Wall clock time and date at job start Tue Mar 31 2020 11:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46492 * 120.00330 * 2 1 4 4 C 1.34783 * 119.99922 * 180.02562 * 2 1 3 5 5 O 1.21290 * 119.99822 * 354.48747 * 4 2 1 6 6 C 1.50697 * 120.00467 * 174.48489 * 4 2 1 7 7 H 1.09002 * 109.46655 * 318.13061 * 6 4 2 8 8 C 1.50697 * 109.46752 * 78.12222 * 6 4 2 9 9 C 1.38241 * 120.00143 * 216.23543 * 8 6 4 10 10 C 1.38231 * 119.99915 * 179.77027 * 9 8 6 11 11 C 1.38236 * 120.00449 * 0.48453 * 10 9 8 12 12 C 1.38241 * 119.99545 * 359.79576 * 11 10 9 13 13 C 1.38235 * 120.00146 * 359.95121 * 12 11 10 14 14 N 1.46896 * 109.47541 * 198.12487 * 6 4 2 15 15 C 1.47439 * 110.99845 * 301.66781 * 14 6 4 16 16 C 1.54324 * 107.23412 * 123.25733 * 15 14 6 17 17 C 1.55133 * 103.01753 * 22.27992 * 16 15 14 18 18 O 1.42905 * 110.99172 * 82.44314 * 17 16 15 19 19 C 1.50698 * 110.99342 * 206.25509 * 17 16 15 20 20 H 1.07998 * 120.00204 * 118.54271 * 19 17 16 21 21 C 1.37878 * 119.99993 * 298.54964 * 19 17 16 22 22 N 1.31517 * 120.00186 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 120.00378 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46812 * 59.99722 * 23 21 19 25 25 H 1.48494 * 109.47446 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46865 * 300.00129 * 23 21 19 27 27 C 1.47848 * 110.99705 * 62.50739 * 14 6 4 28 28 H 1.09005 * 109.46760 * 269.99768 * 1 2 3 29 29 H 1.08997 * 109.47318 * 29.99531 * 1 2 3 30 30 H 1.08998 * 109.47361 * 150.00384 * 1 2 3 31 31 H 1.09000 * 109.47367 * 273.61220 * 3 2 1 32 32 H 1.09005 * 109.47107 * 33.61438 * 3 2 1 33 33 H 1.09002 * 109.47441 * 153.61319 * 3 2 1 34 34 H 1.08002 * 119.99803 * 0.02562 * 9 8 6 35 35 H 1.08004 * 119.99963 * 180.25926 * 10 9 8 36 36 H 1.07993 * 120.00511 * 179.76486 * 11 10 9 37 37 H 1.07995 * 119.99557 * 179.97438 * 12 11 10 38 38 H 1.07993 * 120.00209 * 180.02562 * 13 12 11 39 39 H 1.09007 * 109.88846 * 242.66159 * 15 14 6 40 40 H 1.09000 * 109.89050 * 3.68658 * 15 14 6 41 41 H 1.09006 * 110.70584 * 140.66264 * 16 15 14 42 42 H 1.08994 * 110.70362 * 263.72547 * 16 15 14 43 43 H 0.96696 * 114.00348 * 61.44448 * 18 17 16 44 44 H 0.96999 * 120.00522 * 180.02562 * 22 21 19 45 45 H 1.09001 * 110.37285 * 332.46696 * 27 14 6 46 46 H 1.09006 * 110.37217 * 94.80827 * 27 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5366 -2.2153 0.0999 6 6 3.6406 -1.1704 -0.1259 7 1 3.9441 -0.4393 -0.8754 8 6 4.2563 -0.8131 1.2023 9 6 5.4064 -0.0475 1.2475 10 6 5.9684 0.2842 2.4661 11 6 5.3861 -0.1581 3.6392 12 6 4.2392 -0.9286 3.5938 13 6 3.6742 -1.2559 2.3754 14 7 4.0953 -2.5066 -0.5329 15 6 3.6675 -3.5291 0.4394 16 6 2.8473 -4.5819 -0.3354 17 6 3.3348 -4.3985 -1.7967 18 8 4.5571 -5.1040 -2.0211 19 6 2.2760 -4.8321 -2.7775 20 1 1.8612 -4.1192 -3.4747 21 6 1.8367 -6.1390 -2.7847 22 7 2.3420 -7.0073 -1.9360 23 14 0.5237 -6.6765 -4.0000 24 1 1.0105 -6.4539 -5.3851 25 1 0.2284 -8.1185 -3.8042 26 1 -0.7120 -5.8838 -3.7762 27 6 3.5580 -2.8670 -1.8623 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 2.3232 1.6157 -1.0256 32 1 1.6380 2.0112 0.5689 33 1 3.1765 1.1230 0.4567 34 1 5.8635 0.2950 0.3309 35 1 6.8647 0.8859 2.5015 36 1 5.8273 0.0979 4.5911 37 1 3.7845 -1.2744 4.5103 38 1 2.7780 -1.8574 2.3400 39 1 4.5408 -3.9989 0.8919 40 1 3.0509 -3.0707 1.2125 41 1 3.0730 -5.5864 0.0229 42 1 1.7802 -4.3757 -0.2536 43 1 4.4881 -6.0603 -1.8952 44 1 2.0333 -7.9269 -1.9413 45 1 2.6136 -2.3532 -2.0418 46 1 4.2788 -2.6215 -2.6422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:46 Heat of formation + Delta-G solvation = -49.372472 kcal Electronic energy + Delta-G solvation = -28715.771669 eV Core-core repulsion = 24991.285087 eV Total energy + Delta-G solvation = -3724.486582 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.17174 -39.67761 -39.34663 -36.77149 -36.23864 -34.18744 -33.45214 -31.85502 -30.75308 -29.83424 -29.24106 -27.79988 -26.73144 -25.53870 -23.62649 -22.72032 -21.88856 -21.42713 -20.14787 -19.03459 -18.28078 -17.77314 -17.37842 -16.91184 -16.61954 -16.60246 -16.22856 -15.90679 -15.67765 -15.35248 -14.75567 -14.63359 -14.38485 -14.11118 -13.98151 -13.72505 -13.49481 -13.47905 -13.45799 -13.28904 -13.12330 -12.92035 -12.89252 -12.74093 -12.60591 -12.31520 -12.27205 -11.90176 -11.80350 -11.63935 -11.11247 -11.02423 -10.61021 -10.09850 -9.78395 -9.70699 -9.64651 -9.17845 -8.21434 -6.36675 0.38582 0.52053 1.36096 1.37890 1.45639 1.54513 2.05496 2.36002 2.75537 3.02240 3.24367 3.50564 3.69735 3.91416 3.97104 4.05064 4.18759 4.21670 4.27892 4.33158 4.38292 4.41324 4.45698 4.55285 4.66011 4.73555 4.74161 4.83913 4.86022 4.87816 4.88085 5.04961 5.05792 5.17285 5.33888 5.48308 5.52042 5.57484 5.64157 5.64955 5.70297 5.78629 5.87668 6.02605 6.11947 6.19420 6.33755 6.66362 7.16810 7.33190 7.43602 8.84159 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016852 B = 0.004627 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.104184 B = 6050.320650 C = 6904.302817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.621 5.621 3 C 0.069 3.931 4 C 0.479 3.521 5 O -0.557 6.557 6 C 0.101 3.899 7 H 0.123 0.877 8 C -0.076 4.076 9 C -0.100 4.100 10 C -0.115 4.115 11 C -0.114 4.114 12 C -0.126 4.126 13 C -0.127 4.127 14 N -0.494 5.494 15 C 0.059 3.941 16 C -0.116 4.116 17 C 0.241 3.759 18 O -0.587 6.587 19 C -0.558 4.558 20 H 0.047 0.953 21 C 0.029 3.971 22 N -0.912 5.912 23 Si 0.959 3.041 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.277 1.277 27 C 0.071 3.929 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.133 0.867 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.042 0.958 43 H 0.371 0.629 44 H 0.268 0.732 45 H 0.039 0.961 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.081 20.545 9.881 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.355 5.355 3 C -0.073 4.073 4 C 0.265 3.735 5 O -0.435 6.435 6 C -0.011 4.011 7 H 0.141 0.859 8 C -0.077 4.077 9 C -0.119 4.119 10 C -0.133 4.133 11 C -0.132 4.132 12 C -0.144 4.144 13 C -0.146 4.146 14 N -0.216 5.216 15 C -0.068 4.068 16 C -0.155 4.155 17 C 0.201 3.799 18 O -0.395 6.395 19 C -0.596 4.596 20 H 0.066 0.934 21 C -0.171 4.171 22 N -0.551 5.551 23 Si 0.784 3.216 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.203 1.203 27 C -0.056 4.056 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.160 0.840 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.150 0.850 38 H 0.112 0.888 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.219 0.781 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.515 20.448 9.837 22.962 hybrid contribution -2.242 -1.595 -0.590 2.814 sum 1.274 18.853 9.247 21.037 Atomic orbital electron populations 1.21673 0.79012 1.03090 1.01986 1.48005 1.07520 1.06854 1.73124 1.22127 0.97841 0.83972 1.03316 1.22075 0.91797 0.83761 0.75823 1.90805 1.70727 1.32249 1.49752 1.21082 0.88386 0.94246 0.97434 0.85890 1.19228 0.97312 0.99607 0.91549 1.21224 0.93701 0.97187 0.99762 1.21485 1.00463 0.99853 0.91502 1.21511 0.95020 0.96902 0.99800 1.21301 0.97131 0.98931 0.97038 1.21116 1.00229 0.99640 0.93594 1.64028 1.54776 1.00520 1.02293 1.22702 0.96508 0.92562 0.95012 1.22866 0.98274 0.96636 0.97759 1.19650 0.81714 0.87547 0.91004 1.86101 1.36206 1.23764 1.93405 1.21711 1.22497 0.95969 1.19465 0.93442 1.25701 0.98082 0.96413 0.96931 1.69839 1.44149 1.04258 1.36869 0.85608 0.79178 0.77260 0.79530 1.19392 1.20167 1.20285 1.22783 0.96571 0.95769 0.90497 0.92454 0.88016 0.93684 0.90984 0.88699 0.90371 0.84014 0.82771 0.83232 0.84958 0.88830 0.93525 0.91427 0.94061 0.93874 0.78082 0.92293 0.94253 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.01 10.41 127.77 1.33 3.34 16 2 N -0.62 -16.26 3.27 -871.89 -2.85 -19.12 16 3 C 0.07 1.13 9.95 127.77 1.27 2.40 16 4 C 0.48 16.76 4.34 87.66 0.38 17.14 16 5 O -0.56 -25.11 10.63 -3.06 -0.03 -25.14 16 6 C 0.10 3.26 1.69 43.42 0.07 3.33 16 7 H 0.12 3.38 7.40 -2.39 -0.02 3.36 16 8 C -0.08 -2.07 3.30 -19.86 -0.07 -2.14 16 9 C -0.10 -2.10 9.23 22.27 0.21 -1.89 16 10 C -0.12 -1.93 10.05 22.27 0.22 -1.70 16 11 C -0.11 -1.98 10.05 22.27 0.22 -1.75 16 12 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 13 C -0.13 -3.62 7.84 22.27 0.17 -3.44 16 14 N -0.49 -20.63 5.18 -869.16 -4.50 -25.14 16 15 C 0.06 2.72 5.18 86.65 0.45 3.17 16 16 C -0.12 -6.30 4.86 31.77 0.15 -6.14 16 17 C 0.24 13.32 0.87 -10.16 -0.01 13.31 16 18 O -0.59 -33.54 13.16 -148.98 -1.96 -35.50 16 19 C -0.56 -33.03 8.27 25.60 0.21 -32.82 16 20 H 0.05 2.80 7.79 -2.91 -0.02 2.78 16 21 C 0.03 1.67 5.29 84.65 0.45 2.12 16 22 N -0.91 -52.95 10.75 21.45 0.23 -52.72 16 23 Si 0.96 45.39 29.54 68.60 2.03 47.42 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 27 C 0.07 3.40 5.41 86.77 0.47 3.87 16 28 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.10 1.63 8.07 -2.39 -0.02 1.61 16 30 H 0.04 1.36 7.50 -2.39 -0.02 1.35 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.08 8.10 -2.38 -0.02 1.06 16 33 H 0.08 1.30 5.06 -2.39 -0.01 1.29 16 34 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.09 3.21 5.58 -2.91 -0.02 3.19 16 39 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.07 2.97 3.12 -2.39 -0.01 2.97 16 41 H 0.04 2.36 7.54 -2.38 -0.02 2.35 16 42 H 0.04 2.54 6.54 -2.39 -0.02 2.53 16 43 H 0.37 21.49 7.56 -74.06 -0.56 20.93 16 44 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 45 H 0.04 1.92 6.29 -2.39 -0.02 1.91 16 46 H 0.07 3.28 8.14 -2.38 -0.02 3.26 16 Total: -1.00 -73.94 354.30 -0.89 -74.83 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: 0.44 Total: 39.15 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 5.76 Total: -3.79 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -7.13 Total: -96.97 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -1.99 Total: -60.64 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.94 -0.89 -74.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.458 kcal (2) G-P(sol) polarization free energy of solvation -73.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds