.44746 1.05540 1.05115 1.81766 1.21541 0.79530 0.96222 1.02274 1.19199 1.00876 0.92246 0.89151 0.86922 1.28727 0.91932 0.93051 0.94445 1.80862 1.10670 1.09384 1.12434 1.19614 0.86934 0.99516 0.98053 1.20988 0.93536 0.90668 1.51619 0.90769 1.24992 0.98445 0.95463 0.94202 1.69904 1.16028 1.18010 1.49374 0.86813 0.81086 0.82837 0.78811 1.19946 1.21281 1.18788 0.93970 0.93991 0.89397 0.92968 0.93010 0.89788 0.89727 0.92087 0.92175 0.86019 0.86532 0.86187 0.85150 0.75932 0.91684 0.90230 0.95417 0.94489 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.73 10.70 -35.23 -0.38 -4.11 16 3 C 0.07 0.50 5.94 37.16 0.22 0.72 16 4 C -0.12 -1.09 5.95 -26.73 -0.16 -1.24 16 5 C 0.07 0.63 4.74 37.16 0.18 0.80 16 6 O -0.32 -3.92 9.38 -19.76 -0.19 -4.11 16 7 C 0.05 0.65 6.70 -39.08 -0.26 0.38 16 8 C -0.16 -1.75 9.04 -39.47 -0.36 -2.10 16 9 C -0.15 -1.52 10.04 -39.56 -0.40 -1.92 16 10 C -0.10 -1.08 10.04 -39.58 -0.40 -1.48 16 11 C -0.17 -2.04 9.31 -39.41 -0.37 -2.40 16 12 C 0.21 2.73 6.67 -83.56 -0.56 2.18 16 13 N -0.74 -10.19 5.52 -58.49 -0.32 -10.52 16 14 C 0.13 1.78 4.28 -4.04 -0.02 1.76 16 15 C 0.01 0.12 2.26 -93.40 -0.21 -0.09 16 16 H 0.11 1.83 8.14 -51.93 -0.42 1.40 16 17 C 0.24 4.73 13.44 -20.91 -0.28 4.45 16 18 N -0.46 -10.14 18.51 41.98 0.78 -9.36 16 19 C 0.00 -0.05 3.49 -27.88 -0.10 -0.14 16 20 C -0.53 -14.06 9.15 -34.44 -0.32 -14.37 16 21 H 0.07 2.17 7.84 -52.48 -0.41 1.76 16 22 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 23 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 24 Si 0.88 20.33 27.47 -169.99 -4.67 15.66 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 36 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 37 H 0.12 1.02 6.30 -52.48 -0.33 0.68 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.13 1.41 6.74 -52.48 -0.35 1.06 16 41 H 0.41 5.79 7.58 -40.82 -0.31 5.48 16 42 H 0.06 0.88 7.95 -51.93 -0.41 0.47 16 43 H 0.08 0.95 7.95 -51.93 -0.41 0.54 16 44 H 0.03 0.58 7.20 -51.93 -0.37 0.21 16 45 H 0.04 0.70 7.57 -51.93 -0.39 0.31 16 46 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -32.60 387.84 -7.35 -39.96 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.19 Total: 2.94 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -2.01 Total: -10.26 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 1.23 Total: -45.93 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.56 Total: -8.22 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.60 -7.35 -39.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567229146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.416 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds