Wall clock time and date at job start Tue Mar 31 2020 12:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34774 * 120.00091 * 2 1 4 4 O 1.21283 * 120.00143 * 4.99903 * 3 2 1 5 5 C 1.50701 * 120.00029 * 184.99358 * 3 2 1 6 6 N 1.46897 * 110.01683 * 324.25110 * 5 3 2 7 7 C 1.46898 * 111.00254 * 298.14668 * 6 5 3 8 8 C 1.50702 * 109.47238 * 184.71167 * 7 6 5 9 9 C 1.38302 * 119.92755 * 270.29648 * 8 7 6 10 10 C 1.38102 * 120.06275 * 180.29589 * 9 8 7 11 11 C 1.38873 * 119.93360 * 359.42975 * 10 9 8 12 12 O 1.35754 * 120.06792 * 180.29572 * 11 10 9 13 13 C 1.34822 * 117.00302 * 354.77283 * 12 11 10 14 14 H 1.07999 * 119.99860 * 5.09404 * 13 12 11 15 15 C 1.38650 * 120.00221 * 185.09314 * 13 12 11 16 16 N 1.31553 * 120.00044 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00164 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46978 * 59.99862 * 17 15 13 19 19 H 1.48499 * 109.47276 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46939 * 300.00193 * 17 15 13 21 21 C 1.38880 * 119.86055 * 0.27120 * 11 10 9 22 22 C 1.38092 * 119.93412 * 0.02562 * 21 11 10 23 23 C 1.54267 * 110.02850 * 85.64480 * 5 3 2 24 24 C 1.54968 * 104.16022 * 95.75612 * 23 5 3 25 25 C 1.54885 * 102.77841 * 37.88255 * 24 23 5 26 26 C 1.53877 * 110.03027 * 202.86028 * 5 3 2 27 27 H 1.09007 * 109.46826 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47146 * 300.00161 * 1 2 3 29 29 H 1.09002 * 109.46780 * 60.00138 * 1 2 3 30 30 H 0.97006 * 120.00200 * 179.97438 * 2 1 3 31 31 H 1.00897 * 110.99821 * 62.10355 * 6 5 3 32 32 H 1.08998 * 109.47415 * 64.70971 * 7 6 5 33 33 H 1.09005 * 109.46686 * 304.70748 * 7 6 5 34 34 H 1.07999 * 119.97111 * 0.02562 * 9 8 7 35 35 H 1.08000 * 120.03183 * 179.69674 * 10 9 8 36 36 H 0.97005 * 120.00080 * 180.02562 * 16 15 13 37 37 H 1.08004 * 120.02950 * 180.02562 * 21 11 10 38 38 H 1.07995 * 119.97085 * 179.97438 * 22 21 11 39 39 H 1.09003 * 110.48565 * 214.39783 * 23 5 3 40 40 H 1.08997 * 110.48954 * 337.04001 * 23 5 3 41 41 H 1.08997 * 110.71765 * 279.57010 * 24 23 5 42 42 H 1.09004 * 110.92417 * 156.29575 * 24 23 5 43 43 H 1.08996 * 110.49095 * 203.40512 * 25 24 23 44 44 H 1.09004 * 110.48589 * 80.76204 * 25 24 23 45 45 H 1.08993 * 110.03586 * 359.95180 * 26 5 3 46 46 H 1.09002 * 110.03179 * 121.38601 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2155 0.0915 5 6 3.6416 1.1696 -0.1136 6 7 4.2020 0.0162 0.6031 7 6 3.8813 0.0798 2.0352 8 6 4.5672 -1.0532 2.7543 9 6 3.9257 -2.2703 2.8946 10 6 4.5492 -3.3085 3.5584 11 6 5.8263 -3.1331 4.0750 12 8 6.4441 -4.1537 4.7227 13 6 5.7237 -5.2751 4.9258 14 1 4.7322 -5.3631 4.5071 15 6 6.2559 -6.3152 5.6723 16 7 7.4640 -6.2082 6.1820 17 14 5.2581 -7.8693 5.9531 18 1 4.9367 -8.4943 4.6450 19 1 6.0462 -8.8217 6.7759 20 1 3.9983 -7.5274 6.6612 21 6 6.4702 -1.9115 3.9270 22 6 5.8391 -0.8753 3.2676 23 6 4.0593 1.1234 -1.5979 24 6 4.3010 2.6082 -1.9701 25 6 4.9571 3.1802 -0.6890 26 6 4.2117 2.4769 0.4641 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.9501 -0.8401 0.0004 31 1 3.8816 -0.8510 0.1989 32 1 2.8029 -0.0041 2.1702 33 1 4.2257 1.0303 2.4428 34 1 2.9344 -2.4078 2.4885 35 1 4.0458 -4.2573 3.6719 36 1 7.8364 -6.9361 6.7040 37 1 7.4636 -1.7722 4.3273 38 1 6.3391 0.0750 3.1526 39 1 4.9761 0.5461 -1.7185 40 1 3.2593 0.7020 -2.2065 41 1 3.3572 3.1120 -2.1787 42 1 4.9775 2.6912 -2.8208 43 1 4.8120 4.2591 -0.6351 44 1 6.0189 2.9353 -0.6623 45 1 3.4015 3.1099 0.8259 46 1 4.9042 2.2555 1.2763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733999281.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:40 Heat of formation + Delta-G solvation = -61.658215 kcal Electronic energy + Delta-G solvation = -26627.249338 eV Core-core repulsion = 22902.230006 eV Total energy + Delta-G solvation = -3725.019332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.76284 -40.71549 -38.74567 -38.14136 -36.13686 -35.06029 -34.21170 -31.78109 -31.47137 -29.80569 -28.63525 -27.57424 -27.16052 -25.26084 -23.58659 -22.96767 -22.19448 -21.35250 -20.35802 -19.82489 -18.93993 -18.66872 -17.26245 -16.96831 -16.50580 -16.33597 -16.12940 -15.88332 -15.83243 -15.57758 -15.38501 -15.13179 -14.89607 -14.35501 -14.26509 -14.04050 -13.80257 -13.63812 -13.26236 -13.19665 -13.10623 -12.85909 -12.51701 -12.36320 -12.30729 -12.13970 -12.09310 -11.98485 -11.91680 -11.73710 -11.51704 -11.21604 -11.11768 -10.77072 -10.21750 -9.74661 -9.47017 -8.89583 -8.45463 -6.13629 0.63924 0.68976 1.36019 1.46278 1.49027 1.52247 2.13696 2.18985 2.77183 3.06339 3.32186 3.50863 3.55848 3.60138 3.80808 4.01069 4.06294 4.21938 4.23667 4.37901 4.38841 4.49607 4.52003 4.55028 4.63765 4.67394 4.75312 4.81681 4.82300 4.87191 4.89703 5.03553 5.10768 5.13951 5.16800 5.22461 5.23618 5.33198 5.33925 5.50469 5.59641 5.74033 5.80911 5.86565 6.04792 6.25069 6.27921 6.45721 6.99354 7.10806 7.81195 8.77710 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020791 B = 0.002702 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.411896 B =10358.701204 C =11227.260313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.729 5.729 3 C 0.489 3.511 4 O -0.574 6.574 5 C 0.102 3.898 6 N -0.657 5.657 7 C 0.115 3.885 8 C -0.154 4.154 9 C -0.058 4.058 10 C -0.242 4.242 11 C 0.115 3.885 12 O -0.234 6.234 13 C -0.413 4.413 14 H 0.103 0.897 15 C -0.024 4.024 16 N -0.922 5.922 17 Si 1.018 2.982 18 H -0.256 1.256 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.206 4.206 22 C -0.045 4.045 23 C -0.102 4.102 24 C -0.121 4.121 25 C -0.115 4.115 26 C -0.113 4.113 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.410 0.590 31 H 0.349 0.651 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.141 0.859 35 H 0.119 0.881 36 H 0.272 0.728 37 H 0.109 0.891 38 H 0.142 0.858 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.409 13.233 -16.347 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.382 5.382 3 C 0.274 3.726 4 O -0.452 6.452 5 C 0.007 3.993 6 N -0.291 5.291 7 C -0.013 4.013 8 C -0.155 4.155 9 C -0.077 4.077 10 C -0.261 4.261 11 C 0.065 3.935 12 O -0.140 6.140 13 C -0.489 4.489 14 H 0.120 0.880 15 C -0.221 4.221 16 N -0.560 5.560 17 Si 0.837 3.163 18 H -0.180 1.180 19 H -0.198 1.198 20 H -0.182 1.182 21 C -0.226 4.226 22 C -0.064 4.064 23 C -0.141 4.141 24 C -0.159 4.159 25 C -0.153 4.153 26 C -0.152 4.152 27 H 0.125 0.875 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.246 0.754 31 H 0.169 0.831 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.159 0.841 35 H 0.137 0.863 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.160 0.840 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.896 14.119 -16.009 23.966 hybrid contribution -0.917 -1.526 0.640 1.892 sum -11.813 12.593 -15.369 23.116 Atomic orbital electron populations 1.21666 0.78767 1.04124 1.01480 1.45903 1.08574 1.08758 1.74923 1.22093 0.92253 0.83567 0.74730 1.90650 1.71270 1.32877 1.50440 1.21993 0.86311 0.93669 0.97278 1.60739 1.62172 1.04189 1.01980 1.20702 0.96645 0.96738 0.87219 1.19432 0.95768 0.95438 1.04868 1.20916 0.99299 0.91478 0.95977 1.21218 0.96217 1.01481 1.07165 1.19957 0.92583 0.88875 0.92105 1.83946 1.40378 1.22127 1.67583 1.21787 1.00833 0.91858 1.34433 0.87953 1.26585 0.97667 1.02674 0.95161 1.70182 1.17041 1.34495 1.34322 0.84664 0.77421 0.74950 0.79296 1.17979 1.19837 1.18203 1.20446 1.01644 0.92027 1.08439 1.20807 0.94053 0.97412 0.94105 1.22416 1.02737 0.98563 0.90334 1.22472 1.00693 0.94376 0.98325 1.22281 0.99833 0.99705 0.93493 1.22244 0.99994 0.93455 0.99462 0.87532 0.93412 0.92646 0.75405 0.83078 0.94309 0.89835 0.84116 0.86312 0.91889 0.87239 0.84008 0.88219 0.91152 0.92557 0.89407 0.91259 0.90408 0.91948 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.71 127.77 1.37 2.50 16 2 N -0.73 -11.44 5.09 -484.51 -2.47 -13.90 16 3 C 0.49 10.38 5.46 87.66 0.48 10.86 16 4 O -0.57 -16.66 15.51 -3.04 -0.05 -16.71 16 5 C 0.10 1.85 0.80 3.51 0.00 1.85 16 6 N -0.66 -12.00 5.82 -474.25 -2.76 -14.76 16 7 C 0.11 2.49 5.13 85.56 0.44 2.93 16 8 C -0.15 -4.37 5.44 -19.83 -0.11 -4.48 16 9 C -0.06 -1.79 9.69 22.25 0.22 -1.58 16 10 C -0.24 -9.92 9.17 22.39 0.21 -9.71 16 11 C 0.12 5.59 6.65 22.58 0.15 5.74 16 12 O -0.23 -13.92 9.76 -22.70 -0.22 -14.14 16 13 C -0.41 -23.68 9.49 67.92 0.64 -23.04 16 14 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 15 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 16 N -0.92 -56.40 13.67 21.61 0.30 -56.10 16 17 Si 1.02 42.11 29.55 68.60 2.03 44.13 16 18 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 19 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 20 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 21 C -0.21 -8.59 9.99 22.39 0.22 -8.37 16 22 C -0.05 -1.46 9.69 22.25 0.22 -1.25 16 23 C -0.10 -1.52 6.05 31.70 0.19 -1.33 16 24 C -0.12 -1.78 6.91 31.91 0.22 -1.56 16 25 C -0.12 -1.84 6.83 31.67 0.22 -1.62 16 26 C -0.11 -2.22 5.42 31.32 0.17 -2.05 16 27 H 0.11 0.79 8.14 -2.38 -0.02 0.78 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.41 4.70 7.26 -92.70 -0.67 4.03 16 31 H 0.35 5.47 7.37 -89.70 -0.66 4.81 16 32 H 0.04 0.82 6.88 -2.39 -0.02 0.81 16 33 H 0.08 1.83 6.11 -2.38 -0.01 1.81 16 34 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.12 4.96 5.64 -2.91 -0.02 4.94 16 36 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 37 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 38 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 39 H 0.10 1.38 8.05 -2.39 -0.02 1.36 16 40 H 0.07 0.96 7.83 -2.39 -0.02 0.94 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 1.47 6.66 -2.39 -0.02 1.45 16 46 H 0.08 1.58 6.36 -2.39 -0.02 1.57 16 Total: -1.00 -74.30 370.51 1.60 -72.69 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -0.32 Total: 30.75 kcal Atomic # 6 Polarization: -37.06 SS G_CDS: 5.10 Total: -31.96 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -4.93 Total: -84.77 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.27 Total: -30.85 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -74.30 1.60 -72.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733999281.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.037 kcal (2) G-P(sol) polarization free energy of solvation -74.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds