Wall clock time and date at job start Tue Mar 31 2020 11:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46492 * 120.00330 * 2 1 4 4 C 1.34783 * 119.99922 * 180.02562 * 2 1 3 5 5 O 1.21290 * 119.99822 * 354.48747 * 4 2 1 6 6 C 1.50697 * 120.00467 * 174.48489 * 4 2 1 7 7 H 1.09002 * 109.46655 * 318.13061 * 6 4 2 8 8 C 1.50697 * 109.46752 * 78.12222 * 6 4 2 9 9 C 1.38241 * 120.00143 * 216.23543 * 8 6 4 10 10 C 1.38231 * 119.99915 * 179.77027 * 9 8 6 11 11 C 1.38236 * 120.00449 * 0.48453 * 10 9 8 12 12 C 1.38241 * 119.99545 * 359.79576 * 11 10 9 13 13 C 1.38235 * 120.00146 * 359.95121 * 12 11 10 14 14 N 1.46896 * 109.47541 * 198.12487 * 6 4 2 15 15 C 1.47439 * 110.99845 * 301.66781 * 14 6 4 16 16 C 1.54324 * 107.23412 * 123.25733 * 15 14 6 17 17 C 1.55133 * 103.01753 * 22.27992 * 16 15 14 18 18 O 1.42905 * 110.99172 * 82.44314 * 17 16 15 19 19 C 1.50698 * 110.99342 * 206.25509 * 17 16 15 20 20 H 1.07998 * 120.00204 * 118.54271 * 19 17 16 21 21 C 1.37878 * 119.99993 * 298.54964 * 19 17 16 22 22 N 1.31517 * 120.00186 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 120.00378 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46812 * 59.99722 * 23 21 19 25 25 H 1.48494 * 109.47446 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46865 * 300.00129 * 23 21 19 27 27 C 1.47848 * 110.99705 * 62.50739 * 14 6 4 28 28 H 1.09005 * 109.46760 * 269.99768 * 1 2 3 29 29 H 1.08997 * 109.47318 * 29.99531 * 1 2 3 30 30 H 1.08998 * 109.47361 * 150.00384 * 1 2 3 31 31 H 1.09000 * 109.47367 * 273.61220 * 3 2 1 32 32 H 1.09005 * 109.47107 * 33.61438 * 3 2 1 33 33 H 1.09002 * 109.47441 * 153.61319 * 3 2 1 34 34 H 1.08002 * 119.99803 * 0.02562 * 9 8 6 35 35 H 1.08004 * 119.99963 * 180.25926 * 10 9 8 36 36 H 1.07993 * 120.00511 * 179.76486 * 11 10 9 37 37 H 1.07995 * 119.99557 * 179.97438 * 12 11 10 38 38 H 1.07993 * 120.00209 * 180.02562 * 13 12 11 39 39 H 1.09007 * 109.88846 * 242.66159 * 15 14 6 40 40 H 1.09000 * 109.89050 * 3.68658 * 15 14 6 41 41 H 1.09006 * 110.70584 * 140.66264 * 16 15 14 42 42 H 1.08994 * 110.70362 * 263.72547 * 16 15 14 43 43 H 0.96696 * 114.00348 * 61.44448 * 18 17 16 44 44 H 0.96999 * 120.00522 * 180.02562 * 22 21 19 45 45 H 1.09001 * 110.37285 * 332.46696 * 27 14 6 46 46 H 1.09006 * 110.37217 * 94.80827 * 27 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5366 -2.2153 0.0999 6 6 3.6406 -1.1704 -0.1259 7 1 3.9441 -0.4393 -0.8754 8 6 4.2563 -0.8131 1.2023 9 6 5.4064 -0.0475 1.2475 10 6 5.9684 0.2842 2.4661 11 6 5.3861 -0.1581 3.6392 12 6 4.2392 -0.9286 3.5938 13 6 3.6742 -1.2559 2.3754 14 7 4.0953 -2.5066 -0.5329 15 6 3.6675 -3.5291 0.4394 16 6 2.8473 -4.5819 -0.3354 17 6 3.3348 -4.3985 -1.7967 18 8 4.5571 -5.1040 -2.0211 19 6 2.2760 -4.8321 -2.7775 20 1 1.8612 -4.1192 -3.4747 21 6 1.8367 -6.1390 -2.7847 22 7 2.3420 -7.0073 -1.9360 23 14 0.5237 -6.6765 -4.0000 24 1 1.0105 -6.4539 -5.3851 25 1 0.2284 -8.1185 -3.8042 26 1 -0.7120 -5.8838 -3.7762 27 6 3.5580 -2.8670 -1.8623 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 2.3232 1.6157 -1.0256 32 1 1.6380 2.0112 0.5689 33 1 3.1765 1.1230 0.4567 34 1 5.8635 0.2950 0.3309 35 1 6.8647 0.8859 2.5015 36 1 5.8273 0.0979 4.5911 37 1 3.7845 -1.2744 4.5103 38 1 2.7780 -1.8574 2.3400 39 1 4.5408 -3.9989 0.8919 40 1 3.0509 -3.0707 1.2125 41 1 3.0730 -5.5864 0.0229 42 1 1.7802 -4.3757 -0.2536 43 1 4.4881 -6.0603 -1.8952 44 1 2.0333 -7.9269 -1.9413 45 1 2.6136 -2.3532 -2.0418 46 1 4.2788 -2.6215 -2.6422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:47 Heat of formation + Delta-G solvation = -25.361368 kcal Electronic energy + Delta-G solvation = -28714.730470 eV Core-core repulsion = 24991.285087 eV Total energy + Delta-G solvation = -3723.445383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.84702 -38.66011 -37.62770 -35.37954 -34.61539 -32.07077 -31.96941 -30.92666 -29.23980 -28.22293 -27.87908 -26.56778 -25.15213 -23.90925 -22.64249 -21.63999 -20.26635 -19.43182 -18.86050 -17.24283 -16.81521 -16.65612 -16.00783 -15.59490 -15.23319 -14.88540 -14.74921 -14.48494 -14.18435 -13.89438 -13.57796 -13.40651 -12.91872 -12.79063 -12.72248 -12.49145 -12.41021 -12.19554 -12.09912 -11.96402 -11.53304 -11.29299 -11.17193 -11.01925 -10.90929 -10.76976 -10.50874 -10.35706 -10.06332 -9.81281 -9.49482 -9.02930 -8.86711 -8.73548 -8.55910 -8.44800 -7.90338 -7.53833 -6.06992 -4.13550 1.33427 1.43062 2.82623 3.12659 3.31645 3.35471 3.38608 3.76177 4.40065 4.58586 4.70971 4.89000 4.94161 5.02452 5.04527 5.13862 5.21379 5.25270 5.33297 5.35634 5.53124 5.58089 5.61938 5.64184 5.85493 5.88319 5.96421 6.05074 6.12353 6.32895 6.39240 6.46872 6.50982 6.53150 6.63291 6.75793 6.79780 6.99736 7.02250 7.35808 7.39502 7.63403 7.67785 7.73806 7.81424 7.97289 8.30803 8.45356 8.86210 9.53174 9.65292 11.00195 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016852 B = 0.004627 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.104184 B = 6050.320650 C = 6904.302817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.625 5.625 3 C 0.076 3.924 4 C 0.484 3.516 5 O -0.502 6.502 6 C 0.099 3.901 7 H 0.102 0.898 8 C -0.061 4.061 9 C -0.099 4.099 10 C -0.122 4.122 11 C -0.122 4.122 12 C -0.119 4.119 13 C -0.108 4.108 14 N -0.494 5.494 15 C 0.044 3.956 16 C -0.130 4.130 17 C 0.255 3.745 18 O -0.583 6.583 19 C -0.528 4.528 20 H 0.056 0.944 21 C 0.072 3.928 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.277 1.277 27 C 0.059 3.941 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.376 0.624 44 H 0.265 0.735 45 H 0.048 0.952 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.057 17.637 9.231 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.362 5.362 3 C -0.067 4.067 4 C 0.270 3.730 5 O -0.376 6.376 6 C -0.013 4.013 7 H 0.120 0.880 8 C -0.062 4.062 9 C -0.118 4.118 10 C -0.140 4.140 11 C -0.140 4.140 12 C -0.138 4.138 13 C -0.126 4.126 14 N -0.216 5.216 15 C -0.083 4.083 16 C -0.169 4.169 17 C 0.215 3.785 18 O -0.390 6.390 19 C -0.567 4.567 20 H 0.074 0.926 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.725 3.275 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.203 1.203 27 C -0.068 4.068 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.225 0.775 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.485 17.471 9.182 19.893 hybrid contribution -1.932 -0.802 -0.474 2.145 sum 0.553 16.669 8.707 18.814 Atomic orbital electron populations 1.21581 0.79763 1.02928 1.01400 1.47929 1.06773 1.06457 1.75049 1.21836 0.97742 0.85504 1.01635 1.21993 0.91422 0.83420 0.76195 1.90825 1.69814 1.30124 1.46821 1.20995 0.88480 0.96541 0.95325 0.87997 1.19377 0.95944 0.97708 0.93131 1.20986 0.94754 0.97927 0.98115 1.21083 0.99940 1.00616 0.92389 1.21120 0.96157 0.98513 0.98190 1.21092 0.96439 0.98697 0.97525 1.21265 1.00512 0.98644 0.92179 1.64129 1.54720 0.98837 1.03943 1.22939 0.97464 0.93047 0.94875 1.23143 0.99475 0.96934 0.97326 1.19461 0.82318 0.85676 0.91053 1.86116 1.35540 1.24081 1.93307 1.21444 1.21236 0.95386 1.18640 0.92588 1.24954 0.96196 0.96510 0.95311 1.69740 1.43505 1.04084 1.36142 0.86585 0.81964 0.77415 0.81576 1.20173 1.21195 1.20297 1.23028 0.96861 0.98157 0.88771 0.93215 0.91698 0.90454 0.92730 0.91407 0.90528 0.85722 0.86072 0.86329 0.86229 0.85791 0.92873 0.92519 0.91578 0.91115 0.77476 0.92518 0.93413 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 10.41 59.85 0.62 1.67 16 2 N -0.63 -8.45 3.27 -189.52 -0.62 -9.08 16 3 C 0.08 0.73 9.95 59.84 0.60 1.33 16 4 C 0.48 8.32 4.34 -10.98 -0.05 8.27 16 5 O -0.50 -10.70 10.63 5.55 0.06 -10.64 16 6 C 0.10 1.63 1.69 -70.02 -0.12 1.51 16 7 H 0.10 1.48 7.40 -51.93 -0.38 1.10 16 8 C -0.06 -0.87 3.30 -104.62 -0.35 -1.21 16 9 C -0.10 -1.19 9.23 -39.58 -0.37 -1.56 16 10 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 11 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 12 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 13 C -0.11 -1.55 7.84 -39.58 -0.31 -1.86 16 14 N -0.49 -10.16 5.18 -226.07 -1.17 -11.33 16 15 C 0.04 0.96 5.18 -2.84 -0.01 0.94 16 16 C -0.13 -3.32 4.86 -24.91 -0.12 -3.44 16 17 C 0.26 6.77 0.87 -89.64 -0.08 6.70 16 18 O -0.58 -16.08 13.16 -35.23 -0.46 -16.54 16 19 C -0.53 -15.08 8.27 -34.44 -0.28 -15.36 16 20 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 21 C 0.07 2.02 5.29 -17.82 -0.09 1.93 16 22 N -0.90 -25.22 10.75 55.43 0.60 -24.62 16 23 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.06 1.36 5.41 -2.30 -0.01 1.35 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.59 8.07 -51.93 -0.42 0.17 16 30 H 0.08 1.12 7.50 -51.93 -0.39 0.73 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.08 0.74 5.06 -51.93 -0.26 0.48 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.12 2.02 5.58 -52.49 -0.29 1.72 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.18 3.12 -51.93 -0.16 1.02 16 41 H 0.07 1.79 7.54 -51.93 -0.39 1.39 16 42 H 0.07 1.95 6.54 -51.93 -0.34 1.61 16 43 H 0.38 10.45 7.56 45.56 0.34 10.79 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 45 H 0.05 1.12 6.29 -51.93 -0.33 0.80 16 46 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -32.28 354.30 -9.02 -41.30 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -5.97 Total: 13.79 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.77 Total: -4.94 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -1.20 Total: -45.03 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.40 Total: -27.18 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.28 -9.02 -41.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.941 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds