Wall clock time and date at job start Tue Mar 31 2020 12:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99971 * 2 1 4 4 C 1.53001 * 109.46705 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46697 * 179.97438 * 4 3 2 6 6 O 1.42905 * 109.46914 * 180.02562 * 5 4 3 7 7 C 1.36006 * 117.00040 * 180.02562 * 6 5 4 8 8 C 1.38505 * 120.07916 * 359.97438 * 7 6 5 9 9 C 1.38285 * 120.01992 * 179.97438 * 8 7 6 10 10 C 1.38262 * 120.17968 * 0.02562 * 9 8 7 11 11 C 1.38221 * 120.15675 * 359.97438 * 10 9 8 12 12 C 1.38728 * 119.98329 * 0.02562 * 11 10 9 13 13 N 1.39963 * 120.09000 * 180.02562 * 12 11 10 14 14 C 1.46503 * 119.99960 * 359.97438 * 13 12 11 15 15 C 1.53004 * 109.46922 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.46650 * 304.99697 * 15 14 13 17 17 C 1.47197 * 109.47312 * 64.99797 * 15 14 13 18 18 N 8.45469 * 164.60985 * 262.99944 * 2 1 3 19 19 C 1.53003 * 109.46981 * 185.00083 * 15 14 13 20 20 C 1.50694 * 109.47132 * 174.99686 * 19 15 14 21 21 H 1.08004 * 120.00209 * 359.97438 * 20 19 15 22 22 C 1.37871 * 120.00163 * 180.02562 * 20 19 15 23 23 N 1.31519 * 120.00349 * 180.02562 * 22 20 19 24 24 Si 1.86809 * 119.99955 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46917 * 90.00115 * 24 22 20 26 26 H 1.48496 * 109.47197 * 210.00300 * 24 22 20 27 27 H 1.48499 * 109.46745 * 330.00293 * 24 22 20 28 28 H 1.09002 * 109.46723 * 299.99796 * 1 2 3 29 29 H 1.08997 * 109.47254 * 59.99089 * 1 2 3 30 30 H 1.09000 * 109.47645 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46715 * 60.00687 * 3 2 1 32 32 H 1.08993 * 109.47227 * 300.00250 * 3 2 1 33 33 H 1.09010 * 109.47038 * 60.00387 * 4 3 2 34 34 H 1.08993 * 109.47358 * 300.00019 * 4 3 2 35 35 H 1.09004 * 109.46934 * 60.00967 * 5 4 3 36 36 H 1.08993 * 109.47371 * 300.00182 * 5 4 3 37 37 H 1.08003 * 119.99369 * 359.96020 * 8 7 6 38 38 H 1.07997 * 119.91569 * 179.72615 * 9 8 7 39 39 H 1.07999 * 119.91895 * 179.97438 * 10 9 8 40 40 H 1.08003 * 120.01009 * 179.97438 * 11 10 9 41 41 H 0.96996 * 120.00132 * 179.97438 * 13 12 11 42 42 H 1.08996 * 109.47047 * 299.99908 * 14 13 12 43 43 H 1.08996 * 109.47301 * 59.99956 * 14 13 12 44 44 H 1.09003 * 109.46654 * 294.99906 * 19 15 14 45 45 H 1.08997 * 109.47082 * 54.99671 * 19 15 14 46 46 H 0.96998 * 119.99795 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 8 5.5824 2.4695 -0.0025 7 6 6.2936 3.6287 -0.0027 8 6 5.6351 4.8472 -0.0022 9 6 6.3595 6.0251 -0.0018 10 6 7.7417 5.9911 -0.0024 11 6 8.4064 4.7792 -0.0029 12 6 7.6863 3.5935 -0.0033 13 7 8.3572 2.3651 -0.0032 14 6 9.8218 2.3303 -0.0032 15 6 10.2974 0.8761 -0.0038 16 1 9.8501 0.3473 0.8379 17 6 9.8923 0.2278 -1.2617 18 7 9.5805 -0.2735 -2.2271 19 6 11.8217 0.8380 0.1219 20 6 12.2800 -0.5923 0.2450 21 1 11.5564 -1.3940 0.2350 22 6 13.6230 -0.8774 0.3714 23 7 14.0231 -2.1257 0.4783 24 14 14.8746 0.5092 0.3893 25 1 15.0931 0.9608 1.7870 26 1 16.1576 0.0255 -0.1809 27 1 14.3680 1.6438 -0.4240 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8567 0.6438 -0.8910 34 1 3.8574 0.6435 0.8890 35 1 3.8366 3.1234 0.8888 36 1 3.8358 3.1230 -0.8912 37 1 4.5555 4.8774 -0.0024 38 1 5.8443 6.9743 -0.0060 39 1 8.3032 6.9136 -0.0026 40 1 9.4862 4.7554 -0.0038 41 1 7.8524 1.5368 -0.0031 42 1 10.1971 2.8353 -0.8933 43 1 10.1973 2.8355 0.8866 44 1 12.2706 1.2885 -0.7634 45 1 12.1273 1.3949 1.0076 46 1 14.9679 -2.3262 0.5675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567229146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:58 Heat of formation + Delta-G solvation = -62.077633 kcal Electronic energy + Delta-G solvation = -25336.785263 eV Core-core repulsion = 21611.747744 eV Total energy + Delta-G solvation = -3725.037519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14500 -39.26185 -38.86311 -38.17526 -36.42317 -35.34046 -34.07137 -33.58955 -30.86529 -30.38430 -28.31527 -27.94821 -26.19670 -25.11692 -23.49471 -23.11879 -22.76296 -21.78294 -19.27754 -18.93200 -18.52372 -17.86818 -17.55337 -17.18785 -17.02545 -16.50398 -16.30273 -15.93853 -15.63467 -15.38570 -15.28814 -14.95443 -14.81877 -14.58981 -14.35233 -14.17274 -14.07239 -13.93621 -13.41941 -13.20471 -12.95739 -12.84355 -12.78656 -12.55133 -12.43883 -12.27599 -12.17038 -12.10166 -11.85634 -11.67924 -11.59688 -11.59127 -11.34850 -10.91386 -10.72926 -10.67352 -9.37122 -8.24860 -8.04463 -6.31287 0.57894 0.76895 1.44123 1.47090 1.57237 1.89941 1.93938 2.06774 2.41614 2.56061 3.01625 3.03272 3.09417 3.16668 3.83478 3.88472 3.95392 4.04651 4.11337 4.24640 4.29349 4.33059 4.33558 4.43381 4.44986 4.53140 4.53305 4.57856 4.65976 4.75400 4.82150 4.84064 4.85562 4.98875 4.99080 5.09412 5.19797 5.32749 5.40984 5.55241 5.62188 5.79714 5.99235 6.16390 6.20538 6.25895 6.64632 6.69628 6.77571 6.86176 7.33290 8.92019 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011786 B = 0.002697 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.097773 B =10378.790909 C =12391.614544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.068 3.932 4 C -0.119 4.119 5 C 0.069 3.931 6 O -0.340 6.340 7 C 0.033 3.967 8 C -0.167 4.167 9 C -0.149 4.149 10 C -0.108 4.108 11 C -0.179 4.179 12 C 0.178 3.822 13 N -0.750 5.750 14 C 0.142 3.858 15 C 0.014 3.986 16 H 0.121 0.879 17 C 0.248 3.752 18 N -0.502 5.502 19 C 0.000 4.000 20 C -0.533 4.533 21 H 0.027 0.973 22 C 0.001 3.999 23 N -0.955 5.955 24 Si 0.950 3.050 25 H -0.256 1.256 26 H -0.297 1.297 27 H -0.234 1.234 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.398 0.602 42 H 0.069 0.931 43 H 0.106 0.894 44 H 0.033 0.967 45 H 0.069 0.931 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.943 20.435 2.792 31.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.008 4.008 4 C -0.156 4.156 5 C -0.006 4.006 6 O -0.255 6.255 7 C -0.015 4.015 8 C -0.186 4.186 9 C -0.169 4.169 10 C -0.127 4.127 11 C -0.202 4.202 12 C 0.076 3.924 13 N -0.381 5.381 14 C 0.017 3.983 15 C -0.007 4.007 16 H 0.138 0.862 17 C -0.069 4.069 18 N -0.179 5.179 19 C -0.039 4.039 20 C -0.571 4.571 21 H 0.046 0.954 22 C -0.195 4.195 23 N -0.595 5.595 24 Si 0.772 3.228 25 H -0.180 1.180 26 H -0.224 1.224 27 H -0.156 1.156 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.232 0.768 42 H 0.087 0.913 43 H 0.124 0.876 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.907 19.226 1.349 30.708 hybrid contribution 0.439 -0.549 0.186 0.727 sum -23.468 18.677 1.535 30.032 Atomic orbital electron populations 1.22940 0.79073 1.03831 1.01178 1.87845 1.21854 1.28868 1.95689 1.22362 0.91798 0.84678 1.01992 1.21340 0.94279 0.96330 1.03694 1.22612 0.77751 0.97554 1.02660 1.85931 1.20202 1.29240 1.90137 1.18659 0.89717 0.86034 1.07078 1.21240 1.00821 0.91175 1.05360 1.21024 0.94145 0.97967 1.03769 1.21148 0.94688 0.97555 0.99287 1.20809 1.00480 0.90428 1.08435 1.17511 0.88250 0.87391 0.99283 1.44655 1.05274 1.05275 1.82870 1.21425 0.79867 0.93244 1.03746 1.19261 0.98920 0.94737 0.87817 0.86178 1.29405 0.90838 0.92055 0.94607 1.80853 1.12059 1.10913 1.14080 1.19563 0.89025 0.95841 0.99493 1.21367 0.92781 0.92763 1.50178 0.95427 1.26074 1.01184 0.98275 0.93990 1.70095 1.16468 1.21017 1.51925 0.85668 0.77221 0.79789 0.80084 1.18040 1.22351 1.15635 0.92673 0.92879 0.88924 0.91171 0.91565 0.91795 0.91110 0.90297 0.90883 0.83869 0.83920 0.83816 0.84225 0.76765 0.91253 0.87616 0.94909 0.91257 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.96 10.70 -148.98 -1.59 -9.55 16 3 C 0.07 0.95 5.94 71.98 0.43 1.38 16 4 C -0.12 -2.13 5.95 30.60 0.18 -1.95 16 5 C 0.07 1.15 4.74 71.98 0.34 1.50 16 6 O -0.34 -8.36 9.38 -93.62 -0.88 -9.24 16 7 C 0.03 0.79 6.70 22.59 0.15 0.94 16 8 C -0.17 -3.13 9.04 22.34 0.20 -2.93 16 9 C -0.15 -2.50 10.04 22.29 0.22 -2.27 16 10 C -0.11 -1.91 10.04 22.27 0.22 -1.69 16 11 C -0.18 -3.81 9.31 22.38 0.21 -3.60 16 12 C 0.18 4.50 6.67 38.22 0.25 4.76 16 13 N -0.75 -19.95 5.52 -338.97 -1.87 -21.82 16 14 C 0.14 3.59 4.28 86.38 0.37 3.96 16 15 C 0.01 0.48 2.26 -12.60 -0.03 0.45 16 16 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 17 C 0.25 10.04 13.44 89.49 1.20 11.25 16 18 N -0.50 -22.87 18.51 19.95 0.37 -22.50 16 19 C 0.00 -0.01 3.49 29.85 0.10 0.09 16 20 C -0.53 -28.59 9.15 25.60 0.23 -28.36 16 21 H 0.03 1.68 7.84 -2.91 -0.02 1.66 16 22 C 0.00 0.08 5.47 84.65 0.46 0.54 16 23 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 24 Si 0.95 40.96 27.47 68.60 1.88 42.85 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 26 H -0.30 -13.22 7.11 99.48 0.71 -12.52 16 27 H -0.23 -8.88 6.54 99.48 0.65 -8.23 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.02 7.66 -2.38 -0.02 1.00 16 36 H 0.07 1.01 7.66 -2.39 -0.02 0.99 16 37 H 0.14 1.94 6.30 -2.91 -0.02 1.92 16 38 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.14 2.59 6.74 -2.91 -0.02 2.57 16 41 H 0.40 11.49 7.58 -92.71 -0.70 10.78 16 42 H 0.07 1.70 7.95 -2.39 -0.02 1.68 16 43 H 0.11 2.14 7.95 -2.39 -0.02 2.12 16 44 H 0.03 1.28 7.20 -2.39 -0.02 1.27 16 45 H 0.07 2.36 7.57 -2.39 -0.02 2.34 16 46 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -74.00 387.84 4.24 -69.77 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.22 Total: 23.73 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 5.81 Total: -14.39 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -1.20 Total: -103.16 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -2.47 Total: -18.79 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.88 Total: 42.85 kcal Total: -74.00 4.24 -69.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567229146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.690 kcal (2) G-P(sol) polarization free energy of solvation -74.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds