Wall clock time and date at job start Tue Mar 31 2020 12:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00099 * 2 1 4 4 H 1.09002 * 109.47597 * 29.99466 * 3 2 1 5 5 C 1.50697 * 109.47652 * 149.99833 * 3 2 1 6 6 O 1.21285 * 119.99579 * 19.67941 * 5 3 2 7 7 N 1.34777 * 120.00241 * 199.68487 * 5 3 2 8 8 C 1.47085 * 120.88129 * 175.59537 * 7 5 3 9 9 C 1.53235 * 108.52186 * 231.20475 * 8 7 5 10 10 N 1.46907 * 109.33766 * 306.16992 * 9 8 7 11 11 C 1.46900 * 110.99575 * 187.25185 * 10 9 8 12 12 C 1.50706 * 109.46821 * 169.99740 * 11 10 9 13 13 H 1.07998 * 119.99486 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99871 * 179.72393 * 12 11 10 15 15 N 1.31510 * 120.00155 * 0.27955 * 14 12 11 16 16 Si 1.86801 * 119.99950 * 180.27607 * 14 12 11 17 17 H 1.48501 * 109.46888 * 90.00044 * 16 14 12 18 18 H 1.48490 * 109.47364 * 210.00048 * 16 14 12 19 19 H 1.48500 * 109.47218 * 330.00595 * 16 14 12 20 20 C 1.46898 * 111.27075 * 63.10470 * 10 9 8 21 21 C 1.47075 * 120.88240 * 355.61147 * 7 5 3 22 22 C 1.50703 * 109.47054 * 270.00004 * 3 2 1 23 23 C 1.38235 * 119.99888 * 315.20247 * 22 3 2 24 24 C 1.38237 * 120.00141 * 179.81238 * 23 22 3 25 25 C 1.38234 * 119.99827 * 0.39700 * 24 23 22 26 26 C 1.38235 * 119.99855 * 359.85652 * 25 24 23 27 27 C 1.38231 * 120.00133 * 359.95448 * 26 25 24 28 28 H 1.09001 * 109.47591 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47248 * 300.00225 * 1 2 3 30 30 H 1.09002 * 109.47108 * 60.00091 * 1 2 3 31 31 H 1.09001 * 109.63097 * 111.48892 * 8 7 5 32 32 H 1.09000 * 109.62532 * 350.91382 * 8 7 5 33 33 H 1.08993 * 109.49369 * 186.21096 * 9 8 7 34 34 H 1.09002 * 109.49280 * 66.12418 * 9 8 7 35 35 H 1.09004 * 109.47186 * 50.00271 * 11 10 9 36 36 H 1.08997 * 109.47458 * 289.99939 * 11 10 9 37 37 H 0.97000 * 119.99896 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.49389 * 56.84998 * 20 10 9 39 39 H 1.08994 * 109.49260 * 176.93221 * 20 10 9 40 40 H 1.08997 * 109.63290 * 248.50872 * 21 7 5 41 41 H 1.08997 * 109.62673 * 9.08941 * 21 7 5 42 42 H 1.08003 * 119.99847 * 0.02562 * 23 22 3 43 43 H 1.07997 * 119.99987 * 180.23485 * 24 23 22 44 44 H 1.08001 * 120.00064 * 179.83675 * 25 24 23 45 45 H 1.08004 * 119.99821 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.99882 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 3.3386 1.2639 0.7104 6 8 3.9162 0.2073 0.8548 7 7 3.8846 2.4009 1.1854 8 6 5.1315 2.3714 1.9649 9 6 4.9130 3.1565 3.2626 10 7 4.4137 4.4999 2.9402 11 6 4.3543 5.3420 4.1424 12 6 4.0774 6.7686 3.7433 13 1 3.9572 7.0240 2.7008 14 6 3.9713 7.7465 4.7094 15 7 4.1173 7.4354 5.9788 16 14 3.6205 9.5135 4.2153 17 1 2.1526 9.7360 4.1821 18 1 4.2387 10.4354 5.2015 19 1 4.1910 9.7736 2.8691 20 6 3.1048 4.4369 2.2763 21 6 3.2492 3.7041 0.9382 22 6 2.2145 1.7643 -1.4209 23 6 2.7530 0.9000 -2.3556 24 6 2.9369 1.3196 -3.6599 25 6 2.5898 2.6062 -4.0274 26 6 2.0562 3.4722 -3.0913 27 6 1.8687 3.0513 -1.7881 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 5.9344 2.8317 1.3891 32 1 5.3915 1.3394 2.2007 33 1 5.8570 3.2389 3.8012 34 1 4.1835 2.6368 3.8837 35 1 5.3070 5.2906 4.6695 36 1 3.5578 4.9864 4.7960 37 1 4.0430 8.1235 6.6584 38 1 2.4005 3.8992 2.9112 39 1 2.7375 5.4478 2.0998 40 1 3.8711 4.2927 0.2637 41 1 2.2648 3.5534 0.4953 42 1 3.0270 -0.1043 -2.0678 43 1 3.3541 0.6431 -4.3911 44 1 2.7359 2.9349 -5.0457 45 1 1.7854 4.4776 -3.3784 46 1 1.4522 3.7280 -1.0567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:54 Heat of formation + Delta-G solvation = -31.893928 kcal Electronic energy + Delta-G solvation = -27381.932857 eV Core-core repulsion = 23658.204201 eV Total energy + Delta-G solvation = -3723.728656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.68571 -39.06616 -37.92060 -37.09474 -34.48471 -32.70465 -32.15295 -31.14601 -30.69620 -28.62300 -27.76424 -26.18251 -25.17793 -23.44260 -22.68821 -22.41890 -21.66341 -20.52158 -18.84581 -17.70588 -17.12762 -16.73478 -16.38937 -16.05780 -15.67469 -14.87145 -14.78280 -14.70548 -14.69629 -14.47268 -14.34307 -13.93425 -13.66369 -13.50326 -13.24836 -13.07061 -12.68506 -12.47712 -12.32298 -11.94283 -11.71228 -11.48319 -11.33131 -11.21641 -11.07331 -10.95425 -10.79634 -10.65843 -10.57682 -10.17427 -9.91897 -9.66046 -9.31400 -9.09019 -8.89656 -8.54650 -8.46277 -7.37238 -6.09662 -4.11969 1.05413 1.23046 2.61499 2.76877 3.26243 3.33490 3.36852 3.52858 3.81536 4.35155 4.39171 4.50962 4.62401 4.76994 4.82712 4.87034 4.95459 5.16097 5.16993 5.21254 5.25982 5.30111 5.34316 5.40812 5.46552 5.50818 5.61036 5.70071 5.74873 5.81991 5.86047 6.00497 6.24094 6.24906 6.31015 6.33088 6.39059 6.40248 6.60095 6.78045 6.84981 7.17693 7.23801 7.48450 7.70328 7.97278 8.07806 8.21998 8.43212 8.95139 9.52758 11.01127 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.003451 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.162937 B = 8111.944815 C = 8954.448386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.115 3.885 4 H 0.091 0.909 5 C 0.523 3.477 6 O -0.527 6.527 7 N -0.602 5.602 8 C 0.120 3.880 9 C 0.041 3.959 10 N -0.534 5.534 11 C 0.193 3.807 12 C -0.510 4.510 13 H 0.064 0.936 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.272 1.272 20 C 0.049 3.951 21 C 0.104 3.896 22 C -0.114 4.114 23 C -0.084 4.084 24 C -0.124 4.124 25 C -0.113 4.113 26 C -0.120 4.120 27 C -0.107 4.107 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.027 0.973 35 H 0.032 0.968 36 H -0.009 1.009 37 H 0.262 0.738 38 H 0.025 0.975 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.129 0.871 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 -10.848 -16.865 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.271 6.271 3 C 0.054 3.946 4 H 0.109 0.891 5 C 0.309 3.691 6 O -0.403 6.403 7 N -0.337 5.337 8 C -0.002 4.002 9 C -0.089 4.089 10 N -0.260 5.260 11 C 0.069 3.931 12 C -0.549 4.549 13 H 0.082 0.918 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.081 4.081 21 C -0.018 4.018 22 C -0.115 4.115 23 C -0.102 4.102 24 C -0.142 4.142 25 C -0.131 4.131 26 C -0.138 4.138 27 C -0.125 4.125 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.009 0.991 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.147 0.853 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.041 -11.300 -16.909 21.216 hybrid contribution -1.007 1.017 0.502 1.516 sum -7.048 -10.283 -16.408 20.607 Atomic orbital electron populations 1.22907 0.80490 1.03237 1.00285 1.88032 1.19794 1.24527 1.94732 1.20759 0.94362 0.86887 0.92621 0.89098 1.20015 0.86332 0.83831 0.78930 1.90679 1.62538 1.29670 1.57424 1.48116 1.25938 1.06305 1.53301 1.21780 0.85201 1.01148 0.92081 1.22421 1.00725 0.90666 0.95046 1.62079 1.24560 1.09515 1.29800 1.19736 0.96627 0.91543 0.85235 1.21126 1.48353 0.91989 0.93418 0.91798 1.24991 0.95459 0.99229 0.94851 1.69953 1.50096 1.33758 0.99829 0.86503 0.78273 0.84266 0.78418 1.20741 1.21233 1.19718 1.22360 0.91562 1.00981 0.93157 1.22240 0.97522 0.83208 0.98878 1.19988 1.01834 0.94943 0.94745 1.21047 0.96508 0.99947 0.92685 1.21177 1.00469 0.96367 0.96183 1.21225 0.98429 0.93919 0.99573 1.21123 0.99735 0.99859 0.93086 1.21156 0.99670 0.94909 0.96777 0.89048 0.93638 0.93703 0.90774 0.89349 0.89877 0.95472 0.94958 0.99083 0.92838 0.95704 0.88343 0.90218 0.90432 0.85349 0.85916 0.86002 0.85615 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.81 101.05 1.09 1.35 16 2 O -0.35 -4.76 9.46 -54.33 -0.51 -5.27 16 3 C 0.12 1.49 2.01 -29.03 -0.06 1.43 16 4 H 0.09 1.01 6.24 -51.93 -0.32 0.69 16 5 C 0.52 8.38 6.90 -10.99 -0.08 8.31 16 6 O -0.53 -10.14 16.09 -13.54 -0.22 -10.36 16 7 N -0.60 -9.32 3.01 -172.46 -0.52 -9.84 16 8 C 0.12 1.90 6.58 -3.60 -0.02 1.88 16 9 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 10 N -0.53 -10.87 4.62 -235.76 -1.09 -11.95 16 11 C 0.19 4.83 4.72 -4.97 -0.02 4.80 16 12 C -0.51 -13.62 8.41 -34.44 -0.29 -13.91 16 13 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16 14 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -25.96 13.29 55.43 0.74 -25.22 16 16 Si 0.90 20.81 29.54 -169.99 -5.02 15.78 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 C 0.05 0.86 5.46 -3.70 -0.02 0.84 16 21 C 0.10 1.47 5.84 -3.60 -0.02 1.45 16 22 C -0.11 -1.35 4.69 -104.62 -0.49 -1.84 16 23 C -0.08 -0.99 9.31 -39.58 -0.37 -1.36 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.11 -1.03 10.05 -39.58 -0.40 -1.42 16 26 C -0.12 -1.11 10.05 -39.59 -0.40 -1.50 16 27 C -0.11 -1.09 8.56 -39.59 -0.34 -1.42 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.40 7.09 -51.93 -0.37 1.03 16 33 H 0.08 1.43 7.99 -51.93 -0.41 1.01 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 36 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 1.81 6.67 -51.93 -0.35 1.47 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 0.88 3.14 -51.93 -0.16 0.72 16 42 H 0.13 1.63 7.92 -52.48 -0.42 1.22 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 46 H 0.13 1.09 6.34 -52.49 -0.33 0.76 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -32.35 369.85 -9.91 -42.26 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.93 Total: -0.08 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.93 Total: -0.89 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.87 Total: -47.01 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.73 Total: -15.63 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.35 -9.91 -42.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.367 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds