Wall clock time and date at job start Tue Mar 31 2020 12:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 120.00483 * 2 1 4 4 O 1.21555 * 119.99649 * 359.97438 * 3 2 1 5 5 C 1.47846 * 120.00294 * 180.02562 * 3 2 1 6 6 C 1.39595 * 120.14200 * 359.97195 * 5 3 2 7 7 C 1.37933 * 119.84959 * 180.02562 * 6 5 3 8 8 C 1.38385 * 120.14599 * 359.72105 * 7 6 5 9 9 C 1.38328 * 120.29114 * 0.55142 * 8 7 6 10 10 C 1.50706 * 119.92918 * 179.72050 * 9 8 7 11 11 N 1.46497 * 109.47174 * 269.73151 * 10 9 8 12 12 C 1.34777 * 119.99525 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99675 * 179.72583 * 12 11 10 15 15 C 1.53004 * 109.47208 * 180.27843 * 14 12 11 16 16 C 1.52997 * 109.47000 * 179.97438 * 15 14 12 17 17 C 1.53011 * 109.46712 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.46921 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99765 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00083 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46986 * 89.99874 * 22 20 18 24 24 H 1.48499 * 109.47352 * 210.00027 * 22 20 18 25 25 H 1.48501 * 109.46810 * 330.00489 * 22 20 18 26 26 C 1.37982 * 120.14559 * 359.45378 * 9 8 7 27 27 H 1.09001 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47206 * 300.00911 * 1 2 3 29 29 H 1.09005 * 109.46734 * 60.00284 * 1 2 3 30 30 H 0.97001 * 119.99612 * 179.97438 * 2 1 3 31 31 H 1.07998 * 120.07366 * 0.02562 * 6 5 3 32 32 H 1.08002 * 119.92633 * 179.97438 * 7 6 5 33 33 H 1.08003 * 119.84860 * 180.29970 * 8 7 6 34 34 H 1.08995 * 109.46956 * 149.72855 * 10 9 8 35 35 H 1.09001 * 109.46317 * 29.73302 * 10 9 8 36 36 H 0.97000 * 120.00580 * 0.02562 * 11 10 9 37 37 H 1.09009 * 109.47352 * 300.27556 * 14 12 11 38 38 H 1.08998 * 109.47585 * 60.27844 * 14 12 11 39 39 H 1.09000 * 109.46887 * 300.00372 * 15 14 12 40 40 H 1.08998 * 109.46846 * 59.99549 * 15 14 12 41 41 H 1.08995 * 109.47672 * 299.99669 * 16 15 14 42 42 H 1.09001 * 109.47109 * 60.00906 * 16 15 14 43 43 H 1.09003 * 109.46627 * 299.99937 * 17 16 15 44 44 H 1.08992 * 109.47177 * 60.00618 * 17 16 15 45 45 H 0.96999 * 120.00235 * 180.02562 * 21 20 18 46 46 H 1.07998 * 120.07136 * 180.24608 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5312 2.2198 -0.0005 5 6 3.6174 1.1671 -0.0006 6 6 4.3184 -0.0401 -0.0005 7 6 5.6977 -0.0331 -0.0005 8 6 6.3866 1.1670 -0.0064 9 6 5.6981 2.3668 -0.0008 10 6 6.4566 3.6690 -0.0009 11 7 6.7024 4.0911 1.3802 12 6 7.3698 5.2359 1.6263 13 8 7.7664 5.9168 0.7044 14 6 7.6173 5.6732 3.0471 15 6 8.3831 6.9978 3.0469 16 6 8.6338 7.4421 4.4893 17 6 9.4001 8.7665 4.4891 18 6 9.6476 9.2038 5.9099 19 1 9.2941 8.5976 6.7308 20 6 10.3262 10.3772 6.1617 21 7 10.7580 11.1147 5.1620 22 14 10.6325 10.9197 7.9227 23 1 11.9251 10.3617 8.3949 24 1 10.6823 12.4027 7.9824 25 1 9.5335 10.4260 8.7909 26 6 4.3183 2.3739 -0.0007 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.9500 -0.8401 0.0004 31 1 3.7819 -0.9774 -0.0005 32 1 6.2412 -0.9664 -0.0001 33 1 7.4666 1.1669 -0.0113 34 1 5.8704 4.4308 -0.5148 35 1 7.4084 3.5349 -0.5148 36 1 6.3856 3.5463 2.1176 37 1 6.6635 5.8050 3.5581 38 1 8.2046 4.9142 3.5639 39 1 9.3368 6.8661 2.5358 40 1 7.7958 7.7568 2.5301 41 1 7.6799 7.5740 5.0000 42 1 9.2210 6.6832 5.0064 43 1 10.3541 8.6341 3.9786 44 1 8.8134 9.5256 3.9720 45 1 11.2358 11.9400 5.3391 46 1 3.7819 3.3112 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588149584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:44 Heat of formation + Delta-G solvation = -74.176134 kcal Electronic energy + Delta-G solvation = -24487.570972 eV Core-core repulsion = 20762.008822 eV Total energy + Delta-G solvation = -3725.562150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.78354 -39.73246 -38.82411 -35.42767 -35.11646 -34.70581 -32.63077 -32.02325 -31.66142 -29.72048 -27.65836 -26.72488 -25.15241 -23.85931 -22.55616 -22.03645 -20.78244 -20.27827 -19.92751 -18.56132 -16.81674 -16.78601 -16.57364 -16.24404 -15.94058 -15.82613 -15.70563 -15.26318 -14.91860 -14.41687 -14.25915 -14.07663 -13.73262 -13.65140 -13.32861 -12.93073 -12.86481 -12.77136 -12.56901 -12.18765 -11.99433 -11.68067 -11.62408 -11.52376 -10.95392 -10.50322 -10.49091 -10.47461 -10.37201 -9.96719 -9.75577 -9.57514 -9.48088 -9.40968 -9.18906 -9.15771 -8.94029 -8.27458 -5.92224 -3.94686 0.28094 0.71930 2.31410 2.62476 2.74971 3.09800 3.36131 3.42072 3.45380 3.48731 4.06696 4.11203 4.29780 4.48418 4.51576 4.64896 4.73684 4.80965 4.91844 4.98310 5.08667 5.24191 5.28649 5.36579 5.40975 5.43063 5.44772 5.50644 5.70280 5.76864 5.80035 5.90705 5.99672 6.18317 6.25377 6.30171 6.35107 6.59052 6.88380 6.88754 7.06333 7.23909 7.43738 7.66958 7.77529 7.93933 8.09429 8.27484 8.51249 9.13057 9.68827 11.19063 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022323 B = 0.001662 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.998678 B =16842.134142 C =17412.248447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.557 3.443 4 O -0.531 6.531 5 C -0.139 4.139 6 C -0.081 4.081 7 C -0.127 4.127 8 C -0.073 4.073 9 C -0.111 4.111 10 C 0.159 3.841 11 N -0.736 5.736 12 C 0.512 3.488 13 O -0.534 6.534 14 C -0.138 4.138 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.520 4.520 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.040 4.040 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.401 0.599 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.401 0.599 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.151 -31.620 -12.799 38.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.385 5.385 3 C 0.344 3.656 4 O -0.408 6.408 5 C -0.142 4.142 6 C -0.100 4.100 7 C -0.145 4.145 8 C -0.091 4.091 9 C -0.112 4.112 10 C 0.036 3.964 11 N -0.390 5.390 12 C 0.300 3.700 13 O -0.410 6.410 14 C -0.178 4.178 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.559 4.559 19 H 0.072 0.928 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.059 4.059 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.236 0.764 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.235 0.765 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.242 -30.173 -13.525 37.291 hybrid contribution 0.215 -0.508 1.268 1.383 sum -17.027 -30.681 -12.257 37.168 Atomic orbital electron populations 1.21583 0.78972 1.02445 1.02708 1.45703 1.08040 1.08555 1.76225 1.18328 0.87274 0.83797 0.76154 1.90814 1.69883 1.31096 1.49012 1.19879 0.92625 0.94486 1.07254 1.21312 0.94741 0.96744 0.97227 1.21124 0.93874 0.98483 1.01049 1.21391 1.00641 0.91661 0.95453 1.19928 0.93448 0.95202 1.02589 1.20156 0.99552 0.92090 0.84594 1.46158 1.59628 1.25327 1.07848 1.21136 0.76556 0.79711 0.92582 1.90715 1.50169 1.53405 1.46694 1.21798 1.03020 1.00868 0.92125 1.21454 0.99850 0.93681 0.99158 1.21652 1.00073 1.00023 0.93066 1.19103 0.95125 0.90785 0.96771 1.21292 1.35598 1.06313 0.92665 0.92760 1.25039 0.95903 0.96711 0.96912 1.69976 1.38566 1.14349 1.30553 0.86612 0.78522 0.77705 0.85243 1.20734 1.21264 1.19944 1.21256 0.93163 0.98056 0.93416 0.90434 0.91912 0.91953 0.76407 0.85613 0.84980 0.85020 0.90392 0.90372 0.76527 0.89087 0.89139 0.91801 0.91782 0.93467 0.93498 0.96583 0.96556 0.93073 0.84277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.37 10.70 59.85 0.64 1.02 16 2 N -0.73 -3.84 5.66 -68.04 -0.39 -4.22 16 3 C 0.56 4.95 7.77 -12.33 -0.10 4.85 16 4 O -0.53 -6.93 16.35 5.32 0.09 -6.84 16 5 C -0.14 -1.05 5.87 -104.97 -0.62 -1.66 16 6 C -0.08 -0.39 9.54 -39.19 -0.37 -0.76 16 7 C -0.13 -0.58 10.03 -39.64 -0.40 -0.98 16 8 C -0.07 -0.42 9.69 -39.49 -0.38 -0.81 16 9 C -0.11 -0.83 5.24 -104.68 -0.55 -1.38 16 10 C 0.16 1.47 5.80 -5.19 -0.03 1.44 16 11 N -0.74 -7.38 5.55 -61.47 -0.34 -7.72 16 12 C 0.51 7.15 7.83 -10.98 -0.09 7.06 16 13 O -0.53 -9.77 15.98 5.55 0.09 -9.68 16 14 C -0.14 -1.86 5.70 -27.88 -0.16 -2.02 16 15 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 16 C -0.11 -2.32 5.15 -26.73 -0.14 -2.45 16 17 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 18 C -0.52 -15.19 9.11 -34.44 -0.31 -15.51 16 19 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -27.77 13.29 55.43 0.74 -27.04 16 22 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 26 C -0.04 -0.33 9.24 -39.19 -0.36 -0.70 16 27 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.40 0.83 6.86 -40.82 -0.28 0.55 16 31 H 0.13 0.21 6.41 -52.49 -0.34 -0.13 16 32 H 0.13 0.30 8.06 -52.49 -0.42 -0.12 16 33 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 34 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 36 H 0.40 3.06 8.46 -40.82 -0.35 2.72 16 37 H 0.09 1.08 8.14 -51.92 -0.42 0.65 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.14 1.33 7.65 -52.49 -0.40 0.93 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -37.73 391.50 -9.39 -47.12 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -7.24 Total: -2.63 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -3.22 Total: -11.98 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.01 Total: -38.98 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.18 Total: -16.52 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.73 -9.39 -47.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588149584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.060 kcal (2) G-P(sol) polarization free energy of solvation -37.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds