Wall clock time and date at job start Tue Mar 31 2020 12:06:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35891 * 117.00206 * 2 1
4 4 C 1.38752 * 120.02821 * 359.97133 * 3 2 1
5 5 C 1.38220 * 120.02298 * 180.02562 * 4 3 2
6 6 C 1.38332 * 119.69464 * 359.95060 * 5 4 3
7 7 C 1.37350 * 120.38375 * 0.11461 * 6 5 4
8 8 C 1.38192 * 120.38002 * 359.87881 * 7 6 5
9 9 C 1.51484 * 119.84983 * 179.97438 * 7 6 5
10 10 C 1.53192 * 108.28688 * 290.57699 * 9 7 6
11 11 N 1.45369 * 110.86651 * 84.82000 * 10 9 7
12 12 C 1.46898 * 111.00016 * 58.75989 * 11 10 9
13 13 C 1.50699 * 109.46980 * 75.82003 * 12 11 10
14 14 O 1.21285 * 119.99941 * 355.40391 * 13 12 11
15 15 N 1.34778 * 120.00270 * 175.13862 * 13 12 11
16 16 C 1.46499 * 119.99953 * 180.27086 * 15 13 12
17 17 C 1.50708 * 109.46998 * 179.97438 * 16 15 13
18 18 H 1.07998 * 119.99712 * 359.97438 * 17 16 15
19 19 C 1.37871 * 120.00063 * 180.02562 * 17 16 15
20 20 N 1.31512 * 120.00143 * 359.97438 * 19 17 16
21 21 Si 1.86803 * 120.00018 * 180.02562 * 19 17 16
22 22 H 1.48496 * 109.46994 * 359.97438 * 21 19 17
23 23 H 1.48500 * 109.47144 * 120.00067 * 21 19 17
24 24 H 1.48501 * 109.46900 * 239.99928 * 21 19 17
25 25 C 1.45385 * 116.66706 * 290.27857 * 11 10 9
26 26 C 1.51470 * 119.74454 * 180.09299 * 6 5 4
27 27 H 1.08994 * 109.47456 * 180.02562 * 1 2 3
28 28 H 1.09005 * 109.47074 * 300.00834 * 1 2 3
29 29 H 1.09001 * 109.46922 * 60.00290 * 1 2 3
30 30 H 1.07999 * 119.99017 * 0.02562 * 4 3 2
31 31 H 1.08002 * 120.14920 * 180.02562 * 5 4 3
32 32 H 1.08002 * 120.21485 * 180.02562 * 8 7 6
33 33 H 1.09000 * 109.70497 * 170.87902 * 9 7 6
34 34 H 1.08996 * 109.70060 * 50.27591 * 9 7 6
35 35 H 1.08998 * 109.19977 * 324.46179 * 10 9 7
36 36 H 1.09003 * 109.16341 * 205.15209 * 10 9 7
37 37 H 1.08995 * 109.47174 * 315.81951 * 12 11 10
38 38 H 1.09004 * 109.47512 * 195.81129 * 12 11 10
39 39 H 0.97000 * 119.99564 * 0.27218 * 15 13 12
40 40 H 1.08998 * 109.47464 * 299.99738 * 16 15 13
41 41 H 1.08997 * 109.47586 * 60.00127 * 16 15 13
42 42 H 0.97006 * 120.00485 * 180.02562 * 20 19 17
43 43 H 1.09001 * 109.19943 * 190.03775 * 25 11 10
44 44 H 1.09003 * 109.19929 * 309.32327 * 25 11 10
45 45 H 1.09005 * 109.70343 * 9.21606 * 26 6 5
46 46 H 1.09000 * 109.70039 * 129.81465 * 26 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2108 0.0000
4 6 1.2909 2.3749 -0.0006
5 6 1.9186 3.6063 -0.0011
6 6 3.3004 3.6712 0.0000
7 6 4.0498 2.5202 -0.0008
8 6 3.4322 1.2840 -0.0001
9 6 5.5623 2.6053 -0.0001
10 6 6.0140 3.1440 -1.3613
11 7 5.9783 4.5971 -1.3808
12 6 6.8429 5.1590 -0.3346
13 6 8.2844 5.0437 -0.7586
14 8 8.5697 4.4686 -1.7876
15 7 9.2562 5.5844 0.0029
16 6 10.6570 5.4774 -0.4123
17 6 11.5358 6.1593 0.6045
18 1 11.0949 6.6260 1.4729
19 6 12.9026 6.1882 0.4256
20 7 13.4395 5.6203 -0.6322
21 14 13.9920 7.0327 1.6863
22 1 13.1494 7.5886 2.7754
23 1 14.9482 6.0481 2.2531
24 1 14.7443 8.1334 1.0322
25 6 4.6638 5.2178 -1.3594
26 6 3.9894 5.0201 0.0015
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3633 0.5140 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 0.2124 2.3187 -0.0007
31 1 1.3328 4.5137 -0.0012
32 1 4.0241 0.3806 -0.0003
33 1 5.9861 1.6142 0.1618
34 1 5.8920 3.2800 0.7898
35 1 5.3521 2.7587 -2.1368
36 1 7.0318 2.8077 -1.5593
37 1 6.6925 4.6098 0.5948
38 1 6.5923 6.2087 -0.1810
39 1 9.0280 6.0442 0.8260
40 1 10.9348 4.4260 -0.4864
41 1 10.7859 5.9564 -1.3829
42 1 14.4011 5.6403 -0.7579
43 1 4.7681 6.2849 -1.5562
44 1 4.0432 4.7699 -2.1355
45 1 3.2543 5.8080 0.1659
46 1 4.7411 5.0478 0.7904
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000760927332.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:06:47
Heat of formation + Delta-G solvation = -65.838246 kcal
Electronic energy + Delta-G solvation = -26353.998441 eV
Core-core repulsion = 22628.797849 eV
Total energy + Delta-G solvation = -3725.200592 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.72534 -40.65639 -39.57339 -37.64044 -36.01386 -34.30567 -34.11727 -32.86193
-30.94021 -30.26187 -28.45060 -28.07312 -26.86228 -24.92041 -24.61137 -23.47733
-21.98807 -21.09097 -20.83417 -18.99223 -18.56484 -17.79075 -17.38901 -17.13830
-16.84819 -16.66527 -16.56359 -16.08381 -15.85923 -15.65656 -15.20196 -15.10202
-14.86886 -14.38589 -14.20692 -13.97713 -13.96947 -13.69291 -13.50674 -13.21070
-12.89347 -12.81327 -12.76485 -12.64984 -12.54788 -12.23402 -12.18935 -11.95859
-11.85217 -11.69578 -11.54065 -11.42395 -10.79040 -10.63940 -9.89862 -9.73847
-9.30866 -8.69554 -8.26987 -6.43354 0.34875 0.45377 1.44223 1.45403
1.58844 1.90136 2.31397 2.36919 2.51306 2.73238 3.07781 3.17572
3.63572 3.81027 3.93709 3.99227 4.06309 4.14065 4.20058 4.25100
4.31107 4.34933 4.38084 4.44954 4.46466 4.56841 4.57599 4.67857
4.75007 4.85000 4.90452 5.01793 5.05220 5.16511 5.17760 5.27486
5.28982 5.34325 5.43217 5.53778 5.72697 5.75770 5.83289 5.88974
6.07730 6.42521 6.46338 6.69056 7.04085 7.26598 7.63127 8.85329
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.029634 B = 0.002253 C = 0.002217
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 944.624822 B =12425.060673 C =12624.955113
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 O -0.341 6.341
3 C 0.110 3.890
4 C -0.213 4.213
5 C -0.074 4.074
6 C -0.125 4.125
7 C -0.046 4.046
8 C -0.168 4.168
9 C -0.118 4.118
10 C 0.085 3.915
11 N -0.558 5.558
12 C 0.049 3.951
13 C 0.493 3.507
14 O -0.587 6.587
15 N -0.712 5.712
16 C 0.269 3.731
17 C -0.553 4.553
18 H 0.085 0.915
19 C 0.001 3.999
20 N -0.932 5.932
21 Si 0.985 3.015
22 H -0.252 1.252
23 H -0.280 1.280
24 H -0.280 1.280
25 C 0.078 3.922
26 C -0.110 4.110
27 H 0.116 0.884
28 H 0.065 0.935
29 H 0.064 0.936
30 H 0.149 0.851
31 H 0.153 0.847
32 H 0.124 0.876
33 H 0.078 0.922
34 H 0.087 0.913
35 H 0.070 0.930
36 H 0.060 0.940
37 H 0.092 0.908
38 H 0.128 0.872
39 H 0.407 0.593
40 H -0.016 1.016
41 H -0.016 1.016
42 H 0.268 0.732
43 H 0.094 0.906
44 H 0.072 0.928
45 H 0.103 0.897
46 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -30.138 -3.721 5.673 30.892
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 O -0.256 6.256
3 C 0.065 3.935
4 C -0.231 4.231
5 C -0.091 4.091
6 C -0.125 4.125
7 C -0.046 4.046
8 C -0.187 4.187
9 C -0.157 4.157
10 C -0.043 4.043
11 N -0.280 5.280
12 C -0.081 4.081
13 C 0.280 3.720
14 O -0.467 6.467
15 N -0.363 5.363
16 C 0.146 3.854
17 C -0.591 4.591
18 H 0.103 0.897
19 C -0.199 4.199
20 N -0.571 5.571
21 Si 0.808 3.192
22 H -0.175 1.175
23 H -0.206 1.206
24 H -0.205 1.205
25 C -0.049 4.049
26 C -0.149 4.149
27 H 0.134 0.866
28 H 0.084 0.916
29 H 0.083 0.917
30 H 0.166 0.834
31 H 0.170 0.830
32 H 0.142 0.858
33 H 0.096 0.904
34 H 0.105 0.895
35 H 0.088 0.912
36 H 0.078 0.922
37 H 0.109 0.891
38 H 0.146 0.854
39 H 0.243 0.757
40 H 0.002 0.998
41 H 0.002 0.998
42 H 0.077 0.923
43 H 0.112 0.888
44 H 0.091 0.909
45 H 0.121 0.879
46 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -29.538 -4.248 4.410 30.166
hybrid contribution 0.507 -0.166 1.045 1.174
sum -29.031 -4.413 5.455 29.867
Atomic orbital electron populations
1.23320 0.76464 1.05440 1.02253 1.86040 1.23507 1.27170 1.88841
1.19191 0.92257 0.84940 0.97105 1.21491 1.01011 0.91889 1.08727
1.21195 0.93443 0.97927 0.96571 1.19819 0.93954 0.95098 1.03626
1.19519 0.95359 0.92234 0.97522 1.20465 0.92022 0.98144 1.08050
1.21556 0.91362 1.03049 0.99747 1.21606 1.01105 0.86118 0.95486
1.58942 1.13160 1.06763 1.49162 1.21979 0.87903 1.03568 0.94692
1.21548 0.89007 0.78005 0.83467 1.90619 1.84741 1.44697 1.26662
1.46190 1.07050 1.56834 1.26251 1.18471 0.77917 0.94464 0.94582
1.21674 0.92206 1.36825 1.08370 0.89704 1.26089 0.99868 0.95933
0.97963 1.70153 1.12433 1.44836 1.29657 0.85110 0.78018 0.77744
0.78324 1.17489 1.20583 1.20542 1.21915 0.86412 1.00185 0.96356
1.21541 1.00689 0.93797 0.98866 0.86608 0.91615 0.91729 0.83366
0.82979 0.85767 0.90354 0.89489 0.91162 0.92204 0.89088 0.85377
0.75721 0.99785 0.99784 0.92343 0.88782 0.90935 0.87885 0.90452
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.20 9.81 113.37 1.11 1.31 16
2 O -0.34 -6.69 10.50 -92.32 -0.97 -7.66 16
3 C 0.11 2.27 6.69 22.53 0.15 2.42 16
4 C -0.21 -3.43 9.04 22.39 0.20 -3.23 16
5 C -0.07 -1.12 9.69 22.29 0.22 -0.90 16
6 C -0.12 -2.27 5.01 -19.81 -0.10 -2.37 16
7 C -0.05 -1.00 5.00 -19.84 -0.10 -1.10 16
8 C -0.17 -3.82 9.63 22.40 0.22 -3.60 16
9 C -0.12 -2.73 5.37 30.16 0.16 -2.57 16
10 C 0.08 2.37 5.34 86.66 0.46 2.83 16
11 N -0.56 -14.80 4.07 -908.13 -3.70 -18.50 16
12 C 0.05 1.27 4.26 85.56 0.36 1.63 16
13 C 0.49 19.58 7.67 87.66 0.67 20.25 16
14 O -0.59 -29.43 14.90 -3.05 -0.05 -29.47 16
15 N -0.71 -29.86 5.55 -466.78 -2.59 -32.45 16
16 C 0.27 14.89 5.43 85.64 0.46 15.35 16
17 C -0.55 -30.15 9.28 25.60 0.24 -29.91 16
18 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16
19 C 0.00 0.04 5.46 84.65 0.46 0.50 16
20 N -0.93 -56.81 13.29 21.44 0.28 -56.52 16
21 Si 0.98 42.48 29.54 68.60 2.03 44.50 16
22 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16
23 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16
24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16
25 C 0.08 1.47 5.46 86.65 0.47 1.94 16
26 C -0.11 -1.63 5.38 30.15 0.16 -1.47 16
27 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16
28 H 0.07 0.50 7.66 -2.38 -0.02 0.49 16
29 H 0.06 0.52 7.66 -2.39 -0.02 0.50 16
30 H 0.15 1.58 6.29 -2.91 -0.02 1.56 16
31 H 0.15 1.43 7.98 -2.91 -0.02 1.40 16
32 H 0.12 2.80 7.98 -2.91 -0.02 2.78 16
33 H 0.08 1.80 7.92 -2.39 -0.02 1.78 16
34 H 0.09 1.90 4.75 -2.39 -0.01 1.89 16
35 H 0.07 1.94 7.86 -2.39 -0.02 1.92 16
36 H 0.06 2.10 6.56 -2.39 -0.02 2.09 16
37 H 0.09 2.00 4.83 -2.39 -0.01 1.99 16
38 H 0.13 2.54 7.77 -2.39 -0.02 2.52 16
39 H 0.41 13.81 8.32 -92.71 -0.77 13.04 16
40 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16
41 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16
42 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16
43 H 0.09 1.51 8.07 -2.39 -0.02 1.49 16
44 H 0.07 1.42 7.86 -2.39 -0.02 1.40 16
45 H 0.10 1.01 7.92 -2.38 -0.02 0.99 16
46 H 0.08 1.17 5.57 -2.39 -0.01 1.16 16
Total: -1.00 -76.81 363.01 0.40 -76.41
By element:
Atomic # 1 Polarization: 22.39 SS G_CDS: 0.23 Total: 22.62 kcal
Atomic # 6 Polarization: -4.08 SS G_CDS: 5.16 Total: 1.08 kcal
Atomic # 7 Polarization: -101.47 SS G_CDS: -6.00 Total: -107.48 kcal
Atomic # 8 Polarization: -36.12 SS G_CDS: -1.01 Total: -37.14 kcal
Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal
Total: -76.81 0.40 -76.41 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000760927332.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.575 kcal
(2) G-P(sol) polarization free energy of solvation -76.811 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.236 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.413 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.838 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds