Wall clock time and date at job start Tue Mar 31 2020 12:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34774 * 120.00091 * 2 1 4 4 O 1.21283 * 120.00143 * 4.99903 * 3 2 1 5 5 C 1.50701 * 120.00029 * 184.99358 * 3 2 1 6 6 N 1.46897 * 110.01683 * 324.25110 * 5 3 2 7 7 C 1.46898 * 111.00254 * 298.14668 * 6 5 3 8 8 C 1.50702 * 109.47238 * 184.71167 * 7 6 5 9 9 C 1.38302 * 119.92755 * 270.29648 * 8 7 6 10 10 C 1.38102 * 120.06275 * 180.29589 * 9 8 7 11 11 C 1.38873 * 119.93360 * 359.42975 * 10 9 8 12 12 O 1.35754 * 120.06792 * 180.29572 * 11 10 9 13 13 C 1.34822 * 117.00302 * 354.77283 * 12 11 10 14 14 H 1.07999 * 119.99860 * 5.09404 * 13 12 11 15 15 C 1.38650 * 120.00221 * 185.09314 * 13 12 11 16 16 N 1.31553 * 120.00044 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00164 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46978 * 59.99862 * 17 15 13 19 19 H 1.48499 * 109.47276 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46939 * 300.00193 * 17 15 13 21 21 C 1.38880 * 119.86055 * 0.27120 * 11 10 9 22 22 C 1.38092 * 119.93412 * 0.02562 * 21 11 10 23 23 C 1.54267 * 110.02850 * 85.64480 * 5 3 2 24 24 C 1.54968 * 104.16022 * 95.75612 * 23 5 3 25 25 C 1.54885 * 102.77841 * 37.88255 * 24 23 5 26 26 C 1.53877 * 110.03027 * 202.86028 * 5 3 2 27 27 H 1.09007 * 109.46826 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47146 * 300.00161 * 1 2 3 29 29 H 1.09002 * 109.46780 * 60.00138 * 1 2 3 30 30 H 0.97006 * 120.00200 * 179.97438 * 2 1 3 31 31 H 1.00897 * 110.99821 * 62.10355 * 6 5 3 32 32 H 1.08998 * 109.47415 * 64.70971 * 7 6 5 33 33 H 1.09005 * 109.46686 * 304.70748 * 7 6 5 34 34 H 1.07999 * 119.97111 * 0.02562 * 9 8 7 35 35 H 1.08000 * 120.03183 * 179.69674 * 10 9 8 36 36 H 0.97005 * 120.00080 * 180.02562 * 16 15 13 37 37 H 1.08004 * 120.02950 * 180.02562 * 21 11 10 38 38 H 1.07995 * 119.97085 * 179.97438 * 22 21 11 39 39 H 1.09003 * 110.48565 * 214.39783 * 23 5 3 40 40 H 1.08997 * 110.48954 * 337.04001 * 23 5 3 41 41 H 1.08997 * 110.71765 * 279.57010 * 24 23 5 42 42 H 1.09004 * 110.92417 * 156.29575 * 24 23 5 43 43 H 1.08996 * 110.49095 * 203.40512 * 25 24 23 44 44 H 1.09004 * 110.48589 * 80.76204 * 25 24 23 45 45 H 1.08993 * 110.03586 * 359.95180 * 26 5 3 46 46 H 1.09002 * 110.03179 * 121.38601 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2155 0.0915 5 6 3.6416 1.1696 -0.1136 6 7 4.2020 0.0162 0.6031 7 6 3.8813 0.0798 2.0352 8 6 4.5672 -1.0532 2.7543 9 6 3.9257 -2.2703 2.8946 10 6 4.5492 -3.3085 3.5584 11 6 5.8263 -3.1331 4.0750 12 8 6.4441 -4.1537 4.7227 13 6 5.7237 -5.2751 4.9258 14 1 4.7322 -5.3631 4.5071 15 6 6.2559 -6.3152 5.6723 16 7 7.4640 -6.2082 6.1820 17 14 5.2581 -7.8693 5.9531 18 1 4.9367 -8.4943 4.6450 19 1 6.0462 -8.8217 6.7759 20 1 3.9983 -7.5274 6.6612 21 6 6.4702 -1.9115 3.9270 22 6 5.8391 -0.8753 3.2676 23 6 4.0593 1.1234 -1.5979 24 6 4.3010 2.6082 -1.9701 25 6 4.9571 3.1802 -0.6890 26 6 4.2117 2.4769 0.4641 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.9501 -0.8401 0.0004 31 1 3.8816 -0.8510 0.1989 32 1 2.8029 -0.0041 2.1702 33 1 4.2257 1.0303 2.4428 34 1 2.9344 -2.4078 2.4885 35 1 4.0458 -4.2573 3.6719 36 1 7.8364 -6.9361 6.7040 37 1 7.4636 -1.7722 4.3273 38 1 6.3391 0.0750 3.1526 39 1 4.9761 0.5461 -1.7185 40 1 3.2593 0.7020 -2.2065 41 1 3.3572 3.1120 -2.1787 42 1 4.9775 2.6912 -2.8208 43 1 4.8120 4.2591 -0.6351 44 1 6.0189 2.9353 -0.6623 45 1 3.4015 3.1099 0.8259 46 1 4.9042 2.2555 1.2763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733999281.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:40 Heat of formation + Delta-G solvation = -39.805157 kcal Electronic energy + Delta-G solvation = -26626.301718 eV Core-core repulsion = 22902.230006 eV Total energy + Delta-G solvation = -3724.071712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.86353 -39.06208 -37.64967 -36.76576 -35.17507 -34.05829 -32.31522 -30.29088 -30.15323 -28.97169 -27.61047 -26.61810 -25.48151 -24.01266 -22.15934 -21.98779 -21.02606 -20.26674 -19.49563 -18.08759 -17.87154 -17.00841 -16.39214 -16.03019 -15.37734 -15.13912 -14.87838 -14.72594 -14.54369 -14.23585 -13.97506 -13.65970 -13.58627 -13.51584 -12.95001 -12.73505 -12.59097 -12.58884 -12.24814 -12.01667 -11.66883 -11.61046 -11.34101 -11.29512 -11.19580 -11.13262 -10.79766 -10.73369 -10.68717 -10.56664 -10.45249 -10.28350 -9.40832 -9.36764 -8.86572 -8.51653 -8.20675 -7.22244 -6.48041 -4.07162 2.18978 2.22319 2.39874 2.91524 3.10243 3.11260 3.14397 3.93641 3.98474 4.29537 4.36858 4.55402 4.60794 4.91150 4.98528 5.06695 5.16232 5.20561 5.23190 5.27599 5.31965 5.35038 5.48984 5.49956 5.52088 5.60583 5.66128 5.73405 5.77445 5.84386 5.90278 5.94273 6.01538 6.10585 6.18276 6.23021 6.38734 6.66984 6.77840 6.87798 7.00306 7.11421 7.21093 7.26715 7.36470 7.41218 7.79434 7.94855 7.96629 8.97348 9.67471 10.69830 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020791 B = 0.002702 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.411896 B =10358.701204 C =11227.260313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.738 5.738 3 C 0.492 3.508 4 O -0.536 6.536 5 C 0.097 3.903 6 N -0.661 5.661 7 C 0.108 3.892 8 C -0.183 4.183 9 C -0.065 4.065 10 C -0.235 4.235 11 C 0.157 3.843 12 O -0.177 6.177 13 C -0.393 4.393 14 H 0.091 0.909 15 C 0.040 3.960 16 N -0.862 5.862 17 Si 0.941 3.059 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.194 4.194 22 C -0.050 4.050 23 C -0.106 4.106 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.111 4.111 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.400 0.600 31 H 0.339 0.661 32 H 0.031 0.969 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.271 0.729 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.367 12.602 -14.224 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.391 5.391 3 C 0.277 3.723 4 O -0.411 6.411 5 C 0.002 3.998 6 N -0.294 5.294 7 C -0.020 4.020 8 C -0.185 4.185 9 C -0.084 4.084 10 C -0.254 4.254 11 C 0.103 3.897 12 O -0.080 6.080 13 C -0.469 4.469 14 H 0.109 0.891 15 C -0.165 4.165 16 N -0.497 5.497 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.195 1.195 21 C -0.213 4.213 22 C -0.069 4.069 23 C -0.144 4.144 24 C -0.160 4.160 25 C -0.154 4.154 26 C -0.149 4.149 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.234 0.766 31 H 0.159 0.841 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.143 0.857 36 H 0.081 0.919 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.824 13.471 -13.842 21.235 hybrid contribution -1.435 -1.675 0.168 2.213 sum -10.260 11.796 -13.674 20.770 Atomic orbital electron populations 1.21536 0.79602 1.02334 1.02214 1.45907 1.07909 1.08985 1.76276 1.21863 0.91761 0.83534 0.75184 1.90657 1.70537 1.31443 1.48487 1.21999 0.87097 0.94293 0.96400 1.60835 1.62069 1.03406 1.03044 1.20796 0.96659 0.98148 0.86349 1.19020 0.96793 0.95074 1.07582 1.20543 0.97898 0.92501 0.97478 1.21099 0.97068 1.00452 1.06775 1.19406 0.90830 0.88592 0.90901 1.83981 1.38597 1.20777 1.64636 1.21268 1.00182 0.91384 1.34091 0.89146 1.25286 0.96466 0.99025 0.95681 1.70026 1.14617 1.32960 1.32056 0.85792 0.79008 0.79868 0.78825 1.19502 1.20245 1.19511 1.20227 1.01498 0.91856 1.07713 1.20450 0.93560 0.97332 0.95553 1.22406 1.02238 0.98208 0.91581 1.22474 1.00851 0.94796 0.97920 1.22271 0.99647 0.99542 0.93985 1.22248 1.00503 0.93310 0.98799 0.90575 0.92165 0.92356 0.76586 0.84120 0.95111 0.90340 0.88138 0.85671 0.91920 0.86543 0.87040 0.88927 0.91852 0.91461 0.91161 0.91595 0.91168 0.90122 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.71 59.85 0.64 1.35 16 2 N -0.74 -6.97 5.09 -67.07 -0.34 -7.31 16 3 C 0.49 5.83 5.46 -10.99 -0.06 5.77 16 4 O -0.54 -8.14 15.51 5.55 0.09 -8.05 16 5 C 0.10 1.02 0.80 -131.63 -0.11 0.91 16 6 N -0.66 -7.29 5.82 -101.25 -0.59 -7.88 16 7 C 0.11 1.38 5.13 -4.98 -0.03 1.36 16 8 C -0.18 -2.92 5.44 -104.57 -0.57 -3.49 16 9 C -0.07 -1.11 9.69 -39.61 -0.38 -1.49 16 10 C -0.23 -4.88 9.17 -39.40 -0.36 -5.24 16 11 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 12 O -0.18 -4.97 9.76 0.06 0.00 -4.97 16 13 C -0.39 -10.80 9.49 30.88 0.29 -10.51 16 14 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 15 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 16 N -0.86 -25.02 13.67 55.48 0.76 -24.27 16 17 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 C -0.19 -3.99 9.99 -39.40 -0.39 -4.39 16 22 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 23 C -0.11 -0.96 6.05 -25.03 -0.15 -1.11 16 24 C -0.12 -1.06 6.91 -24.70 -0.17 -1.23 16 25 C -0.12 -1.07 6.83 -25.07 -0.17 -1.24 16 26 C -0.11 -1.20 5.42 -25.61 -0.14 -1.34 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.40 3.12 7.26 -40.82 -0.30 2.82 16 31 H 0.34 3.42 7.37 -39.29 -0.29 3.13 16 32 H 0.03 0.39 6.88 -51.93 -0.36 0.04 16 33 H 0.08 1.01 6.11 -51.93 -0.32 0.69 16 34 H 0.10 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.13 2.61 5.64 -52.49 -0.30 2.32 16 36 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 40 H 0.06 0.54 7.83 -51.93 -0.41 0.13 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 1.00 6.66 -51.93 -0.35 0.65 16 46 H 0.08 0.92 6.36 -51.93 -0.33 0.59 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -31.86 370.51 -8.56 -40.41 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.69 Total: 8.81 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -2.34 Total: -17.46 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: -0.17 Total: -39.46 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.86 -8.56 -40.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733999281.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.607 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds