Wall clock time and date at job start Tue Mar 31 2020 12:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99576 * 2 1 4 4 C 1.53008 * 109.46966 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46952 * 65.00090 * 4 3 2 6 6 C 1.46504 * 120.00093 * 270.00026 * 5 4 3 7 7 C 1.50695 * 109.47169 * 270.00329 * 6 5 4 8 8 H 1.08001 * 120.00285 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00266 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99985 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00348 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46821 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47420 * 119.99898 * 11 9 7 14 14 H 1.48506 * 109.46964 * 239.99860 * 11 9 7 15 15 C 1.34774 * 120.00031 * 90.00047 * 5 4 3 16 16 O 1.21595 * 120.00086 * 179.97438 * 15 5 4 17 17 N 1.34777 * 120.00023 * 0.02562 * 15 5 4 18 18 C 1.39943 * 119.99828 * 174.83453 * 17 15 5 19 19 C 1.38868 * 120.07027 * 326.49614 * 18 17 15 20 20 C 1.38118 * 119.92242 * 179.74754 * 19 18 17 21 21 C 1.38274 * 120.07491 * 0.55420 * 20 19 18 22 22 C 1.50707 * 119.93170 * 179.72462 * 21 20 19 23 23 C 1.52996 * 117.49780 * 8.71681 * 22 21 20 24 24 C 1.53000 * 117.49443 * 300.05982 * 22 21 20 25 25 C 1.38278 * 120.13851 * 359.69666 * 21 20 19 26 26 C 1.38109 * 120.07126 * 0.02710 * 25 21 20 27 27 H 1.08996 * 109.47110 * 60.00046 * 1 2 3 28 28 H 1.09002 * 109.46667 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47263 * 299.99603 * 1 2 3 30 30 H 1.08999 * 109.47136 * 60.00227 * 3 2 1 31 31 H 1.08997 * 109.47549 * 299.99930 * 3 2 1 32 32 H 1.09000 * 109.46678 * 305.00086 * 4 3 2 33 33 H 1.08991 * 109.47156 * 185.00321 * 4 3 2 34 34 H 1.08997 * 109.46885 * 30.00081 * 6 5 4 35 35 H 1.08996 * 109.47211 * 150.00043 * 6 5 4 36 36 H 0.96993 * 120.00364 * 180.02562 * 10 9 7 37 37 H 0.96998 * 119.99573 * 354.55462 * 17 15 5 38 38 H 1.07995 * 120.03296 * 0.02562 * 19 18 17 39 39 H 1.08007 * 119.95961 * 180.27263 * 20 19 18 40 40 H 1.08995 * 115.55350 * 154.39719 * 22 21 20 41 41 H 1.09004 * 117.49752 * 0.02562 * 23 22 21 42 42 H 1.09003 * 117.49808 * 145.02377 * 23 22 21 43 43 H 1.08998 * 117.49824 * 214.97632 * 24 22 21 44 44 H 1.09005 * 117.50369 * 359.97438 * 24 22 21 45 45 H 1.08002 * 119.96550 * 180.02562 * 25 21 20 46 46 H 1.08005 * 120.03826 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1052 -0.8920 -1.3428 7 6 5.5010 -1.2977 -0.9450 8 1 6.2195 -0.5459 -0.6537 9 6 5.8604 -2.6288 -0.9518 10 7 4.9849 -3.5445 -1.3050 11 14 7.5903 -3.1317 -0.4580 12 1 8.3760 -1.9218 -0.1060 13 1 7.5259 -4.0395 0.7156 14 1 8.2442 -3.8338 -1.5915 15 6 4.2614 1.3339 -2.3218 16 8 4.6272 0.8192 -3.3609 17 7 4.1427 2.6738 -2.2388 18 6 4.5418 3.4794 -3.3113 19 6 5.6179 3.1008 -4.1032 20 6 6.0059 3.8955 -5.1641 21 6 5.3314 5.0726 -5.4311 22 6 5.7614 5.9404 -6.5858 23 6 6.8100 5.3724 -7.5442 24 6 7.1907 6.4860 -6.5654 25 6 4.2627 5.4550 -4.6412 26 6 3.8662 4.6620 -3.5824 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5683 0.8409 33 1 3.9785 2.1765 0.0890 34 1 3.3853 -1.3628 -0.6735 35 1 3.9120 -1.2113 -2.3669 36 1 5.2376 -4.4809 -1.3095 37 1 3.7769 3.0795 -1.4372 38 1 6.1479 2.1837 -3.8924 39 1 6.8400 3.5993 -5.7831 40 1 4.9854 6.5780 -7.0092 41 1 7.1886 4.3708 -7.3398 42 1 6.7240 5.6365 -8.5982 43 1 7.3550 7.4822 -6.9759 44 1 7.8199 6.2176 -5.7166 45 1 3.7376 6.3748 -4.8526 46 1 3.0311 4.9609 -2.9660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611330584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:21 Heat of formation + Delta-G solvation = -10.949903 kcal Electronic energy + Delta-G solvation = -26582.844441 eV Core-core repulsion = 22860.023986 eV Total energy + Delta-G solvation = -3722.820454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33807 -39.07046 -37.67035 -36.77249 -34.89379 -34.08759 -32.53423 -30.76147 -29.63508 -29.28043 -26.89746 -25.96213 -23.85039 -23.13137 -22.77012 -22.38789 -22.12416 -20.25850 -19.33098 -17.99379 -17.12096 -16.49709 -16.33025 -16.03339 -15.64408 -15.21756 -14.90557 -14.81267 -14.59915 -14.24326 -13.95859 -13.75909 -13.39792 -13.17144 -12.84668 -12.74851 -12.31089 -12.13029 -11.95807 -11.71147 -11.70121 -11.35161 -11.23684 -11.00307 -10.92532 -10.92139 -10.82548 -10.45625 -10.41279 -10.09873 -9.71572 -9.56651 -9.47471 -9.24456 -8.72262 -8.34872 -7.83191 -7.49564 -5.95850 -3.99941 1.44706 1.59855 3.19701 3.34110 3.41507 3.45864 3.54683 3.85226 4.00197 4.19316 4.35251 4.51753 4.53666 4.77384 4.89440 5.00782 5.12535 5.20937 5.23137 5.33264 5.37869 5.41478 5.43691 5.48859 5.51315 5.53830 5.55617 5.68244 5.75116 5.82936 5.84577 5.97519 6.01095 6.14634 6.19386 6.48486 6.51069 6.75126 6.84427 6.93766 7.32117 7.36755 7.55233 7.61222 7.73945 8.02589 8.33121 8.61643 9.00438 9.26195 9.64239 11.12018 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.003644 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.958198 B = 7682.124621 C = 9710.159686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.042 3.958 4 C 0.110 3.890 5 N -0.598 5.598 6 C 0.264 3.736 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.695 3.305 16 O -0.565 6.565 17 N -0.699 5.699 18 C 0.180 3.820 19 C -0.116 4.116 20 C -0.099 4.099 21 C -0.084 4.084 22 C -0.109 4.109 23 C -0.180 4.180 24 C -0.173 4.173 25 C -0.095 4.095 26 C -0.156 4.156 27 H 0.035 0.965 28 H 0.085 0.915 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.040 0.960 36 H 0.261 0.739 37 H 0.398 0.602 38 H 0.141 0.859 39 H 0.122 0.878 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.120 0.880 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.602 19.937 -2.402 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.036 4.036 4 C -0.015 4.015 5 N -0.332 5.332 6 C 0.145 3.855 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.397 3.603 16 O -0.441 6.441 17 N -0.348 5.348 18 C 0.084 3.916 19 C -0.137 4.137 20 C -0.117 4.117 21 C -0.085 4.085 22 C -0.127 4.127 23 C -0.217 4.217 24 C -0.210 4.210 25 C -0.113 4.113 26 C -0.177 4.177 27 H 0.054 0.946 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.235 0.765 38 H 0.159 0.841 39 H 0.140 0.860 40 H 0.127 0.873 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.138 0.862 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.245 19.036 -3.102 19.749 hybrid contribution 0.394 0.075 0.758 0.857 sum -3.851 19.111 -2.345 19.636 Atomic orbital electron populations 1.22708 0.81953 1.02690 0.99109 1.88108 1.18783 1.26651 1.95123 1.23136 0.95312 0.85705 0.99488 1.21478 0.91204 0.98672 0.90114 1.47559 1.67594 1.09562 1.08475 1.19279 0.96719 0.70515 0.99015 1.21522 0.97520 0.92208 1.45195 0.92603 1.24908 0.97328 0.96409 0.95418 1.69954 1.34195 1.00915 1.48154 0.86486 0.84650 0.78437 0.78057 1.19916 1.21046 1.20974 1.15997 0.79336 0.80041 0.84880 1.90912 1.52506 1.71923 1.28751 1.43048 1.67947 1.05737 1.18055 1.17575 0.93304 0.90911 0.89844 1.21308 0.95688 1.00779 0.95894 1.20899 0.99877 0.93768 0.97175 1.18995 0.97442 0.95422 0.96673 1.20947 0.92557 1.01671 0.97526 1.23084 1.03381 0.99013 0.96197 1.23030 0.97404 0.98368 1.02221 1.20572 0.96808 0.99187 0.94757 1.20764 1.00702 0.96226 1.00044 0.94602 0.89675 0.94650 0.92966 0.93842 0.88452 0.90703 0.93439 0.94149 0.92898 0.76544 0.84145 0.86026 0.87339 0.88203 0.88679 0.88791 0.88598 0.86183 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.26 9.53 -35.23 -0.34 -6.60 16 3 C 0.04 0.58 6.28 37.16 0.23 0.81 16 4 C 0.11 1.75 5.53 -4.04 -0.02 1.73 16 5 N -0.60 -12.76 2.42 -180.81 -0.44 -13.20 16 6 C 0.26 7.04 4.98 -5.19 -0.03 7.01 16 7 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 11 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 15 C 0.70 14.90 8.02 -86.92 -0.70 14.20 16 16 O -0.57 -14.59 13.61 5.28 0.07 -14.52 16 17 N -0.70 -11.37 5.17 -14.22 -0.07 -11.44 16 18 C 0.18 2.86 6.28 -83.69 -0.53 2.34 16 19 C -0.12 -1.99 8.66 -39.39 -0.34 -2.33 16 20 C -0.10 -1.42 9.29 -39.61 -0.37 -1.78 16 21 C -0.08 -1.05 5.61 -104.59 -0.59 -1.64 16 22 C -0.11 -1.09 6.04 -91.77 -0.55 -1.64 16 23 C -0.18 -1.66 9.86 -26.70 -0.26 -1.93 16 24 C -0.17 -1.53 10.17 -26.69 -0.27 -1.80 16 25 C -0.09 -1.12 9.73 -39.61 -0.39 -1.50 16 26 C -0.16 -2.00 9.96 -39.40 -0.39 -2.39 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 1.64 8.07 -51.93 -0.42 1.23 16 33 H 0.07 0.92 6.45 -51.93 -0.33 0.58 16 34 H 0.05 1.31 7.11 -51.93 -0.37 0.95 16 35 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.40 5.04 6.63 -40.82 -0.27 4.77 16 38 H 0.14 2.83 6.42 -52.49 -0.34 2.49 16 39 H 0.12 1.57 6.01 -52.48 -0.32 1.25 16 40 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 0.98 6.17 -51.93 -0.32 0.66 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 46 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -34.91 380.93 -9.77 -44.68 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.95 Total: 5.57 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -3.51 Total: -1.13 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.23 Total: -50.90 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.26 Total: -21.12 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.91 -9.77 -44.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611330584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.733 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds