Wall clock time and date at job start Tue Mar 31 2020 12:24:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35980 * 116.99894 * 2 1
4 4 C 1.38696 * 119.99633 * 179.97438 * 3 2 1
5 5 C 1.38137 * 119.99818 * 180.02562 * 4 3 2
6 6 C 1.38698 * 119.99997 * 0.02562 * 5 4 3
7 7 O 1.35980 * 120.00154 * 179.97438 * 6 5 4
8 8 C 1.42898 * 117.00220 * 180.02562 * 7 6 5
9 9 C 1.52999 * 109.46971 * 180.02562 * 8 7 6
10 10 C 1.53004 * 109.46862 * 179.97438 * 9 8 7
11 11 N 1.46900 * 109.47074 * 180.02562 * 10 9 8
12 12 C 1.46904 * 110.99779 * 180.02562 * 11 10 9
13 13 C 1.52996 * 109.46858 * 179.97438 * 12 11 10
14 14 H 1.09000 * 109.47753 * 305.00128 * 13 12 11
15 15 C 1.47204 * 109.47042 * 64.99895 * 13 12 11
16 16 N 9.12049 * 148.14022 * 152.47126 * 6 1 2
17 17 C 1.52996 * 109.47153 * 184.99851 * 13 12 11
18 18 C 1.50702 * 109.47159 * 175.00123 * 17 13 12
19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13
20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13
21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17
22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17
23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18
24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18
25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18
26 26 C 1.38695 * 119.99859 * 0.25682 * 6 5 4
27 27 C 1.38134 * 120.00159 * 359.48821 * 26 6 5
28 28 H 1.08993 * 109.47548 * 299.99802 * 1 2 3
29 29 H 1.09001 * 109.47026 * 59.99982 * 1 2 3
30 30 H 1.09003 * 109.47148 * 179.97438 * 1 2 3
31 31 H 1.08002 * 120.00735 * 0.02562 * 4 3 2
32 32 H 1.08006 * 120.00012 * 179.97438 * 5 4 3
33 33 H 1.08995 * 109.47295 * 60.00210 * 8 7 6
34 34 H 1.08998 * 109.46905 * 300.00319 * 8 7 6
35 35 H 1.08998 * 109.47108 * 60.00465 * 9 8 7
36 36 H 1.08998 * 109.47146 * 299.99657 * 9 8 7
37 37 H 1.09003 * 109.47140 * 59.99982 * 10 9 8
38 38 H 1.09004 * 109.47248 * 300.00133 * 10 9 8
39 39 H 1.00899 * 110.99585 * 303.95295 * 11 10 9
40 40 H 1.08997 * 109.46933 * 59.99775 * 12 11 10
41 41 H 1.08996 * 109.47325 * 299.99917 * 12 11 10
42 42 H 1.09004 * 109.47066 * 55.00326 * 17 13 12
43 43 H 1.08994 * 109.47405 * 295.00156 * 17 13 12
44 44 H 0.97005 * 119.99651 * 179.97438 * 21 20 18
45 45 H 1.07995 * 120.00002 * 179.72637 * 26 6 5
46 46 H 1.07996 * 120.00128 * 180.23589 * 27 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2116 0.0000
4 6 3.4314 1.2841 0.0005
5 6 4.0585 2.5149 0.0011
6 6 3.3031 3.6782 0.0016
7 8 3.9205 4.8898 0.0027
8 6 3.0806 6.0458 0.0037
9 6 3.9478 7.3063 0.0042
10 6 3.0485 8.5441 0.0047
11 7 3.8812 9.7543 0.0045
12 6 3.0497 10.9654 0.0056
13 6 3.9503 12.2022 0.0060
14 1 4.6410 12.1486 0.8474
15 6 4.7127 12.2544 -1.2521
16 7 5.3027 12.2951 -2.2197
17 6 3.0888 13.4603 0.1328
18 6 3.9802 14.6691 0.2567
19 1 5.0538 14.5518 0.2456
20 6 3.4252 15.9254 0.3778
21 7 2.1178 16.0682 0.3909
22 14 4.5301 17.4245 0.5237
23 1 5.3881 17.5264 -0.6841
24 1 3.6939 18.6460 0.6419
25 1 5.3866 17.2929 1.7296
26 6 1.9181 3.6056 0.0070
27 6 1.2909 2.3748 0.0011
28 1 -0.3634 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 4.0197 0.3784 0.0005
32 1 5.1371 2.5714 0.0019
33 1 2.4514 6.0370 0.8937
34 1 2.4512 6.0385 -0.8862
35 1 4.5767 7.3149 -0.8861
36 1 4.5774 7.3138 0.8939
37 1 2.4193 8.5357 0.8947
38 1 2.4192 8.5364 -0.8853
39 1 4.5199 9.7539 0.7856
40 1 2.4211 10.9737 0.8960
41 1 2.4198 10.9745 -0.8839
42 1 2.4586 13.3813 1.0186
43 1 2.4607 13.5613 -0.7522
44 1 1.7274 16.9521 0.4766
45 1 1.3299 4.5113 0.0119
46 1 0.2125 2.3183 0.0015
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000567680655.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:24:44
Heat of formation + Delta-G solvation = -39.698960 kcal
Electronic energy + Delta-G solvation = -24228.748562 eV
Core-core repulsion = 20504.681455 eV
Total energy + Delta-G solvation = -3724.067107 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-40.76059 -39.38339 -37.60586 -36.78394 -35.59137 -33.80482 -32.63955 -31.58412
-30.90123 -29.51498 -27.52554 -26.91359 -25.07674 -23.17224 -22.51374 -22.10301
-21.83208 -21.30472 -18.80961 -18.00090 -17.14092 -16.86653 -16.56323 -16.41138
-16.09621 -15.27821 -15.13566 -15.04234 -14.66161 -14.35466 -14.27150 -13.89574
-13.69047 -13.58836 -13.10512 -12.94519 -12.78626 -12.42464 -12.29501 -12.16563
-11.98715 -11.78536 -11.73610 -11.58203 -11.27498 -11.12953 -11.01875 -11.00836
-10.70011 -10.63880 -10.55746 -10.26066 -9.56632 -9.47090 -9.26114 -8.47658
-8.38444 -8.09332 -6.11215 -4.14493 0.86219 1.10252 2.79482 2.94733
3.30361 3.34637 3.35758 3.38531 3.74271 3.83775 4.17769 4.33111
4.39645 4.41133 4.61774 4.64617 4.70598 4.73805 4.82994 4.88934
4.91897 5.01114 5.06030 5.08946 5.14144 5.22648 5.26977 5.45669
5.47992 5.52787 5.65229 5.70732 5.88491 5.89035 5.92383 5.96671
6.02306 6.19744 6.35002 6.46719 6.90838 7.01209 7.15817 7.38716
7.41977 7.50766 7.83789 8.21209 8.57795 8.90002 9.51078 10.99582
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.035989 B = 0.001502 C = 0.001465
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 777.839535 B =18633.404027 C =19106.418130
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.320 6.320
3 C 0.086 3.914
4 C -0.111 4.111
5 C -0.113 4.113
6 C 0.099 3.901
7 O -0.313 6.313
8 C 0.062 3.938
9 C -0.118 4.118
10 C 0.064 3.936
11 N -0.693 5.693
12 C 0.067 3.933
13 C 0.009 3.991
14 H 0.099 0.901
15 C 0.255 3.745
16 N -0.478 5.478
17 C 0.032 3.968
18 C -0.528 4.528
19 H 0.057 0.943
20 C 0.063 3.937
21 N -0.892 5.892
22 Si 0.892 3.108
23 H -0.276 1.276
24 H -0.286 1.286
25 H -0.275 1.275
26 C -0.170 4.170
27 C -0.167 4.167
28 H 0.054 0.946
29 H 0.054 0.946
30 H 0.099 0.901
31 H 0.137 0.863
32 H 0.139 0.861
33 H 0.061 0.939
34 H 0.063 0.937
35 H 0.083 0.917
36 H 0.074 0.926
37 H 0.033 0.967
38 H 0.074 0.926
39 H 0.343 0.657
40 H 0.050 0.950
41 H 0.077 0.923
42 H 0.037 0.963
43 H 0.026 0.974
44 H 0.263 0.737
45 H 0.132 0.868
46 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.804 -31.282 3.295 31.820
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.234 6.234
3 C 0.041 3.959
4 C -0.130 4.130
5 C -0.132 4.132
6 C 0.054 3.946
7 O -0.227 6.227
8 C -0.014 4.014
9 C -0.156 4.156
10 C -0.066 4.066
11 N -0.324 5.324
12 C -0.063 4.063
13 C -0.013 4.013
14 H 0.117 0.883
15 C -0.062 4.062
16 N -0.155 5.155
17 C -0.007 4.007
18 C -0.566 4.566
19 H 0.075 0.925
20 C -0.139 4.139
21 N -0.530 5.530
22 Si 0.720 3.280
23 H -0.202 1.202
24 H -0.212 1.212
25 H -0.201 1.201
26 C -0.189 4.189
27 C -0.186 4.186
28 H 0.073 0.927
29 H 0.073 0.927
30 H 0.117 0.883
31 H 0.155 0.845
32 H 0.157 0.843
33 H 0.079 0.921
34 H 0.081 0.919
35 H 0.102 0.898
36 H 0.092 0.908
37 H 0.051 0.949
38 H 0.092 0.908
39 H 0.161 0.839
40 H 0.068 0.932
41 H 0.096 0.904
42 H 0.055 0.945
43 H 0.045 0.955
44 H 0.073 0.927
45 H 0.150 0.850
46 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -3.695 -31.217 1.161 31.456
hybrid contribution -0.622 1.180 1.364 1.908
sum -4.317 -30.037 2.525 30.451
Atomic orbital electron populations
1.23038 0.78503 1.03918 1.01300 1.86071 1.21240 1.26712 1.89336
1.18913 0.92341 0.84229 1.00419 1.20241 0.91337 0.97892 1.03518
1.20281 1.00394 0.88997 1.03523 1.18917 0.90951 0.85711 0.98999
1.86080 1.35933 1.11927 1.88800 1.22774 0.93510 0.83706 1.01366
1.21494 0.98689 0.90864 1.04512 1.21767 0.94808 0.89024 1.00960
1.60462 1.20231 1.01290 1.50454 1.22075 0.94790 0.87602 1.01834
1.19217 0.96120 0.97443 0.88536 0.88265 1.28761 0.92613 0.90580
0.94262 1.80900 1.10877 1.11158 1.12545 1.19164 0.94417 0.88474
0.98642 1.21112 0.92979 0.91374 1.51129 0.92525 1.24953 0.94993
0.99083 0.94912 1.69929 1.09749 1.23544 1.49810 0.86643 0.80540
0.82011 0.78818 1.20203 1.21195 1.20053 1.21095 0.93460 0.98502
1.05807 1.21043 1.00052 0.91694 1.05830 0.92719 0.92719 0.88265
0.84488 0.84332 0.92062 0.91907 0.89815 0.90771 0.94865 0.90767
0.83918 0.93170 0.90450 0.94457 0.95548 0.92744 0.85037 0.85224
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.13 9.81 101.05 0.99 1.12 16
2 O -0.32 -2.65 10.50 -19.68 -0.21 -2.85 16
3 C 0.09 0.75 6.69 -39.24 -0.26 0.49 16
4 C -0.11 -0.93 9.98 -39.45 -0.39 -1.33 16
5 C -0.11 -1.00 9.98 -39.45 -0.39 -1.39 16
6 C 0.10 0.97 6.69 -39.24 -0.26 0.71 16
7 O -0.31 -3.24 10.14 -19.68 -0.20 -3.44 16
8 C 0.06 0.52 4.74 37.16 0.18 0.69 16
9 C -0.12 -1.06 5.84 -26.73 -0.16 -1.22 16
10 C 0.06 0.62 5.69 -3.82 -0.02 0.60 16
11 N -0.69 -8.45 6.20 -113.78 -0.71 -9.16 16
12 C 0.07 0.94 5.05 -3.82 -0.02 0.92 16
13 C 0.01 0.16 2.35 -93.41 -0.22 -0.06 16
14 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16
15 C 0.25 5.29 13.66 -20.82 -0.28 5.01 16
16 N -0.48 -10.88 18.52 42.08 0.78 -10.10 16
17 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16
18 C -0.53 -13.95 8.60 -34.44 -0.30 -14.24 16
19 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16
20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16
21 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16
22 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16
23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16
26 C -0.17 -1.45 9.03 -39.45 -0.36 -1.81 16
27 C -0.17 -1.34 9.03 -39.45 -0.36 -1.70 16
28 H 0.05 0.21 7.66 -51.93 -0.40 -0.19 16
29 H 0.05 0.21 7.66 -51.93 -0.40 -0.19 16
30 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16
31 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16
32 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16
33 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16
34 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16
35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16
36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
37 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16
38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
39 H 0.34 3.74 8.73 -39.29 -0.34 3.40 16
40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16
43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16
44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16
45 H 0.13 0.91 6.29 -52.49 -0.33 0.58 16
46 H 0.13 0.75 6.29 -52.49 -0.33 0.42 16
LS Contribution 391.92 15.07 5.91 5.91
Total: -1.00 -32.02 391.92 -7.99 -40.01
By element:
Atomic # 1 Polarization: 5.25 SS G_CDS: -7.20 Total: -1.95 kcal
Atomic # 6 Polarization: -7.92 SS G_CDS: -2.08 Total: -10.00 kcal
Atomic # 7 Polarization: -44.67 SS G_CDS: 0.81 Total: -43.86 kcal
Atomic # 8 Polarization: -5.88 SS G_CDS: -0.41 Total: -6.29 kcal
Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -32.02 -7.99 -40.01 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000567680655.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.311 kcal
(2) G-P(sol) polarization free energy of solvation -32.022 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.711 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.699 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds