Wall clock time and date at job start Tue Mar 31 2020 12:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35895 * 117.00133 * 2 1 4 4 C 1.38825 * 119.96522 * 0.26700 * 3 2 1 5 5 C 1.38269 * 120.09192 * 180.24098 * 4 3 2 6 6 C 1.38219 * 119.73629 * 359.47054 * 5 4 3 7 7 C 1.37834 * 120.50084 * 0.32306 * 6 5 4 8 8 C 1.38624 * 119.97171 * 180.02562 * 3 2 1 9 9 N 1.40298 * 120.58297 * 179.89888 * 7 6 5 10 10 C 1.46897 * 111.00696 * 51.17443 * 9 7 6 11 11 C 1.50702 * 109.47081 * 150.80779 * 10 9 7 12 12 O 1.21281 * 120.00021 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00146 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00057 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47223 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99556 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00147 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99930 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00052 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47462 * 90.00024 * 19 17 15 21 21 H 1.48499 * 109.47048 * 209.99981 * 19 17 15 22 22 H 1.48502 * 109.46800 * 329.99743 * 19 17 15 23 23 C 1.46806 * 110.27285 * 287.73864 * 9 7 6 24 24 C 1.51712 * 111.15585 * 87.87886 * 23 9 7 25 25 C 1.51773 * 113.89225 * 292.46812 * 24 23 9 26 26 C 1.51487 * 119.67254 * 180.37147 * 6 5 4 27 27 H 1.08998 * 109.47469 * 300.00142 * 1 2 3 28 28 H 1.08998 * 109.47440 * 60.00290 * 1 2 3 29 29 H 1.09001 * 109.47203 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.95318 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.13271 * 179.74653 * 5 4 3 32 32 H 1.08008 * 120.21559 * 0.02562 * 8 3 2 33 33 H 1.09003 * 109.47178 * 270.81223 * 10 9 7 34 34 H 1.09001 * 109.47053 * 30.81392 * 10 9 7 35 35 H 0.97001 * 119.99713 * 0.02562 * 13 11 10 36 36 H 1.09003 * 109.47190 * 300.00031 * 14 13 11 37 37 H 1.08994 * 109.47664 * 59.99966 * 14 13 11 38 38 H 0.97005 * 119.99816 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.14018 * 327.44810 * 23 9 7 40 40 H 1.08998 * 109.14338 * 208.31447 * 23 9 7 41 41 H 1.09003 * 108.59958 * 171.32640 * 24 23 9 42 42 H 1.09000 * 108.60168 * 53.60671 * 24 23 9 43 43 H 1.09007 * 109.23905 * 306.51847 * 25 24 23 44 44 H 1.09001 * 109.24775 * 187.11253 * 25 24 23 45 45 H 1.08993 * 109.71008 * 9.15606 * 26 6 5 46 46 H 1.09000 * 109.70832 * 129.75008 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2891 2.3747 0.0056 5 6 1.9141 3.6080 0.0006 6 6 3.2946 3.6771 0.0011 7 6 4.0526 2.5259 -0.0002 8 6 3.4303 1.2827 -0.0005 9 7 5.4539 2.5939 -0.0018 10 6 5.9395 3.4779 1.0662 11 6 7.3019 3.0187 1.5178 12 8 7.8178 2.0506 1.0006 13 7 7.9475 3.6843 2.4959 14 6 9.2722 3.2382 2.9345 15 6 9.7703 4.1450 4.0303 16 1 9.1612 4.9712 4.3661 17 6 11.0035 3.9198 4.6042 18 7 11.4384 4.7114 5.5601 19 14 12.0567 2.4903 4.0239 20 1 12.9328 2.9400 2.9124 21 1 12.8949 2.0042 5.1493 22 1 11.1796 1.3901 3.5489 23 6 5.9401 3.0381 -1.3139 24 6 6.0072 4.5519 -1.3892 25 6 4.6497 5.2297 -1.3576 26 6 3.9778 5.0291 0.0041 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2107 2.3166 0.0095 31 1 1.3260 4.5138 0.0008 32 1 4.0215 0.3787 -0.0014 33 1 6.0062 4.4990 0.6905 34 1 5.2476 3.4449 1.9078 35 1 7.5350 4.4588 2.9093 36 1 9.2057 2.2172 3.3105 37 1 9.9639 3.2711 2.0928 38 1 12.3062 4.5532 5.9636 39 1 5.2658 2.6713 -2.0878 40 1 6.9352 2.6273 -1.4842 41 1 6.5142 4.8319 -2.3127 42 1 6.5973 4.9160 -0.5482 43 1 4.0172 4.8036 -2.1365 44 1 4.7763 6.2965 -1.5422 45 1 3.2395 5.8137 0.1689 46 1 4.7291 5.0595 0.7933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756914569.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:04 Heat of formation + Delta-G solvation = -14.858266 kcal Electronic energy + Delta-G solvation = -27034.170072 eV Core-core repulsion = 23311.180138 eV Total energy + Delta-G solvation = -3722.989934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.34068 -39.66332 -38.36095 -36.38636 -34.36553 -34.00573 -32.32384 -31.37560 -30.58960 -29.36572 -27.68793 -27.25427 -25.55945 -24.29024 -22.70134 -22.16512 -20.73695 -20.47893 -19.44251 -18.14771 -17.36934 -16.79459 -16.34434 -16.09336 -15.97156 -15.74291 -15.51701 -14.84584 -14.37789 -14.35005 -14.09449 -13.87800 -13.66441 -13.38235 -13.21847 -12.96069 -12.70661 -12.62955 -12.49145 -12.32690 -12.22294 -11.75851 -11.52910 -11.31222 -11.24233 -10.98580 -10.85611 -10.78092 -10.74244 -10.33480 -9.94186 -9.46922 -9.22065 -8.97564 -8.74902 -8.30736 -8.20614 -8.06599 -6.19383 -4.21260 1.10504 1.25460 2.96038 3.28285 3.33414 3.35613 3.45268 3.50391 3.63900 4.31255 4.36373 4.49344 4.52192 4.65911 4.73532 4.79753 4.85075 4.88501 4.95508 5.03658 5.15057 5.16799 5.17741 5.24652 5.30911 5.35972 5.50503 5.54243 5.56528 5.73350 5.77874 5.82718 5.90200 6.03455 6.12047 6.15610 6.21517 6.31188 6.45600 6.78946 6.90065 7.12090 7.17779 7.29021 7.36219 7.44050 8.18818 8.57282 8.78774 9.04172 9.41480 10.92577 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.002999 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.926604 B = 9332.841726 C = 9952.421692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.125 3.875 4 C -0.211 4.211 5 C -0.072 4.072 6 C -0.145 4.145 7 C 0.133 3.867 8 C -0.123 4.123 9 N -0.470 5.470 10 C 0.010 3.990 11 C 0.500 3.500 12 O -0.536 6.536 13 N -0.711 5.711 14 C 0.223 3.777 15 C -0.542 4.542 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.894 5.894 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.260 1.260 23 C 0.062 3.938 24 C -0.166 4.166 25 C -0.114 4.114 26 C -0.105 4.105 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.140 0.860 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.394 0.606 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.267 0.733 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.357 -0.778 -14.434 27.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.080 3.920 4 C -0.230 4.230 5 C -0.090 4.090 6 C -0.147 4.147 7 C 0.039 3.961 8 C -0.143 4.143 9 N -0.190 5.190 10 C -0.120 4.120 11 C 0.284 3.716 12 O -0.413 6.413 13 N -0.361 5.361 14 C 0.101 3.899 15 C -0.580 4.580 16 H 0.097 0.903 17 C -0.127 4.127 18 N -0.531 5.531 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.184 1.184 23 C -0.064 4.064 24 C -0.205 4.205 25 C -0.151 4.151 26 C -0.141 4.141 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.157 0.843 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.227 0.773 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.494 -2.137 -14.590 26.896 hybrid contribution -0.203 0.639 -0.026 0.671 sum -22.696 -1.499 -14.617 27.037 Atomic orbital electron populations 1.23032 0.78549 1.03854 1.01218 1.86085 1.21198 1.26913 1.88816 1.18879 0.92011 0.84115 0.97005 1.21222 0.99823 0.92315 1.09637 1.20736 0.93436 0.96909 0.97958 1.20349 0.94085 0.95365 1.04898 1.18353 0.88717 0.91466 0.97582 1.20339 0.90779 0.98264 1.04886 1.59819 1.04765 1.50617 1.03801 1.22793 0.96282 0.97469 0.95454 1.20385 0.86691 0.83959 0.80553 1.90640 1.67905 1.26786 1.55986 1.46152 1.20711 1.31949 1.37249 1.19449 0.79450 0.96112 0.94937 1.21103 1.03862 1.14354 1.18679 0.90296 1.24797 0.97303 0.96230 0.94332 1.69886 1.20078 1.37917 1.25219 0.86817 0.80832 0.83397 0.78664 1.19887 1.20950 1.18424 1.21957 1.02289 0.92996 0.89149 1.21814 0.97946 0.97185 1.03532 1.21336 0.96166 1.00639 0.96959 1.21348 1.00371 0.93504 0.98901 0.92688 0.92790 0.88315 0.85627 0.85782 0.84253 0.88049 0.88515 0.77289 0.95786 0.96281 0.92305 0.91048 0.89123 0.90852 0.90644 0.91783 0.91327 0.90751 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.49 10.49 -19.41 -0.20 -3.70 16 3 C 0.13 1.46 6.68 -39.22 -0.26 1.20 16 4 C -0.21 -2.05 9.04 -39.35 -0.36 -2.40 16 5 C -0.07 -0.68 9.68 -39.58 -0.38 -1.07 16 6 C -0.14 -1.57 4.81 -104.39 -0.50 -2.07 16 7 C 0.13 1.72 4.27 -83.83 -0.36 1.36 16 8 C -0.12 -1.63 9.92 -39.15 -0.39 -2.02 16 9 N -0.47 -6.75 4.16 -173.42 -0.72 -7.47 16 10 C 0.01 0.14 3.40 -4.98 -0.02 0.12 16 11 C 0.50 9.63 7.81 -10.98 -0.09 9.55 16 12 O -0.54 -12.43 16.22 5.56 0.09 -12.34 16 13 N -0.71 -14.41 5.55 -61.47 -0.34 -14.75 16 14 C 0.22 5.53 4.50 -5.19 -0.02 5.50 16 15 C -0.54 -14.91 9.83 -34.44 -0.34 -15.25 16 16 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 17 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 18 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 19 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 23 C 0.06 0.79 5.67 -4.53 -0.03 0.76 16 24 C -0.17 -1.74 5.18 -28.01 -0.14 -1.88 16 25 C -0.11 -1.01 5.67 -27.27 -0.15 -1.16 16 26 C -0.10 -0.96 5.44 -27.41 -0.15 -1.11 16 27 H 0.05 0.31 7.64 -51.93 -0.40 -0.09 16 28 H 0.05 0.29 7.67 -51.93 -0.40 -0.11 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.13 0.91 6.28 -52.49 -0.33 0.58 16 31 H 0.12 0.90 7.97 -52.49 -0.42 0.48 16 32 H 0.14 1.95 8.06 -52.48 -0.42 1.52 16 33 H 0.10 1.23 2.62 -51.93 -0.14 1.09 16 34 H 0.10 1.30 7.56 -51.93 -0.39 0.90 16 35 H 0.39 6.95 8.32 -40.82 -0.34 6.61 16 36 H 0.02 0.64 7.20 -51.93 -0.37 0.26 16 37 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 39 H 0.07 0.84 7.76 -51.93 -0.40 0.43 16 40 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.86 5.61 -51.93 -0.29 0.57 16 43 H 0.06 0.58 7.89 -51.92 -0.41 0.17 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.57 7.92 -51.93 -0.41 0.16 16 46 H 0.09 0.90 4.21 -51.93 -0.22 0.68 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -33.52 358.67 -8.56 -42.08 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.60 Total: 4.84 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -2.29 Total: -5.20 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.29 Total: -48.08 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.11 Total: -16.04 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.52 -8.56 -42.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756914569.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.219 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds