Wall clock time and date at job start Tue Mar 31 2020 12:06:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35891 * 117.00206 * 2 1
4 4 C 1.38752 * 120.02821 * 359.97133 * 3 2 1
5 5 C 1.38220 * 120.02298 * 180.02562 * 4 3 2
6 6 C 1.38332 * 119.69464 * 359.95060 * 5 4 3
7 7 C 1.37350 * 120.38375 * 0.11461 * 6 5 4
8 8 C 1.38192 * 120.38002 * 359.87881 * 7 6 5
9 9 C 1.51484 * 119.84983 * 179.97438 * 7 6 5
10 10 C 1.53192 * 108.28688 * 290.57699 * 9 7 6
11 11 N 1.45369 * 110.86651 * 84.82000 * 10 9 7
12 12 C 1.46898 * 111.00016 * 58.75989 * 11 10 9
13 13 C 1.50699 * 109.46980 * 75.82003 * 12 11 10
14 14 O 1.21285 * 119.99941 * 355.40391 * 13 12 11
15 15 N 1.34778 * 120.00270 * 175.13862 * 13 12 11
16 16 C 1.46499 * 119.99953 * 180.27086 * 15 13 12
17 17 C 1.50708 * 109.46998 * 179.97438 * 16 15 13
18 18 H 1.07998 * 119.99712 * 359.97438 * 17 16 15
19 19 C 1.37871 * 120.00063 * 180.02562 * 17 16 15
20 20 N 1.31512 * 120.00143 * 359.97438 * 19 17 16
21 21 Si 1.86803 * 120.00018 * 180.02562 * 19 17 16
22 22 H 1.48496 * 109.46994 * 359.97438 * 21 19 17
23 23 H 1.48500 * 109.47144 * 120.00067 * 21 19 17
24 24 H 1.48501 * 109.46900 * 239.99928 * 21 19 17
25 25 C 1.45385 * 116.66706 * 290.27857 * 11 10 9
26 26 C 1.51470 * 119.74454 * 180.09299 * 6 5 4
27 27 H 1.08994 * 109.47456 * 180.02562 * 1 2 3
28 28 H 1.09005 * 109.47074 * 300.00834 * 1 2 3
29 29 H 1.09001 * 109.46922 * 60.00290 * 1 2 3
30 30 H 1.07999 * 119.99017 * 0.02562 * 4 3 2
31 31 H 1.08002 * 120.14920 * 180.02562 * 5 4 3
32 32 H 1.08002 * 120.21485 * 180.02562 * 8 7 6
33 33 H 1.09000 * 109.70497 * 170.87902 * 9 7 6
34 34 H 1.08996 * 109.70060 * 50.27591 * 9 7 6
35 35 H 1.08998 * 109.19977 * 324.46179 * 10 9 7
36 36 H 1.09003 * 109.16341 * 205.15209 * 10 9 7
37 37 H 1.08995 * 109.47174 * 315.81951 * 12 11 10
38 38 H 1.09004 * 109.47512 * 195.81129 * 12 11 10
39 39 H 0.97000 * 119.99564 * 0.27218 * 15 13 12
40 40 H 1.08998 * 109.47464 * 299.99738 * 16 15 13
41 41 H 1.08997 * 109.47586 * 60.00127 * 16 15 13
42 42 H 0.97006 * 120.00485 * 180.02562 * 20 19 17
43 43 H 1.09001 * 109.19943 * 190.03775 * 25 11 10
44 44 H 1.09003 * 109.19929 * 309.32327 * 25 11 10
45 45 H 1.09005 * 109.70343 * 9.21606 * 26 6 5
46 46 H 1.09000 * 109.70039 * 129.81465 * 26 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2108 0.0000
4 6 1.2909 2.3749 -0.0006
5 6 1.9186 3.6063 -0.0011
6 6 3.3004 3.6712 0.0000
7 6 4.0498 2.5202 -0.0008
8 6 3.4322 1.2840 -0.0001
9 6 5.5623 2.6053 -0.0001
10 6 6.0140 3.1440 -1.3613
11 7 5.9783 4.5971 -1.3808
12 6 6.8429 5.1590 -0.3346
13 6 8.2844 5.0437 -0.7586
14 8 8.5697 4.4686 -1.7876
15 7 9.2562 5.5844 0.0029
16 6 10.6570 5.4774 -0.4123
17 6 11.5358 6.1593 0.6045
18 1 11.0949 6.6260 1.4729
19 6 12.9026 6.1882 0.4256
20 7 13.4395 5.6203 -0.6322
21 14 13.9920 7.0327 1.6863
22 1 13.1494 7.5886 2.7754
23 1 14.9482 6.0481 2.2531
24 1 14.7443 8.1334 1.0322
25 6 4.6638 5.2178 -1.3594
26 6 3.9894 5.0201 0.0015
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3633 0.5140 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 0.2124 2.3187 -0.0007
31 1 1.3328 4.5137 -0.0012
32 1 4.0241 0.3806 -0.0003
33 1 5.9861 1.6142 0.1618
34 1 5.8920 3.2800 0.7898
35 1 5.3521 2.7587 -2.1368
36 1 7.0318 2.8077 -1.5593
37 1 6.6925 4.6098 0.5948
38 1 6.5923 6.2087 -0.1810
39 1 9.0280 6.0442 0.8260
40 1 10.9348 4.4260 -0.4864
41 1 10.7859 5.9564 -1.3829
42 1 14.4011 5.6403 -0.7579
43 1 4.7681 6.2849 -1.5562
44 1 4.0432 4.7699 -2.1355
45 1 3.2543 5.8080 0.1659
46 1 4.7411 5.0478 0.7904
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000760927332.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:06:48
Heat of formation + Delta-G solvation = -42.259815 kcal
Electronic energy + Delta-G solvation = -26352.976003 eV
Core-core repulsion = 22628.797849 eV
Total energy + Delta-G solvation = -3724.178154 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-40.88325 -39.57582 -38.33708 -36.66750 -34.07530 -33.30698 -32.29295 -31.99394
-30.17147 -28.74802 -27.57017 -26.80549 -25.84524 -24.06632 -22.85617 -22.53813
-20.64331 -20.35334 -19.36430 -18.01913 -17.12032 -16.77263 -16.05608 -16.01895
-15.91754 -15.59967 -15.26156 -14.89668 -14.50563 -14.38739 -14.14879 -13.96042
-13.77365 -13.46037 -13.10203 -12.96103 -12.58411 -12.41515 -12.09827 -12.00988
-11.89371 -11.88465 -11.42464 -11.32010 -11.22058 -11.07838 -10.96950 -10.90289
-10.85179 -10.60627 -10.28943 -9.34737 -9.14645 -8.98050 -8.70658 -8.46347
-7.83387 -7.73122 -6.14395 -4.21013 1.10483 1.20575 2.97361 3.24602
3.31620 3.34582 3.46777 3.49578 3.73392 4.30044 4.44930 4.47557
4.52269 4.62571 4.73839 4.77553 4.96289 4.99104 5.00263 5.06166
5.09323 5.14519 5.21617 5.26444 5.34341 5.41200 5.48352 5.50067
5.65177 5.69317 5.73857 5.80068 5.98341 6.00043 6.08629 6.15576
6.30227 6.48748 6.55651 7.06963 7.13189 7.36994 7.40900 7.51831
7.56854 7.71962 8.00616 8.70152 8.83757 9.20846 9.46175 10.95799
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.029634 B = 0.002253 C = 0.002217
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 944.624822 B =12425.060673 C =12624.955113
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.319 6.319
3 C 0.122 3.878
4 C -0.213 4.213
5 C -0.075 4.075
6 C -0.116 4.116
7 C -0.035 4.035
8 C -0.147 4.147
9 C -0.128 4.128
10 C 0.077 3.923
11 N -0.536 5.536
12 C 0.032 3.968
13 C 0.498 3.502
14 O -0.538 6.538
15 N -0.718 5.718
16 C 0.251 3.749
17 C -0.542 4.542
18 H 0.063 0.937
19 C 0.062 3.938
20 N -0.885 5.885
21 Si 0.903 3.097
22 H -0.272 1.272
23 H -0.282 1.282
24 H -0.282 1.282
25 C 0.076 3.924
26 C -0.118 4.118
27 H 0.098 0.902
28 H 0.054 0.946
29 H 0.054 0.946
30 H 0.125 0.875
31 H 0.124 0.876
32 H 0.131 0.869
33 H 0.081 0.919
34 H 0.084 0.916
35 H 0.073 0.927
36 H 0.097 0.903
37 H 0.068 0.932
38 H 0.095 0.905
39 H 0.388 0.612
40 H 0.025 0.975
41 H 0.026 0.974
42 H 0.265 0.735
43 H 0.079 0.921
44 H 0.075 0.925
45 H 0.075 0.925
46 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.523 -5.649 3.355 28.297
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.233 6.233
3 C 0.077 3.923
4 C -0.232 4.232
5 C -0.094 4.094
6 C -0.116 4.116
7 C -0.035 4.035
8 C -0.165 4.165
9 C -0.167 4.167
10 C -0.051 4.051
11 N -0.258 5.258
12 C -0.099 4.099
13 C 0.282 3.718
14 O -0.416 6.416
15 N -0.367 5.367
16 C 0.131 3.869
17 C -0.580 4.580
18 H 0.081 0.919
19 C -0.141 4.141
20 N -0.523 5.523
21 Si 0.730 3.270
22 H -0.197 1.197
23 H -0.208 1.208
24 H -0.208 1.208
25 C -0.052 4.052
26 C -0.157 4.157
27 H 0.117 0.883
28 H 0.072 0.928
29 H 0.073 0.927
30 H 0.143 0.857
31 H 0.142 0.858
32 H 0.149 0.851
33 H 0.099 0.901
34 H 0.102 0.898
35 H 0.091 0.909
36 H 0.116 0.884
37 H 0.086 0.914
38 H 0.113 0.887
39 H 0.220 0.780
40 H 0.043 0.957
41 H 0.044 0.956
42 H 0.075 0.925
43 H 0.098 0.902
44 H 0.094 0.906
45 H 0.094 0.906
46 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -26.857 -6.187 2.060 27.637
hybrid contribution -0.199 0.526 1.865 1.948
sum -27.056 -5.660 3.926 27.919
Atomic orbital electron populations
1.23032 0.78545 1.03837 1.01259 1.86068 1.21257 1.27105 1.88855
1.19028 0.92267 0.84061 0.96920 1.21180 0.99776 0.92395 1.09871
1.20848 0.93705 0.96905 0.97898 1.19610 0.93276 0.95018 1.03692
1.19553 0.95911 0.91636 0.96380 1.20365 0.91204 0.98098 1.06877
1.21709 0.90526 1.03305 1.01143 1.21850 1.03420 0.85596 0.94235
1.59052 1.11198 1.06854 1.48663 1.22071 0.92472 1.01182 0.94128
1.20402 0.86845 0.79943 0.84651 1.90635 1.83594 1.42947 1.24410
1.46454 1.08979 1.56113 1.25168 1.19061 0.74396 0.97457 0.96020
1.21278 0.91772 1.37032 1.07927 0.91900 1.24958 0.97993 0.95376
0.95778 1.69986 1.11881 1.43201 1.27203 0.86375 0.80371 0.79185
0.81050 1.19665 1.20835 1.20828 1.21861 0.88204 0.99852 0.95276
1.21579 1.00246 0.93699 1.00202 0.88315 0.92765 0.92711 0.85747
0.85777 0.85121 0.90076 0.89835 0.90898 0.88438 0.91444 0.88703
0.77964 0.95682 0.95610 0.92538 0.90249 0.90616 0.90601 0.90488
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.17 9.81 101.05 0.99 1.16 16
2 O -0.32 -3.25 10.50 -19.40 -0.20 -3.46 16
3 C 0.12 1.32 6.69 -39.18 -0.26 1.06 16
4 C -0.21 -1.99 9.04 -39.40 -0.36 -2.35 16
5 C -0.08 -0.70 9.69 -39.55 -0.38 -1.08 16
6 C -0.12 -1.19 5.01 -104.53 -0.52 -1.72 16
7 C -0.03 -0.39 5.00 -104.58 -0.52 -0.91 16
8 C -0.15 -1.66 9.63 -39.39 -0.38 -2.04 16
9 C -0.13 -1.48 5.37 -27.40 -0.15 -1.62 16
10 C 0.08 1.04 5.34 -4.55 -0.02 1.01 16
11 N -0.54 -7.33 4.07 -238.39 -0.97 -8.30 16
12 C 0.03 0.45 4.26 -4.98 -0.02 0.42 16
13 C 0.50 9.73 7.67 -10.99 -0.08 9.65 16
14 O -0.54 -12.81 14.90 5.55 0.08 -12.73 16
15 N -0.72 -14.89 5.55 -61.47 -0.34 -15.23 16
16 C 0.25 6.66 5.43 -5.19 -0.03 6.63 16
17 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16
18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16
19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
20 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16
21 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16
22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16
23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
25 C 0.08 0.81 5.46 -4.55 -0.02 0.78 16
26 C -0.12 -1.08 5.38 -27.42 -0.15 -1.23 16
27 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16
28 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16
29 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16
30 H 0.12 0.88 6.29 -52.49 -0.33 0.55 16
31 H 0.12 0.88 7.98 -52.49 -0.42 0.46 16
32 H 0.13 1.38 7.98 -52.49 -0.42 0.96 16
33 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16
34 H 0.08 0.96 4.75 -51.93 -0.25 0.71 16
35 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16
36 H 0.10 1.59 6.56 -51.93 -0.34 1.25 16
37 H 0.07 0.82 4.83 -51.93 -0.25 0.57 16
38 H 0.09 1.11 7.77 -51.93 -0.40 0.71 16
39 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16
40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
41 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16
42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16
43 H 0.08 0.77 8.07 -51.93 -0.42 0.36 16
44 H 0.08 0.82 7.86 -51.93 -0.41 0.41 16
45 H 0.08 0.56 7.92 -51.93 -0.41 0.15 16
46 H 0.08 0.73 5.57 -51.93 -0.29 0.44 16
LS Contribution 363.01 15.07 5.47 5.47
Total: -1.00 -33.36 363.01 -9.27 -42.64
By element:
Atomic # 1 Polarization: 11.49 SS G_CDS: -6.69 Total: 4.80 kcal
Atomic # 6 Polarization: -1.27 SS G_CDS: -2.33 Total: -3.60 kcal
Atomic # 7 Polarization: -48.39 SS G_CDS: -0.58 Total: -48.97 kcal
Atomic # 8 Polarization: -16.06 SS G_CDS: -0.12 Total: -16.18 kcal
Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -33.36 -9.27 -42.64 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000760927332.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.376 kcal
(2) G-P(sol) polarization free energy of solvation -33.364 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.988 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.260 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds