Wall clock time and date at job start Tue Mar 31 2020 12:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 113.99807 * 2 1 4 4 H 1.08992 * 109.46846 * 29.99484 * 3 2 1 5 5 C 1.50696 * 109.46826 * 269.99589 * 3 2 1 6 6 O 1.21284 * 120.00111 * 341.11313 * 5 3 2 7 7 N 1.34775 * 119.99932 * 161.11497 * 5 3 2 8 8 C 1.47082 * 120.88022 * 174.70394 * 7 5 3 9 9 C 1.53241 * 108.52084 * 231.16401 * 8 7 5 10 10 N 1.46908 * 109.33707 * 306.16748 * 9 8 7 11 11 C 1.46895 * 111.00039 * 187.25175 * 10 9 8 12 12 C 1.50706 * 109.47002 * 65.69899 * 11 10 9 13 13 H 1.08000 * 119.99714 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99900 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99829 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00330 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47286 * 89.99731 * 16 14 12 18 18 H 1.48497 * 109.47164 * 210.00209 * 16 14 12 19 19 H 1.48499 * 109.46720 * 329.99611 * 16 14 12 20 20 C 1.46901 * 111.26654 * 63.10512 * 10 9 8 21 21 C 1.47076 * 120.88389 * 354.67829 * 7 5 3 22 22 C 1.50696 * 109.46842 * 149.99937 * 3 2 1 23 23 C 1.38234 * 120.00704 * 43.10290 * 22 3 2 24 24 C 1.38232 * 120.00022 * 179.78880 * 23 22 3 25 25 C 1.38235 * 120.00496 * 0.44134 * 24 23 22 26 26 C 1.38241 * 119.99314 * 359.81316 * 25 24 23 27 27 C 1.38233 * 120.00469 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47605 * 300.00711 * 1 2 3 29 29 H 1.09004 * 109.47148 * 60.00342 * 1 2 3 30 30 H 1.09001 * 109.47317 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.63195 * 350.86665 * 8 7 5 32 32 H 1.08996 * 109.63441 * 111.45318 * 8 7 5 33 33 H 1.09000 * 109.49781 * 66.12585 * 9 8 7 34 34 H 1.08997 * 109.49351 * 186.21346 * 9 8 7 35 35 H 1.08995 * 109.47140 * 185.70020 * 11 10 9 36 36 H 1.09004 * 109.47575 * 305.70370 * 11 10 9 37 37 H 0.96998 * 119.99802 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.49344 * 176.93385 * 20 10 9 39 39 H 1.09002 * 109.49401 * 56.85790 * 20 10 9 40 40 H 1.08994 * 109.62831 * 248.55151 * 21 7 5 41 41 H 1.09005 * 109.62342 * 9.12722 * 21 7 5 42 42 H 1.08007 * 119.99651 * 359.97438 * 23 22 3 43 43 H 1.08006 * 119.99655 * 180.27513 * 24 23 22 44 44 H 1.07988 * 120.00224 * 179.83641 * 25 24 23 45 45 H 1.08002 * 119.99639 * 180.02562 * 26 25 24 46 46 H 1.07994 * 120.00111 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2146 1.7644 -1.4208 6 8 2.2264 0.9547 -2.3238 7 7 2.3843 3.0744 -1.6881 8 6 2.6999 3.5323 -3.0497 9 6 3.9264 4.4486 -2.9830 10 7 3.6806 5.5202 -2.0086 11 6 4.7594 6.5168 -2.0388 12 6 4.7529 7.2239 -3.3697 13 1 4.0204 6.9596 -4.1180 14 6 5.6815 8.2088 -3.6315 15 7 5.6762 8.8255 -4.7931 16 14 6.9481 8.6664 -2.3369 17 1 8.1592 7.8249 -2.5102 18 1 7.3141 10.0977 -2.4867 19 1 6.3775 8.4403 -0.9847 20 6 3.5020 4.9787 -0.6548 21 6 2.2582 4.0841 -0.6261 22 6 3.3385 1.2640 0.7104 23 6 4.2169 0.2232 0.4736 24 6 5.4371 0.1874 1.1220 25 6 5.7754 1.1877 2.0142 26 6 4.8948 2.2258 2.2550 27 6 3.6764 2.2639 1.6033 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.9191 2.6730 -3.6835 32 1 1.8524 4.0840 -3.4563 33 1 4.7969 3.8695 -2.6749 34 1 4.1083 4.8849 -3.9652 35 1 4.6055 7.2430 -1.2408 36 1 5.7185 6.0186 -1.8968 37 1 6.3292 9.5187 -4.9772 38 1 3.3761 5.7992 0.0515 39 1 4.3783 4.3921 -0.3791 40 1 1.3681 4.6888 -0.7997 41 1 2.1851 3.5894 0.3425 42 1 3.9509 -0.5606 -0.2204 43 1 6.1252 -0.6235 0.9336 44 1 6.7276 1.1583 2.5227 45 1 5.1592 3.0075 2.9517 46 1 2.9887 3.0751 1.7911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602206675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:55 Heat of formation + Delta-G solvation = -27.303707 kcal Electronic energy + Delta-G solvation = -27714.997271 eV Core-core repulsion = 23991.467662 eV Total energy + Delta-G solvation = -3723.529609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.74432 -39.02571 -38.08985 -37.04956 -34.59107 -32.64031 -32.27891 -31.19681 -30.70333 -28.99187 -27.72246 -26.36066 -25.41363 -23.38132 -22.74842 -22.25708 -21.57703 -20.49756 -18.85604 -17.72035 -17.24803 -16.98797 -16.67537 -15.96806 -15.71009 -15.02745 -14.78766 -14.67436 -14.58933 -14.58585 -14.31890 -14.07082 -13.60321 -13.51767 -13.33555 -13.02200 -12.81225 -12.49415 -12.40875 -12.27792 -11.73626 -11.62042 -11.33100 -11.29682 -11.08935 -10.93527 -10.84078 -10.73665 -10.65752 -10.32385 -9.88183 -9.55621 -9.35578 -9.06675 -8.83613 -8.63427 -8.54857 -7.51169 -6.10542 -4.08635 1.06420 1.25467 2.56862 2.87188 3.24054 3.32045 3.32517 3.41640 3.73463 4.35903 4.36788 4.45342 4.53378 4.63042 4.81021 4.85542 4.94448 5.08511 5.09668 5.17092 5.19637 5.27301 5.31559 5.35816 5.44667 5.46823 5.56227 5.70480 5.71901 5.83976 5.87961 5.91151 6.05281 6.25664 6.29563 6.31110 6.35568 6.44707 6.58578 6.74074 6.78652 6.81353 6.89724 7.43617 7.50693 7.78138 7.91657 8.17291 8.57831 8.97038 9.50676 11.02382 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.003917 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.690139 B = 7145.975728 C = 8265.756439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.118 3.882 4 H 0.089 0.911 5 C 0.496 3.504 6 O -0.528 6.528 7 N -0.603 5.603 8 C 0.116 3.884 9 C 0.051 3.949 10 N -0.525 5.525 11 C 0.164 3.836 12 C -0.512 4.512 13 H 0.082 0.918 14 C 0.070 3.930 15 N -0.898 5.898 16 Si 0.875 3.125 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.268 1.268 20 C 0.038 3.962 21 C 0.105 3.895 22 C -0.088 4.088 23 C -0.082 4.082 24 C -0.123 4.123 25 C -0.112 4.112 26 C -0.119 4.119 27 C -0.105 4.105 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.025 0.975 34 H 0.103 0.897 35 H 0.030 0.970 36 H -0.016 1.016 37 H 0.264 0.736 38 H 0.081 0.919 39 H 0.031 0.969 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.129 0.871 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.729 -15.485 15.873 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.056 3.944 4 H 0.107 0.893 5 C 0.282 3.718 6 O -0.404 6.404 7 N -0.338 5.338 8 C -0.006 4.006 9 C -0.078 4.078 10 N -0.249 5.249 11 C 0.038 3.962 12 C -0.550 4.550 13 H 0.100 0.900 14 C -0.132 4.132 15 N -0.537 5.537 16 Si 0.703 3.297 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.192 1.192 20 C -0.091 4.091 21 C -0.018 4.018 22 C -0.089 4.089 23 C -0.101 4.101 24 C -0.141 4.141 25 C -0.130 4.130 26 C -0.137 4.137 27 C -0.123 4.123 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.122 0.878 35 H 0.048 0.952 36 H 0.002 0.998 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.963 -15.722 15.141 22.910 hybrid contribution 1.352 0.359 0.846 1.635 sum -5.611 -15.363 15.987 22.871 Atomic orbital electron populations 1.22893 0.80440 1.03383 1.00132 1.88008 1.20064 1.24506 1.94489 1.20771 0.94000 0.86947 0.92656 0.89286 1.21009 0.77323 0.82235 0.91191 1.90686 1.50118 1.52689 1.46898 1.48241 1.69300 1.05409 1.10845 1.21871 0.98519 0.98049 0.82181 1.22388 0.94392 0.91603 0.99432 1.61920 1.47069 1.13049 1.02891 1.20177 0.86938 0.90128 0.99001 1.21006 1.16327 1.18829 0.98859 0.90044 1.24891 0.97243 0.95857 0.95226 1.69889 1.36347 1.25294 1.22159 0.86866 0.82247 0.77940 0.82693 1.20357 1.21105 1.19233 1.22416 0.95901 0.97379 0.93453 1.22087 0.99773 0.90019 0.89918 1.19288 0.94356 0.96906 0.98328 1.21046 0.92995 0.97579 0.98434 1.21186 0.96614 0.99158 0.97098 1.21231 0.99429 0.94428 0.97916 1.21093 0.93921 0.98635 1.00080 1.21024 0.97556 0.97795 0.95949 0.93749 0.93676 0.88976 0.89328 0.90637 0.95672 0.87846 0.95207 0.99830 0.92594 0.90043 0.95090 0.90273 0.90294 0.85306 0.85817 0.85925 0.85596 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.81 101.05 1.09 1.35 16 2 O -0.35 -4.51 9.39 -54.39 -0.51 -5.02 16 3 C 0.12 1.45 2.01 -29.04 -0.06 1.39 16 4 H 0.09 0.86 6.18 -51.93 -0.32 0.54 16 5 C 0.50 7.61 6.86 -10.99 -0.08 7.54 16 6 O -0.53 -9.89 16.09 -13.61 -0.22 -10.11 16 7 N -0.60 -8.99 3.01 -172.47 -0.52 -9.51 16 8 C 0.12 1.90 6.58 -3.60 -0.02 1.88 16 9 C 0.05 0.96 5.46 -3.70 -0.02 0.94 16 10 N -0.52 -10.33 4.62 -235.76 -1.09 -11.42 16 11 C 0.16 3.81 3.79 -4.98 -0.02 3.79 16 12 C -0.51 -14.06 8.96 -34.44 -0.31 -14.37 16 13 H 0.08 2.43 7.37 -52.49 -0.39 2.04 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 16 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 20 C 0.04 0.59 5.62 -3.70 -0.02 0.57 16 21 C 0.11 1.33 6.21 -3.61 -0.02 1.30 16 22 C -0.09 -1.07 4.85 -104.62 -0.51 -1.58 16 23 C -0.08 -1.04 9.33 -39.59 -0.37 -1.41 16 24 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 25 C -0.11 -1.12 10.05 -39.58 -0.40 -1.51 16 26 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 27 C -0.11 -1.10 8.81 -39.58 -0.35 -1.44 16 28 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.48 7.10 -51.93 -0.37 1.12 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 2.16 6.67 -51.93 -0.35 1.81 16 35 H 0.03 0.70 7.03 -51.93 -0.36 0.33 16 36 H -0.02 -0.38 7.55 -51.93 -0.39 -0.77 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 38 H 0.08 1.15 7.99 -51.93 -0.41 0.74 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.77 2.91 -51.93 -0.15 0.62 16 42 H 0.13 1.71 7.87 -52.48 -0.41 1.29 16 43 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 46 H 0.13 1.03 6.26 -52.49 -0.33 0.71 16 LS Contribution 366.54 15.07 5.52 5.52 Total: -1.00 -33.26 366.54 -9.56 -42.83 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.88 Total: 0.56 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -1.97 Total: -2.99 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.83 Total: -47.13 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.73 Total: -15.13 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.26 -9.56 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.522 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds