Wall clock time and date at job start Tue Mar 31 2020 12:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99930 * 2 1 4 4 C 1.38747 * 120.05586 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94590 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05159 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.11362 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05438 * 359.97438 * 7 6 5 9 9 C 1.50708 * 120.02715 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47325 * 265.02667 * 9 8 7 11 11 O 1.21285 * 120.00046 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99979 * 180.02562 * 10 9 8 13 13 C 1.47084 * 120.88329 * 359.71805 * 12 10 9 14 14 C 1.53694 * 108.27510 * 128.75466 * 13 12 10 15 15 N 1.46904 * 109.25432 * 54.08913 * 14 13 12 16 16 C 1.46897 * 110.99589 * 172.60495 * 15 14 13 17 17 C 1.50703 * 109.47478 * 294.29719 * 16 15 14 18 18 H 1.08001 * 119.99355 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00261 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99953 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00205 * 359.97438 * 19 17 16 22 22 H 1.48492 * 109.47137 * 90.00289 * 21 19 17 23 23 H 1.48498 * 109.47393 * 210.00512 * 21 19 17 24 24 H 1.48500 * 109.46951 * 330.00630 * 21 19 17 25 25 C 1.46906 * 111.26593 * 296.74727 * 15 14 13 26 26 C 1.47082 * 120.87917 * 180.02562 * 12 10 9 27 27 H 1.08995 * 109.47056 * 60.00501 * 1 2 3 28 28 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47294 * 300.00489 * 1 2 3 30 30 H 1.08000 * 120.03046 * 0.02562 * 4 3 2 31 31 H 1.07993 * 119.97844 * 179.72247 * 5 4 3 32 32 H 1.08004 * 119.94567 * 179.97438 * 6 5 4 33 33 H 1.08001 * 119.97502 * 180.02562 * 7 6 5 34 34 H 1.08995 * 109.47041 * 25.02760 * 9 8 7 35 35 H 1.08999 * 109.47067 * 145.02382 * 9 8 7 36 36 H 1.08998 * 109.62358 * 248.53015 * 13 12 10 37 37 H 1.09002 * 109.62606 * 9.10505 * 13 12 10 38 38 H 1.08992 * 109.64935 * 294.08071 * 14 13 12 39 39 H 1.08997 * 109.44169 * 173.96030 * 14 13 12 40 40 H 1.09004 * 109.47212 * 54.29987 * 16 15 14 41 41 H 1.09007 * 109.46999 * 174.29741 * 16 15 14 42 42 H 0.96995 * 119.99963 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.49241 * 303.15331 * 25 15 14 44 44 H 1.08990 * 109.49146 * 183.06710 * 25 15 14 45 45 H 1.08993 * 109.62900 * 350.89298 * 26 12 10 46 46 H 1.08999 * 109.62920 * 111.47429 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 4.0560 2.5171 0.0000 8 6 3.4311 1.2848 0.0005 9 6 4.2537 0.0221 0.0005 10 6 4.4242 -0.4664 -1.4148 11 8 3.9263 0.1498 -2.3332 12 7 5.1291 -1.5887 -1.6601 13 6 5.7454 -2.3483 -0.5616 14 6 5.3259 -3.8205 -0.6990 15 7 5.6622 -4.2962 -2.0475 16 6 5.4397 -5.7434 -2.1658 17 6 6.4045 -6.4751 -1.2686 18 1 7.1119 -5.9203 -0.6701 19 6 6.3841 -7.8525 -1.2119 20 7 7.2258 -8.4909 -0.4286 21 14 5.1600 -8.8119 -2.2467 22 1 5.7644 -9.1230 -3.5668 23 1 4.8092 -10.0769 -1.5524 24 1 3.9333 -7.9984 -2.4433 25 6 4.9103 -3.5624 -3.0743 26 6 5.3081 -2.0826 -3.0339 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2128 2.3203 -0.0005 31 1 1.3341 4.5113 -0.0060 32 1 3.7923 4.6380 -0.0014 33 1 5.1344 2.5751 0.0008 34 1 5.2324 0.2260 0.4349 35 1 3.7467 -0.7419 0.5900 36 1 6.8305 -2.2662 -0.6235 37 1 5.3995 -1.9553 0.3944 38 1 4.2518 -3.9120 -0.5382 39 1 5.8567 -4.4195 0.0409 40 1 4.4176 -5.9793 -1.8694 41 1 5.5988 -6.0522 -3.1990 42 1 7.2112 -9.4599 -0.3884 43 1 3.8420 -3.6575 -2.8804 44 1 5.1402 -3.9739 -4.0571 45 1 4.6731 -1.5139 -3.7130 46 1 6.3521 -1.9756 -3.3283 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604473427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:16 Heat of formation + Delta-G solvation = -53.124698 kcal Electronic energy + Delta-G solvation = -26853.745245 eV Core-core repulsion = 23129.095954 eV Total energy + Delta-G solvation = -3724.649291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.57403 -40.73051 -38.99258 -38.23128 -35.94565 -34.47783 -33.95583 -32.14971 -31.03568 -30.54299 -28.99994 -28.02924 -26.96254 -24.70025 -23.66167 -23.05310 -22.76317 -21.76161 -19.89897 -18.93751 -18.89267 -18.25714 -17.35643 -17.07157 -16.65901 -16.49953 -16.32953 -16.24533 -16.04134 -15.67999 -15.31943 -15.17625 -14.75322 -14.67645 -14.46863 -14.25457 -14.05750 -13.63071 -13.39898 -13.16869 -13.01135 -12.88528 -12.85672 -12.52583 -12.36786 -12.22669 -12.19909 -12.00831 -11.93789 -11.85016 -11.72013 -11.41421 -10.88343 -10.77431 -9.78476 -9.74815 -9.07964 -9.07103 -8.27693 -6.30529 0.36543 0.53273 1.34975 1.36071 1.45898 1.64091 2.00505 2.34202 2.39902 2.84568 3.04677 3.15233 3.64358 3.71261 3.88098 4.00045 4.04011 4.10386 4.21822 4.24264 4.29074 4.34158 4.34667 4.41746 4.44139 4.51290 4.58978 4.64547 4.67506 4.72801 4.80180 4.82902 4.85701 4.92597 5.04221 5.09960 5.13561 5.39470 5.46628 5.50274 5.52819 5.61326 5.89912 5.92960 6.28354 6.41666 6.47934 6.60082 6.75583 7.17012 7.33077 8.88220 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022611 B = 0.002809 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.025007 B = 9967.151221 C =10355.679673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.338 6.338 3 C 0.119 3.881 4 C -0.219 4.219 5 C -0.086 4.086 6 C -0.163 4.163 7 C -0.080 4.080 8 C -0.120 4.120 9 C -0.088 4.088 10 C 0.520 3.480 11 O -0.579 6.579 12 N -0.613 5.613 13 C 0.120 3.880 14 C 0.050 3.950 15 N -0.538 5.538 16 C 0.172 3.828 17 C -0.513 4.513 18 H 0.047 0.953 19 C 0.012 3.988 20 N -0.944 5.944 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.256 1.256 25 C 0.043 3.957 26 C 0.125 3.875 27 H 0.057 0.943 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.021 0.979 39 H 0.080 0.920 40 H -0.017 1.017 41 H 0.029 0.971 42 H 0.267 0.733 43 H 0.020 0.980 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.874 23.787 2.428 26.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.252 6.252 3 C 0.074 3.926 4 C -0.238 4.238 5 C -0.104 4.104 6 C -0.181 4.181 7 C -0.098 4.098 8 C -0.121 4.121 9 C -0.127 4.127 10 C 0.310 3.690 11 O -0.459 6.459 12 N -0.346 5.346 13 C -0.003 4.003 14 C -0.079 4.079 15 N -0.263 5.263 16 C 0.045 3.955 17 C -0.551 4.551 18 H 0.065 0.935 19 C -0.186 4.186 20 N -0.585 5.585 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.208 1.208 24 H -0.181 1.181 25 C -0.086 4.086 26 C 0.002 3.998 27 H 0.076 0.924 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.161 0.839 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.039 0.961 39 H 0.098 0.902 40 H 0.001 0.999 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.516 23.823 1.923 26.530 hybrid contribution -1.362 -1.285 -0.281 1.894 sum -12.878 22.538 1.642 26.010 Atomic orbital electron populations 1.23255 0.76875 1.05014 1.02119 1.86041 1.23142 1.27410 1.88611 1.19111 0.92242 0.84870 0.96400 1.21469 1.00874 0.92284 1.09139 1.21299 0.95122 0.97473 0.96480 1.21360 0.94202 0.99004 1.03532 1.21155 1.00907 0.90911 0.96818 1.18913 0.90602 0.95380 1.07248 1.20529 1.02718 0.96273 0.93172 1.21003 0.76502 0.79470 0.92033 1.90641 1.49853 1.57584 1.47788 1.48313 1.52509 1.25329 1.08465 1.22087 0.98951 0.89135 0.90078 1.22434 0.97890 0.95910 0.91657 1.61828 1.56382 1.04520 1.03525 1.19940 0.93879 0.85217 0.96496 1.21212 1.17893 0.91422 1.24572 0.93455 1.25749 0.97450 0.98803 0.96570 1.70027 1.38992 1.08869 1.40605 0.85801 0.80116 0.78239 0.79284 1.19072 1.20803 1.18058 1.22492 0.94905 0.94277 0.96948 1.21605 1.02212 0.92482 0.83500 0.92403 0.87342 0.90971 0.83937 0.83276 0.83489 0.83892 0.85236 0.87398 0.89720 0.86661 0.96051 0.90207 0.99923 0.95298 0.92431 0.96185 0.89174 0.89489 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -8.50 9.63 -92.41 -0.89 -9.39 16 3 C 0.12 2.92 6.66 22.50 0.15 3.07 16 4 C -0.22 -4.32 9.04 22.36 0.20 -4.12 16 5 C -0.09 -1.44 10.04 22.25 0.22 -1.22 16 6 C -0.16 -2.78 10.04 22.28 0.22 -2.56 16 7 C -0.08 -1.59 9.68 22.25 0.22 -1.38 16 8 C -0.12 -2.88 4.39 -19.77 -0.09 -2.96 16 9 C -0.09 -1.97 3.92 29.10 0.11 -1.85 16 10 C 0.52 15.31 7.70 87.66 0.68 15.99 16 11 O -0.58 -21.11 15.49 -3.05 -0.05 -21.16 16 12 N -0.61 -17.73 3.00 -816.96 -2.45 -20.18 16 13 C 0.12 3.21 6.53 86.50 0.57 3.77 16 14 C 0.05 1.78 5.47 86.54 0.47 2.26 16 15 N -0.54 -21.55 4.62 -898.78 -4.15 -25.70 16 16 C 0.17 8.08 3.79 85.56 0.32 8.41 16 17 C -0.51 -28.67 8.96 25.60 0.23 -28.44 16 18 H 0.05 2.90 7.37 -2.91 -0.02 2.88 16 19 C 0.01 0.68 5.47 84.65 0.46 1.15 16 20 N -0.94 -57.69 13.96 21.45 0.30 -57.39 16 21 Si 0.94 43.52 27.47 68.60 1.88 45.40 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.26 -11.26 6.54 99.48 0.65 -10.61 16 25 C 0.04 1.44 5.62 86.40 0.49 1.92 16 26 C 0.12 3.75 6.60 86.36 0.57 4.32 16 27 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 28 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 0.88 7.66 -2.39 -0.02 0.87 16 30 H 0.14 2.14 6.30 -2.91 -0.02 2.12 16 31 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 34 H 0.13 2.08 7.90 -2.39 -0.02 2.06 16 35 H 0.11 2.36 7.22 -2.39 -0.02 2.34 16 36 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.12 2.32 6.02 -2.39 -0.01 2.30 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 3.21 6.67 -2.39 -0.02 3.19 16 40 H -0.02 -0.81 7.18 -2.38 -0.02 -0.83 16 41 H 0.03 1.34 7.40 -2.38 -0.02 1.32 16 42 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.09 2.83 7.99 -2.39 -0.02 2.81 16 45 H 0.09 2.65 7.06 -2.39 -0.02 2.63 16 46 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -74.06 368.27 1.49 -72.57 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.91 Total: 16.02 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 5.94 Total: -0.17 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -6.31 Total: -103.27 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.94 Total: -30.55 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.88 Total: 45.40 kcal Total: -74.06 1.49 -72.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604473427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.443 kcal (2) G-P(sol) polarization free energy of solvation -74.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds