Wall clock time and date at job start Tue Mar 31 2020 12:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 120.00483 * 2 1 4 4 O 1.21555 * 119.99649 * 359.97438 * 3 2 1 5 5 C 1.47846 * 120.00294 * 180.02562 * 3 2 1 6 6 C 1.39595 * 120.14200 * 359.97195 * 5 3 2 7 7 C 1.37933 * 119.84959 * 180.02562 * 6 5 3 8 8 C 1.38385 * 120.14599 * 359.72105 * 7 6 5 9 9 C 1.38328 * 120.29114 * 0.55142 * 8 7 6 10 10 C 1.50706 * 119.92918 * 179.72050 * 9 8 7 11 11 N 1.46497 * 109.47174 * 269.73151 * 10 9 8 12 12 C 1.34777 * 119.99525 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99675 * 179.72583 * 12 11 10 15 15 C 1.53004 * 109.47208 * 180.27843 * 14 12 11 16 16 C 1.52997 * 109.47000 * 179.97438 * 15 14 12 17 17 C 1.53011 * 109.46712 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.46921 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99765 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00083 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46986 * 89.99874 * 22 20 18 24 24 H 1.48499 * 109.47352 * 210.00027 * 22 20 18 25 25 H 1.48501 * 109.46810 * 330.00489 * 22 20 18 26 26 C 1.37982 * 120.14559 * 359.45378 * 9 8 7 27 27 H 1.09001 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47206 * 300.00911 * 1 2 3 29 29 H 1.09005 * 109.46734 * 60.00284 * 1 2 3 30 30 H 0.97001 * 119.99612 * 179.97438 * 2 1 3 31 31 H 1.07998 * 120.07366 * 0.02562 * 6 5 3 32 32 H 1.08002 * 119.92633 * 179.97438 * 7 6 5 33 33 H 1.08003 * 119.84860 * 180.29970 * 8 7 6 34 34 H 1.08995 * 109.46956 * 149.72855 * 10 9 8 35 35 H 1.09001 * 109.46317 * 29.73302 * 10 9 8 36 36 H 0.97000 * 120.00580 * 0.02562 * 11 10 9 37 37 H 1.09009 * 109.47352 * 300.27556 * 14 12 11 38 38 H 1.08998 * 109.47585 * 60.27844 * 14 12 11 39 39 H 1.09000 * 109.46887 * 300.00372 * 15 14 12 40 40 H 1.08998 * 109.46846 * 59.99549 * 15 14 12 41 41 H 1.08995 * 109.47672 * 299.99669 * 16 15 14 42 42 H 1.09001 * 109.47109 * 60.00906 * 16 15 14 43 43 H 1.09003 * 109.46627 * 299.99937 * 17 16 15 44 44 H 1.08992 * 109.47177 * 60.00618 * 17 16 15 45 45 H 0.96999 * 120.00235 * 180.02562 * 21 20 18 46 46 H 1.07998 * 120.07136 * 180.24608 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5312 2.2198 -0.0005 5 6 3.6174 1.1671 -0.0006 6 6 4.3184 -0.0401 -0.0005 7 6 5.6977 -0.0331 -0.0005 8 6 6.3866 1.1670 -0.0064 9 6 5.6981 2.3668 -0.0008 10 6 6.4566 3.6690 -0.0009 11 7 6.7024 4.0911 1.3802 12 6 7.3698 5.2359 1.6263 13 8 7.7664 5.9168 0.7044 14 6 7.6173 5.6732 3.0471 15 6 8.3831 6.9978 3.0469 16 6 8.6338 7.4421 4.4893 17 6 9.4001 8.7665 4.4891 18 6 9.6476 9.2038 5.9099 19 1 9.2941 8.5976 6.7308 20 6 10.3262 10.3772 6.1617 21 7 10.7580 11.1147 5.1620 22 14 10.6325 10.9197 7.9227 23 1 11.9251 10.3617 8.3949 24 1 10.6823 12.4027 7.9824 25 1 9.5335 10.4260 8.7909 26 6 4.3183 2.3739 -0.0007 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.9500 -0.8401 0.0004 31 1 3.7819 -0.9774 -0.0005 32 1 6.2412 -0.9664 -0.0001 33 1 7.4666 1.1669 -0.0113 34 1 5.8704 4.4308 -0.5148 35 1 7.4084 3.5349 -0.5148 36 1 6.3856 3.5463 2.1176 37 1 6.6635 5.8050 3.5581 38 1 8.2046 4.9142 3.5639 39 1 9.3368 6.8661 2.5358 40 1 7.7958 7.7568 2.5301 41 1 7.6799 7.5740 5.0000 42 1 9.2210 6.6832 5.0064 43 1 10.3541 8.6341 3.9786 44 1 8.8134 9.5256 3.9720 45 1 11.2358 11.9400 5.3391 46 1 3.7819 3.3112 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588149584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:44 Heat of formation + Delta-G solvation = -100.988519 kcal Electronic energy + Delta-G solvation = -24488.733644 eV Core-core repulsion = 20762.008822 eV Total energy + Delta-G solvation = -3726.724822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.38912 -40.75187 -39.49051 -36.72298 -36.07103 -35.69629 -34.60395 -32.79004 -32.19770 -31.35253 -28.36185 -27.74378 -26.56864 -24.42145 -24.01201 -22.79695 -21.80055 -21.44900 -21.20746 -19.13543 -18.41564 -17.82235 -17.38975 -17.11914 -16.94761 -16.86018 -16.47911 -16.31610 -16.06942 -15.47522 -15.41434 -14.78973 -14.73704 -14.54115 -14.16272 -14.07285 -13.90835 -13.58840 -13.42080 -13.39246 -13.23749 -13.12489 -12.80764 -12.67236 -12.34108 -12.15091 -12.12632 -12.10982 -11.37131 -11.35841 -11.19064 -11.16930 -10.87052 -10.54420 -10.32826 -10.15744 -9.95319 -9.89289 -8.18073 -6.30421 -0.22317 0.22206 1.40492 1.43001 1.54071 1.64437 1.72568 2.15328 2.28266 2.42616 2.86964 3.14489 3.51988 3.64331 3.85848 3.86793 4.06090 4.09231 4.15489 4.22364 4.25291 4.41345 4.57039 4.59320 4.61631 4.69788 4.72882 4.81335 4.85471 4.89340 4.93671 4.95660 5.20293 5.23599 5.31804 5.33216 5.33984 5.36209 5.42448 5.47626 5.57905 5.78884 5.83556 5.88655 6.25919 6.45551 6.53099 6.87963 7.13355 7.25252 7.39181 8.94101 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022323 B = 0.001662 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.998678 B =16842.134142 C =17412.248447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.715 5.715 3 C 0.549 3.451 4 O -0.587 6.587 5 C -0.154 4.154 6 C -0.067 4.067 7 C -0.120 4.120 8 C -0.070 4.070 9 C -0.116 4.116 10 C 0.161 3.839 11 N -0.715 5.715 12 C 0.512 3.488 13 O -0.587 6.587 14 C -0.128 4.128 15 C -0.096 4.096 16 C -0.096 4.096 17 C 0.018 3.982 18 C -0.543 4.543 19 H 0.066 0.934 20 C -0.007 4.007 21 N -0.937 5.937 22 Si 0.970 3.030 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.260 1.260 26 C -0.058 4.058 27 H 0.117 0.883 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.419 0.581 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.147 0.853 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.416 0.584 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.059 0.941 42 H 0.062 0.938 43 H -0.014 1.014 44 H -0.016 1.016 45 H 0.263 0.737 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.429 -35.742 -11.082 41.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.368 5.368 3 C 0.338 3.662 4 O -0.468 6.468 5 C -0.157 4.157 6 C -0.085 4.085 7 C -0.137 4.137 8 C -0.089 4.089 9 C -0.116 4.116 10 C 0.037 3.963 11 N -0.368 5.368 12 C 0.300 3.700 13 O -0.467 6.467 14 C -0.168 4.168 15 C -0.135 4.135 16 C -0.134 4.134 17 C -0.020 4.020 18 C -0.581 4.581 19 H 0.084 0.916 20 C -0.204 4.204 21 N -0.578 5.578 22 Si 0.794 3.206 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.184 1.184 26 C -0.077 4.077 27 H 0.135 0.865 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.257 0.743 31 H 0.180 0.820 32 H 0.184 0.816 33 H 0.165 0.835 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.253 0.747 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.004 0.996 44 H 0.002 0.998 45 H 0.071 0.929 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.551 -34.406 -11.790 40.383 hybrid contribution 0.274 0.689 0.663 0.995 sum -17.276 -33.716 -11.127 39.485 Atomic orbital electron populations 1.21725 0.78347 1.04610 1.01488 1.45628 1.08545 1.08313 1.74282 1.18683 0.88017 0.83950 0.75556 1.90783 1.70973 1.33162 1.51931 1.19877 0.91956 0.95279 1.08587 1.21691 0.95110 0.96860 0.94857 1.21518 0.93802 0.99175 0.99233 1.21625 1.01497 0.91356 0.94389 1.19667 0.92745 0.94946 1.04267 1.20133 0.99538 0.92814 0.83767 1.45975 1.57809 1.24084 1.08958 1.21206 0.76386 0.80167 0.92210 1.90703 1.52696 1.55235 1.48075 1.21676 1.03939 0.98710 0.92427 1.21251 0.99433 0.95979 0.96795 1.21453 0.99816 0.97008 0.95076 1.19069 0.94033 0.93336 0.95513 1.21765 1.35749 1.06883 0.93702 0.91573 1.26094 0.95434 0.96766 1.02085 1.70135 1.39339 1.14897 1.33396 0.85373 0.79017 0.77169 0.79015 1.19605 1.20950 1.18407 1.21130 0.93675 0.97823 0.95095 0.86496 0.93223 0.93204 0.74265 0.81974 0.81604 0.83523 0.92247 0.90316 0.74738 0.86663 0.86042 0.93622 0.94061 0.92242 0.91895 0.99576 0.99788 0.92873 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.70 127.77 1.37 1.97 16 2 N -0.72 -6.25 5.66 -487.46 -2.76 -9.01 16 3 C 0.55 9.71 7.77 86.79 0.67 10.38 16 4 O -0.59 -16.36 16.35 -3.89 -0.06 -16.42 16 5 C -0.15 -2.16 5.87 -20.09 -0.12 -2.28 16 6 C -0.07 -0.40 9.54 22.53 0.21 -0.18 16 7 C -0.12 -0.59 10.03 22.23 0.22 -0.37 16 8 C -0.07 -0.62 9.69 22.33 0.22 -0.41 16 9 C -0.12 -1.65 5.24 -19.90 -0.10 -1.76 16 10 C 0.16 3.02 5.80 85.64 0.50 3.51 16 11 N -0.72 -13.85 5.55 -466.79 -2.59 -16.44 16 12 C 0.51 14.21 7.83 87.66 0.69 14.90 16 13 O -0.59 -22.36 15.98 -3.04 -0.05 -22.40 16 14 C -0.13 -3.25 5.70 29.85 0.17 -3.08 16 15 C -0.10 -3.57 4.50 30.59 0.14 -3.44 16 16 C -0.10 -4.01 5.15 30.60 0.16 -3.85 16 17 C 0.02 0.99 4.97 29.85 0.15 1.13 16 18 C -0.54 -31.98 9.11 25.60 0.23 -31.75 16 19 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 20 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 21 N -0.94 -59.65 13.29 21.45 0.28 -59.36 16 22 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 25 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 26 C -0.06 -1.00 9.24 22.53 0.21 -0.79 16 27 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.42 0.32 6.86 -92.71 -0.64 -0.32 16 31 H 0.16 -0.30 6.41 -2.91 -0.02 -0.32 16 32 H 0.17 -0.21 8.06 -2.91 -0.02 -0.23 16 33 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 34 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 35 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 36 H 0.42 5.59 8.46 -92.71 -0.78 4.81 16 37 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 38 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 40 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 41 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 43 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 44 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 45 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 46 H 0.11 2.49 7.65 -2.91 -0.02 2.46 16 Total: -1.00 -87.79 391.50 1.59 -86.20 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -0.43 Total: 6.02 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 5.17 Total: -15.94 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -5.07 Total: -84.82 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.11 Total: -38.82 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -87.79 1.59 -86.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588149584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.784 kcal (2) G-P(sol) polarization free energy of solvation -87.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds