Wall clock time and date at job start Tue Mar 31 2020 12:24:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35980 * 116.99894 * 2 1
4 4 C 1.38696 * 119.99633 * 179.97438 * 3 2 1
5 5 C 1.38137 * 119.99818 * 180.02562 * 4 3 2
6 6 C 1.38698 * 119.99997 * 0.02562 * 5 4 3
7 7 O 1.35980 * 120.00154 * 179.97438 * 6 5 4
8 8 C 1.42898 * 117.00220 * 180.02562 * 7 6 5
9 9 C 1.52999 * 109.46971 * 180.02562 * 8 7 6
10 10 C 1.53004 * 109.46862 * 179.97438 * 9 8 7
11 11 N 1.46900 * 109.47074 * 180.02562 * 10 9 8
12 12 C 1.46904 * 110.99779 * 180.02562 * 11 10 9
13 13 C 1.52996 * 109.46858 * 179.97438 * 12 11 10
14 14 H 1.09000 * 109.47753 * 305.00128 * 13 12 11
15 15 C 1.47204 * 109.47042 * 64.99895 * 13 12 11
16 16 N 9.12049 * 148.14022 * 152.47126 * 6 1 2
17 17 C 1.52996 * 109.47153 * 184.99851 * 13 12 11
18 18 C 1.50702 * 109.47159 * 175.00123 * 17 13 12
19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13
20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13
21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17
22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17
23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18
24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18
25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18
26 26 C 1.38695 * 119.99859 * 0.25682 * 6 5 4
27 27 C 1.38134 * 120.00159 * 359.48821 * 26 6 5
28 28 H 1.08993 * 109.47548 * 299.99802 * 1 2 3
29 29 H 1.09001 * 109.47026 * 59.99982 * 1 2 3
30 30 H 1.09003 * 109.47148 * 179.97438 * 1 2 3
31 31 H 1.08002 * 120.00735 * 0.02562 * 4 3 2
32 32 H 1.08006 * 120.00012 * 179.97438 * 5 4 3
33 33 H 1.08995 * 109.47295 * 60.00210 * 8 7 6
34 34 H 1.08998 * 109.46905 * 300.00319 * 8 7 6
35 35 H 1.08998 * 109.47108 * 60.00465 * 9 8 7
36 36 H 1.08998 * 109.47146 * 299.99657 * 9 8 7
37 37 H 1.09003 * 109.47140 * 59.99982 * 10 9 8
38 38 H 1.09004 * 109.47248 * 300.00133 * 10 9 8
39 39 H 1.00899 * 110.99585 * 303.95295 * 11 10 9
40 40 H 1.08997 * 109.46933 * 59.99775 * 12 11 10
41 41 H 1.08996 * 109.47325 * 299.99917 * 12 11 10
42 42 H 1.09004 * 109.47066 * 55.00326 * 17 13 12
43 43 H 1.08994 * 109.47405 * 295.00156 * 17 13 12
44 44 H 0.97005 * 119.99651 * 179.97438 * 21 20 18
45 45 H 1.07995 * 120.00002 * 179.72637 * 26 6 5
46 46 H 1.07996 * 120.00128 * 180.23589 * 27 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2116 0.0000
4 6 3.4314 1.2841 0.0005
5 6 4.0585 2.5149 0.0011
6 6 3.3031 3.6782 0.0016
7 8 3.9205 4.8898 0.0027
8 6 3.0806 6.0458 0.0037
9 6 3.9478 7.3063 0.0042
10 6 3.0485 8.5441 0.0047
11 7 3.8812 9.7543 0.0045
12 6 3.0497 10.9654 0.0056
13 6 3.9503 12.2022 0.0060
14 1 4.6410 12.1486 0.8474
15 6 4.7127 12.2544 -1.2521
16 7 5.3027 12.2951 -2.2197
17 6 3.0888 13.4603 0.1328
18 6 3.9802 14.6691 0.2567
19 1 5.0538 14.5518 0.2456
20 6 3.4252 15.9254 0.3778
21 7 2.1178 16.0682 0.3909
22 14 4.5301 17.4245 0.5237
23 1 5.3881 17.5264 -0.6841
24 1 3.6939 18.6460 0.6419
25 1 5.3866 17.2929 1.7296
26 6 1.9181 3.6056 0.0070
27 6 1.2909 2.3748 0.0011
28 1 -0.3634 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 4.0197 0.3784 0.0005
32 1 5.1371 2.5714 0.0019
33 1 2.4514 6.0370 0.8937
34 1 2.4512 6.0385 -0.8862
35 1 4.5767 7.3149 -0.8861
36 1 4.5774 7.3138 0.8939
37 1 2.4193 8.5357 0.8947
38 1 2.4192 8.5364 -0.8853
39 1 4.5199 9.7539 0.7856
40 1 2.4211 10.9737 0.8960
41 1 2.4198 10.9745 -0.8839
42 1 2.4586 13.3813 1.0186
43 1 2.4607 13.5613 -0.7522
44 1 1.7274 16.9521 0.4766
45 1 1.3299 4.5113 0.0119
46 1 0.2125 2.3183 0.0015
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000567680655.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:24:44
Heat of formation + Delta-G solvation = -59.138889 kcal
Electronic energy + Delta-G solvation = -24229.591541 eV
Core-core repulsion = 20504.681455 eV
Total energy + Delta-G solvation = -3724.910086 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.36587 -39.99468 -38.86402 -37.52387 -36.80721 -35.51643 -34.08702 -32.32736
-32.02995 -30.17670 -28.46578 -27.90766 -26.16596 -24.21676 -23.47624 -23.42374
-22.73376 -22.09216 -19.41320 -18.68677 -18.54241 -18.31111 -17.45709 -17.29799
-16.63953 -16.59234 -16.10887 -15.84838 -15.75883 -15.52805 -15.15424 -14.75305
-14.59997 -14.43420 -14.21366 -14.20196 -13.74056 -13.59959 -13.54633 -13.30626
-13.11015 -12.95143 -12.80695 -12.63079 -12.49351 -12.43355 -12.30407 -12.27832
-11.91330 -11.77486 -11.59627 -11.37972 -11.25008 -11.12407 -10.54048 -10.08126
-9.31346 -8.72528 -8.18777 -6.26788 0.25353 0.46010 1.41755 1.43593
1.50426 2.08835 2.16512 2.17234 2.42298 2.44294 2.73165 3.16622
3.25920 3.39811 3.75885 3.84120 3.95624 4.12473 4.16736 4.18031
4.25162 4.32967 4.40585 4.41016 4.43543 4.51532 4.52270 4.57417
4.74516 4.75943 4.79870 4.84867 4.91114 5.03418 5.05980 5.16701
5.23673 5.29525 5.34554 5.47997 5.59390 5.63666 5.80036 6.03787
6.22673 6.34809 6.52882 6.55638 6.84267 6.94995 7.41748 8.91739
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.035989 B = 0.001502 C = 0.001465
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 777.839535 B =18633.404027 C =19106.418130
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.336 6.336
3 C 0.075 3.925
4 C -0.120 4.120
5 C -0.123 4.123
6 C 0.079 3.921
7 O -0.331 6.331
8 C 0.062 3.938
9 C -0.109 4.109
10 C 0.067 3.933
11 N -0.705 5.705
12 C 0.079 3.921
13 C 0.018 3.982
14 H 0.121 0.879
15 C 0.266 3.734
16 N -0.517 5.517
17 C 0.037 3.963
18 C -0.541 4.541
19 H 0.054 0.946
20 C 0.012 3.988
21 N -0.923 5.923
22 Si 0.948 3.052
23 H -0.282 1.282
24 H -0.282 1.282
25 H -0.263 1.263
26 C -0.174 4.174
27 C -0.170 4.170
28 H 0.063 0.937
29 H 0.062 0.938
30 H 0.117 0.883
31 H 0.149 0.851
32 H 0.146 0.854
33 H 0.076 0.924
34 H 0.069 0.931
35 H 0.065 0.935
36 H 0.076 0.924
37 H 0.052 0.948
38 H 0.072 0.928
39 H 0.351 0.649
40 H 0.071 0.929
41 H 0.070 0.930
42 H 0.037 0.963
43 H 0.000 1.000
44 H 0.264 0.736
45 H 0.147 0.853
46 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.282 -32.247 4.305 32.959
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.251 6.251
3 C 0.030 3.970
4 C -0.139 4.139
5 C -0.141 4.141
6 C 0.034 3.966
7 O -0.246 6.246
8 C -0.013 4.013
9 C -0.147 4.147
10 C -0.061 4.061
11 N -0.338 5.338
12 C -0.051 4.051
13 C -0.003 4.003
14 H 0.139 0.861
15 C -0.050 4.050
16 N -0.195 5.195
17 C -0.002 4.002
18 C -0.579 4.579
19 H 0.072 0.928
20 C -0.187 4.187
21 N -0.562 5.562
22 Si 0.773 3.227
23 H -0.208 1.208
24 H -0.208 1.208
25 H -0.187 1.187
26 C -0.192 4.192
27 C -0.189 4.189
28 H 0.082 0.918
29 H 0.081 0.919
30 H 0.135 0.865
31 H 0.167 0.833
32 H 0.164 0.836
33 H 0.094 0.906
34 H 0.087 0.913
35 H 0.084 0.916
36 H 0.095 0.905
37 H 0.070 0.930
38 H 0.091 0.909
39 H 0.171 0.829
40 H 0.089 0.911
41 H 0.088 0.912
42 H 0.056 0.944
43 H 0.019 0.981
44 H 0.073 0.927
45 H 0.165 0.835
46 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -4.169 -32.200 2.182 32.542
hybrid contribution -0.505 1.408 1.042 1.823
sum -4.674 -30.791 3.224 31.311
Atomic orbital electron populations
1.23306 0.76734 1.05463 1.02090 1.86050 1.23174 1.26594 1.89280
1.19132 0.92695 0.84795 1.00359 1.20452 0.91731 0.98244 1.03429
1.20464 1.00945 0.89113 1.03597 1.19141 0.91688 0.85655 1.00089
1.86039 1.36883 1.12522 1.89141 1.22818 0.93293 0.82802 1.02420
1.21370 0.98498 0.91097 1.03750 1.21767 0.94680 0.87925 1.01777
1.60374 1.20693 1.01396 1.51309 1.21859 0.94015 0.86682 1.02506
1.19214 0.96071 0.97184 0.87875 0.86133 1.29328 0.91888 0.89439
0.94373 1.80900 1.12326 1.12398 1.13827 1.18993 0.94207 0.89668
0.97286 1.21551 0.93385 0.92827 1.50149 0.92795 1.25700 0.96155
1.01840 0.95007 1.70023 1.11076 1.24086 1.51049 0.85764 0.78980
0.79109 0.78806 1.20817 1.20764 1.18723 1.21308 0.93178 0.99370
1.05380 1.21297 1.01169 0.91241 1.05190 0.91840 0.91939 0.86491
0.83318 0.83632 0.90550 0.91251 0.91590 0.90524 0.92975 0.90910
0.82944 0.91129 0.91196 0.94436 0.98137 0.92747 0.83542 0.83170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.14 9.81 113.37 1.11 1.25 16
2 O -0.34 -5.21 10.50 -93.33 -0.98 -6.19 16
3 C 0.08 1.25 6.69 22.49 0.15 1.40 16
4 C -0.12 -1.96 9.98 22.36 0.22 -1.74 16
5 C -0.12 -2.13 9.98 22.36 0.22 -1.91 16
6 C 0.08 1.49 6.69 22.49 0.15 1.64 16
7 O -0.33 -6.60 10.14 -93.33 -0.95 -7.55 16
8 C 0.06 0.93 4.74 71.98 0.34 1.27 16
9 C -0.11 -1.80 5.84 30.60 0.18 -1.62 16
10 C 0.07 1.15 5.69 86.30 0.49 1.64 16
11 N -0.71 -15.73 6.20 -513.88 -3.19 -18.92 16
12 C 0.08 2.07 5.05 86.30 0.44 2.51 16
13 C 0.02 0.63 2.35 -12.60 -0.03 0.60 16
14 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16
15 C 0.27 10.86 13.66 89.47 1.22 12.09 16
16 N -0.52 -23.44 18.52 19.98 0.37 -23.07 16
17 C 0.04 1.68 4.42 29.85 0.13 1.81 16
18 C -0.54 -28.34 8.60 25.60 0.22 -28.12 16
19 H 0.05 2.79 7.59 -2.91 -0.02 2.77 16
20 C 0.01 0.65 5.46 84.66 0.46 1.12 16
21 N -0.92 -52.46 13.29 21.45 0.28 -52.18 16
22 Si 0.95 43.14 29.54 68.60 2.03 45.17 16
23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16
24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
25 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16
26 C -0.17 -2.73 9.03 22.35 0.20 -2.53 16
27 C -0.17 -2.48 9.03 22.35 0.20 -2.28 16
28 H 0.06 0.36 7.66 -2.39 -0.02 0.34 16
29 H 0.06 0.37 7.66 -2.39 -0.02 0.35 16
30 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16
31 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16
32 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16
33 H 0.08 0.91 7.65 -2.39 -0.02 0.89 16
34 H 0.07 0.94 7.67 -2.39 -0.02 0.92 16
35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16
37 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16
38 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16
39 H 0.35 6.81 8.73 -89.69 -0.78 6.02 16
40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16
41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16
42 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16
43 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16
44 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16
45 H 0.15 1.73 6.29 -2.91 -0.02 1.72 16
46 H 0.15 1.43 6.29 -2.91 -0.02 1.41 16
Total: -1.00 -68.25 391.92 3.48 -64.77
By element:
Atomic # 1 Polarization: 10.66 SS G_CDS: 0.19 Total: 10.86 kcal
Atomic # 6 Polarization: -18.60 SS G_CDS: 5.72 Total: -12.88 kcal
Atomic # 7 Polarization: -91.64 SS G_CDS: -2.53 Total: -94.17 kcal
Atomic # 8 Polarization: -11.82 SS G_CDS: -1.93 Total: -13.74 kcal
Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal
Total: -68.25 3.48 -64.77 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000567680655.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.629 kcal
(2) G-P(sol) polarization free energy of solvation -68.246 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.617 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.768 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.139 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds