Wall clock time and date at job start Tue Mar 31 2020 12:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 113.99807 * 2 1 4 4 H 1.08992 * 109.46846 * 29.99484 * 3 2 1 5 5 C 1.50696 * 109.46826 * 269.99589 * 3 2 1 6 6 O 1.21284 * 120.00111 * 341.11313 * 5 3 2 7 7 N 1.34775 * 119.99932 * 161.11497 * 5 3 2 8 8 C 1.47082 * 120.88022 * 174.70394 * 7 5 3 9 9 C 1.53241 * 108.52084 * 231.16401 * 8 7 5 10 10 N 1.46908 * 109.33707 * 306.16748 * 9 8 7 11 11 C 1.46895 * 111.00039 * 187.25175 * 10 9 8 12 12 C 1.50706 * 109.47002 * 65.69899 * 11 10 9 13 13 H 1.08000 * 119.99714 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99900 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99829 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00330 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47286 * 89.99731 * 16 14 12 18 18 H 1.48497 * 109.47164 * 210.00209 * 16 14 12 19 19 H 1.48499 * 109.46720 * 329.99611 * 16 14 12 20 20 C 1.46901 * 111.26654 * 63.10512 * 10 9 8 21 21 C 1.47076 * 120.88389 * 354.67829 * 7 5 3 22 22 C 1.50696 * 109.46842 * 149.99937 * 3 2 1 23 23 C 1.38234 * 120.00704 * 43.10290 * 22 3 2 24 24 C 1.38232 * 120.00022 * 179.78880 * 23 22 3 25 25 C 1.38235 * 120.00496 * 0.44134 * 24 23 22 26 26 C 1.38241 * 119.99314 * 359.81316 * 25 24 23 27 27 C 1.38233 * 120.00469 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47605 * 300.00711 * 1 2 3 29 29 H 1.09004 * 109.47148 * 60.00342 * 1 2 3 30 30 H 1.09001 * 109.47317 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.63195 * 350.86665 * 8 7 5 32 32 H 1.08996 * 109.63441 * 111.45318 * 8 7 5 33 33 H 1.09000 * 109.49781 * 66.12585 * 9 8 7 34 34 H 1.08997 * 109.49351 * 186.21346 * 9 8 7 35 35 H 1.08995 * 109.47140 * 185.70020 * 11 10 9 36 36 H 1.09004 * 109.47575 * 305.70370 * 11 10 9 37 37 H 0.96998 * 119.99802 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.49344 * 176.93385 * 20 10 9 39 39 H 1.09002 * 109.49401 * 56.85790 * 20 10 9 40 40 H 1.08994 * 109.62831 * 248.55151 * 21 7 5 41 41 H 1.09005 * 109.62342 * 9.12722 * 21 7 5 42 42 H 1.08007 * 119.99651 * 359.97438 * 23 22 3 43 43 H 1.08006 * 119.99655 * 180.27513 * 24 23 22 44 44 H 1.07988 * 120.00224 * 179.83641 * 25 24 23 45 45 H 1.08002 * 119.99639 * 180.02562 * 26 25 24 46 46 H 1.07994 * 120.00111 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2146 1.7644 -1.4208 6 8 2.2264 0.9547 -2.3238 7 7 2.3843 3.0744 -1.6881 8 6 2.6999 3.5323 -3.0497 9 6 3.9264 4.4486 -2.9830 10 7 3.6806 5.5202 -2.0086 11 6 4.7594 6.5168 -2.0388 12 6 4.7529 7.2239 -3.3697 13 1 4.0204 6.9596 -4.1180 14 6 5.6815 8.2088 -3.6315 15 7 5.6762 8.8255 -4.7931 16 14 6.9481 8.6664 -2.3369 17 1 8.1592 7.8249 -2.5102 18 1 7.3141 10.0977 -2.4867 19 1 6.3775 8.4403 -0.9847 20 6 3.5020 4.9787 -0.6548 21 6 2.2582 4.0841 -0.6261 22 6 3.3385 1.2640 0.7104 23 6 4.2169 0.2232 0.4736 24 6 5.4371 0.1874 1.1220 25 6 5.7754 1.1877 2.0142 26 6 4.8948 2.2258 2.2550 27 6 3.6764 2.2639 1.6033 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.9191 2.6730 -3.6835 32 1 1.8524 4.0840 -3.4563 33 1 4.7969 3.8695 -2.6749 34 1 4.1083 4.8849 -3.9652 35 1 4.6055 7.2430 -1.2408 36 1 5.7185 6.0186 -1.8968 37 1 6.3292 9.5187 -4.9772 38 1 3.3761 5.7992 0.0515 39 1 4.3783 4.3921 -0.3791 40 1 1.3681 4.6888 -0.7997 41 1 2.1851 3.5894 0.3425 42 1 3.9509 -0.5606 -0.2204 43 1 6.1252 -0.6235 0.9336 44 1 6.7276 1.1583 2.5227 45 1 5.1592 3.0075 2.9517 46 1 2.9887 3.0751 1.7911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602206675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:55 Heat of formation + Delta-G solvation = -49.256109 kcal Electronic energy + Delta-G solvation = -27715.949199 eV Core-core repulsion = 23991.467662 eV Total energy + Delta-G solvation = -3724.481536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.82075 -40.01346 -39.24105 -38.16650 -36.07590 -34.45824 -33.41552 -32.17634 -31.73220 -30.62583 -28.70067 -27.53468 -26.67342 -24.65114 -23.74595 -23.41979 -22.88237 -21.84516 -20.06778 -18.98807 -18.71606 -18.12778 -17.81779 -16.92033 -16.80489 -16.45190 -16.13136 -16.02906 -15.69063 -15.58470 -15.52481 -15.26022 -15.11961 -14.50029 -14.43896 -14.24753 -14.17935 -13.78049 -13.54864 -13.31607 -13.21644 -12.88731 -12.51356 -12.49900 -12.44825 -12.24715 -12.11939 -11.99488 -11.82330 -11.75805 -11.63592 -11.40347 -10.78550 -10.53594 -9.87427 -9.82633 -9.71973 -9.08336 -8.27077 -6.30799 0.25705 0.46332 1.36357 1.37190 1.41518 1.47954 1.75477 2.35363 2.59347 2.88423 3.04184 3.13829 3.38117 3.58599 3.72718 3.91293 4.00770 4.07412 4.09542 4.17099 4.19936 4.28326 4.39069 4.44208 4.46492 4.51677 4.57882 4.63315 4.70752 4.79539 4.79938 4.82519 4.92139 4.97232 4.99772 5.09580 5.10732 5.35268 5.48984 5.50900 5.53186 5.58470 5.89254 5.95606 6.04001 6.24202 6.33424 6.62385 6.75852 6.99418 7.32899 8.89377 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.003917 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.690139 B = 7145.975728 C = 8265.756439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.376 6.376 3 C 0.125 3.875 4 H 0.123 0.877 5 C 0.493 3.507 6 O -0.571 6.571 7 N -0.603 5.603 8 C 0.126 3.874 9 C 0.060 3.940 10 N -0.535 5.535 11 C 0.173 3.827 12 C -0.517 4.517 13 H 0.039 0.961 14 C 0.008 3.992 15 N -0.948 5.948 16 Si 0.946 3.054 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.241 1.241 20 C 0.036 3.964 21 C 0.108 3.892 22 C -0.104 4.104 23 C -0.108 4.108 24 C -0.133 4.133 25 C -0.116 4.116 26 C -0.122 4.122 27 C -0.107 4.107 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.016 0.984 34 H 0.071 0.929 35 H 0.041 0.959 36 H -0.018 1.018 37 H 0.266 0.734 38 H 0.104 0.896 39 H 0.030 0.970 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.135 0.865 44 H 0.145 0.855 45 H 0.153 0.847 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.794 -15.127 20.010 25.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.294 6.294 3 C 0.064 3.936 4 H 0.140 0.860 5 C 0.281 3.719 6 O -0.450 6.450 7 N -0.337 5.337 8 C 0.003 3.997 9 C -0.069 4.069 10 N -0.260 5.260 11 C 0.047 3.953 12 C -0.555 4.555 13 H 0.057 0.943 14 C -0.189 4.189 15 N -0.589 5.589 16 Si 0.769 3.231 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.165 1.165 20 C -0.093 4.093 21 C -0.014 4.014 22 C -0.105 4.105 23 C -0.126 4.126 24 C -0.150 4.150 25 C -0.134 4.134 26 C -0.139 4.139 27 C -0.125 4.125 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.034 0.966 34 H 0.089 0.911 35 H 0.059 0.941 36 H -0.001 1.001 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.048 0.952 40 H 0.111 0.889 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.153 0.847 44 H 0.163 0.837 45 H 0.170 0.830 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.057 -15.377 19.316 25.678 hybrid contribution 1.326 0.177 -0.501 1.429 sum -5.731 -15.199 18.815 24.857 Atomic orbital electron populations 1.23114 0.78841 1.04618 1.00944 1.88000 1.21943 1.25048 1.94365 1.20810 0.95003 0.87488 0.90342 0.85966 1.21736 0.76059 0.81693 0.92375 1.90660 1.51999 1.53778 1.48590 1.48314 1.68885 1.06030 1.10508 1.21586 0.97389 0.97085 0.83663 1.22196 0.95296 0.91525 0.97883 1.61817 1.45474 1.13131 1.05575 1.19939 0.88015 0.90886 0.96505 1.21267 1.15110 1.19039 1.00099 0.94266 1.25842 0.99706 0.95836 0.97555 1.70054 1.37779 1.26385 1.24694 0.85736 0.79122 0.77521 0.80679 1.19940 1.20838 1.16457 1.22585 0.97120 0.98546 0.90999 1.22279 0.98900 0.89394 0.90784 1.19405 0.94206 0.97568 0.99291 1.21063 0.94352 0.97975 0.99204 1.21399 0.96266 1.00114 0.97267 1.21577 1.00484 0.93966 0.97348 1.21491 0.93490 0.98979 0.99971 1.21325 0.98290 0.97717 0.95122 0.90939 0.94675 0.87779 0.90259 0.90325 0.96622 0.91092 0.94075 1.00079 0.92501 0.87746 0.95173 0.88909 0.86678 0.87431 0.84676 0.83674 0.82968 0.82926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.81 113.37 1.23 1.57 16 2 O -0.38 -9.20 9.39 -130.66 -1.23 -10.43 16 3 C 0.12 2.81 2.01 29.10 0.06 2.86 16 4 H 0.12 1.84 6.18 -2.39 -0.01 1.83 16 5 C 0.49 14.73 6.86 87.66 0.60 15.34 16 6 O -0.57 -21.88 16.09 15.28 0.25 -21.64 16 7 N -0.60 -17.14 3.01 -817.95 -2.46 -19.61 16 8 C 0.13 4.19 6.58 86.35 0.57 4.76 16 9 C 0.06 2.33 5.46 86.38 0.47 2.80 16 10 N -0.54 -20.51 4.62 -899.80 -4.16 -24.67 16 11 C 0.17 7.86 3.79 85.56 0.32 8.19 16 12 C -0.52 -28.99 8.96 25.60 0.23 -28.77 16 13 H 0.04 2.47 7.37 -2.91 -0.02 2.44 16 14 C 0.01 0.45 5.47 84.65 0.46 0.91 16 15 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 16 Si 0.95 42.72 27.47 68.60 1.88 44.60 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 20 C 0.04 0.99 5.62 86.38 0.49 1.47 16 21 C 0.11 2.35 6.21 86.35 0.54 2.88 16 22 C -0.10 -2.31 4.85 -19.87 -0.10 -2.41 16 23 C -0.11 -2.67 9.33 22.27 0.21 -2.46 16 24 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 25 C -0.12 -1.98 10.05 22.27 0.22 -1.75 16 26 C -0.12 -1.92 10.05 22.27 0.22 -1.69 16 27 C -0.11 -1.81 8.81 22.27 0.20 -1.61 16 28 H 0.07 0.79 8.08 -2.39 -0.02 0.78 16 29 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 2.79 7.10 -2.39 -0.02 2.77 16 32 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 34 H 0.07 3.17 6.67 -2.39 -0.02 3.16 16 35 H 0.04 1.79 7.03 -2.39 -0.02 1.77 16 36 H -0.02 -0.85 7.55 -2.39 -0.02 -0.87 16 37 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.10 2.44 7.99 -2.39 -0.02 2.42 16 39 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.12 1.67 2.91 -2.38 -0.01 1.67 16 42 H 0.11 3.01 7.87 -2.91 -0.02 2.99 16 43 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 44 H 0.15 1.75 8.06 -2.92 -0.02 1.72 16 45 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 46 H 0.15 1.63 6.26 -2.91 -0.02 1.62 16 Total: -1.00 -75.76 366.54 1.44 -74.31 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.92 Total: 16.11 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 5.94 Total: -0.39 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -6.32 Total: -102.57 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.98 Total: -32.06 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.88 Total: 44.60 kcal Total: -75.76 1.44 -74.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.058 kcal (2) G-P(sol) polarization free energy of solvation -75.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds