Wall clock time and date at job start Tue Mar 31 2020 12:04:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46508 * 1
3 3 C 1.34772 * 119.99940 * 2 1
4 4 O 1.21278 * 120.00355 * 0.02562 * 3 2 1
5 5 C 1.50700 * 119.99772 * 180.02562 * 3 2 1
6 6 C 1.53000 * 109.47218 * 179.97438 * 5 3 2
7 7 C 1.52991 * 109.47316 * 180.02562 * 6 5 3
8 8 N 1.46507 * 109.47266 * 180.02562 * 7 6 5
9 9 C 1.46501 * 119.99673 * 269.99674 * 8 7 6
10 10 C 1.34773 * 120.00266 * 90.00082 * 8 7 6
11 11 O 1.21282 * 119.99503 * 359.97438 * 10 8 7
12 12 C 1.50694 * 120.00092 * 180.02562 * 10 8 7
13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 8
14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10
15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12
16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13
17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14
18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10
19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12
20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13
21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13
22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18
23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18
24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19
25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19
26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19
27 27 H 1.09002 * 109.47270 * 59.99760 * 1 2 3
28 28 H 1.08997 * 109.47155 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.46463 * 300.00131 * 1 2 3
30 30 H 0.97005 * 119.99498 * 180.02562 * 2 1 3
31 31 H 1.09000 * 109.47135 * 60.00120 * 5 3 2
32 32 H 1.09002 * 109.47048 * 299.99921 * 5 3 2
33 33 H 1.08996 * 109.47021 * 59.99280 * 6 5 3
34 34 H 1.09002 * 109.47053 * 299.99926 * 6 5 3
35 35 H 1.09005 * 109.47510 * 59.99841 * 7 6 5
36 36 H 1.08998 * 109.47322 * 299.99584 * 7 6 5
37 37 H 1.08995 * 109.47181 * 269.99950 * 9 8 7
38 38 H 1.09006 * 109.47212 * 30.00135 * 9 8 7
39 39 H 1.09002 * 109.46759 * 149.99698 * 9 8 7
40 40 H 1.09001 * 109.46892 * 59.99768 * 12 10 8
41 41 H 1.08991 * 109.47294 * 299.99778 * 12 10 8
42 42 H 1.07998 * 119.87840 * 0.02562 * 14 13 12
43 43 H 1.07996 * 119.74749 * 179.68975 * 15 14 13
44 44 H 1.08000 * 119.87393 * 180.02562 * 16 15 14
45 45 H 1.07996 * 120.12941 * 180.02562 * 17 16 15
46 46 H 0.96998 * 119.99709 * 354.17607 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 1.5326 2.2175 0.0005
5 6 3.6459 1.1671 -0.0006
6 6 4.1560 2.6096 -0.0011
7 6 5.6859 2.6096 -0.0023
8 7 6.1743 3.9908 -0.0022
9 6 6.4175 4.6818 -1.2709
10 6 6.3999 4.6258 1.1650
11 8 6.1982 4.0538 2.2152
12 6 6.9018 6.0467 1.1651
13 6 7.0699 6.5200 2.5859
14 6 6.0588 7.2187 3.2056
15 6 6.2135 7.6609 4.5102
16 6 7.3830 7.3997 5.2078
17 6 8.4045 6.6977 4.6104
18 6 8.2585 6.2438 3.2862
19 6 9.3012 5.5207 2.6623
20 1 9.0773 4.8373 1.8565
21 6 10.6231 5.6906 3.0888
22 7 10.9853 6.8061 3.6685
23 14 11.8708 4.3245 2.8303
24 1 13.1889 4.7501 3.3659
25 1 11.4192 3.1009 3.5402
26 1 11.9963 4.0369 1.3788
27 1 -0.3634 0.5139 -0.8900
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3632 0.5139 0.8900
30 1 1.9500 -0.8401 -0.0004
31 1 4.0089 0.6535 -0.8908
32 1 4.0096 0.6531 0.8892
33 1 3.7929 3.1236 0.8888
34 1 3.7923 3.1232 -0.8911
35 1 6.0486 2.0956 -0.8926
36 1 6.0500 2.0959 0.8874
37 1 7.4467 4.5106 -1.5864
38 1 5.7361 4.2980 -2.0302
39 1 6.2506 5.7510 -1.1401
40 1 6.1830 6.6858 0.6522
41 1 7.8613 6.0932 0.6503
42 1 5.1434 7.4272 2.6719
43 1 5.4169 8.2127 4.9870
44 1 7.4926 7.7487 6.2240
45 1 9.3144 6.4951 5.1557
46 1 10.3617 7.5468 3.7272
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000777054596.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:04:16
Heat of formation + Delta-G solvation = -69.855547 kcal
Electronic energy + Delta-G solvation = -26387.782637 eV
Core-core repulsion = 22662.407842 eV
Total energy + Delta-G solvation = -3725.374795 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-39.93892 -39.39560 -37.58638 -35.57327 -34.83466 -33.78670 -33.39476 -31.64514
-29.15234 -28.75433 -26.95980 -26.66831 -25.26865 -24.61370 -22.14599 -20.87066
-20.56447 -20.15838 -18.66118 -17.61824 -17.42026 -16.60569 -16.20079 -15.92609
-15.60891 -15.21627 -14.80258 -14.40086 -14.21649 -14.09615 -13.89403 -13.52084
-13.15032 -12.87321 -12.67030 -12.63404 -12.40031 -12.26129 -12.10390 -11.93927
-11.91667 -11.64211 -11.58274 -11.17333 -11.05022 -10.78926 -10.69692 -10.41088
-10.34815 -10.09583 -9.57122 -9.42962 -9.31711 -9.10954 -8.89824 -8.32971
-7.48445 -7.43801 -7.06136 -4.35542 2.45035 2.80103 2.90563 2.94691
3.18314 3.32577 3.34999 3.40722 3.47207 4.06620 4.50709 4.64573
4.82175 4.85890 4.92622 5.11175 5.18847 5.26122 5.37450 5.42326
5.45767 5.49797 5.60205 5.69327 5.74202 5.81495 5.95324 6.06803
6.08008 6.18676 6.25064 6.33212 6.39954 6.43389 6.74779 6.87435
7.07125 7.17524 7.27999 7.48720 7.71097 7.84824 7.89574 7.93821
7.99765 8.02377 8.27706 8.41745 8.84511 8.87368 8.99420 10.13036
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.014602 B = 0.003101 C = 0.002813
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1917.083869 B = 9025.882017 C = 9951.415982
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.087 3.913
2 N -0.741 5.741
3 C 0.511 3.489
4 O -0.536 6.536
5 C -0.137 4.137
6 C -0.119 4.119
7 C 0.117 3.883
8 N -0.631 5.631
9 C 0.082 3.918
10 C 0.517 3.483
11 O -0.519 6.519
12 C -0.068 4.068
13 C -0.184 4.184
14 C -0.069 4.069
15 C -0.253 4.253
16 C -0.087 4.087
17 C -0.216 4.216
18 C 0.116 3.884
19 C -0.516 4.516
20 H 0.071 0.929
21 C 0.040 3.960
22 N -0.800 5.800
23 Si 1.060 2.940
24 H -0.275 1.275
25 H -0.275 1.275
26 H -0.277 1.277
27 H 0.058 0.942
28 H 0.073 0.927
29 H 0.059 0.941
30 H 0.402 0.598
31 H 0.093 0.907
32 H 0.097 0.903
33 H 0.075 0.925
34 H 0.068 0.932
35 H 0.070 0.930
36 H 0.082 0.918
37 H 0.054 0.946
38 H 0.064 0.936
39 H 0.072 0.928
40 H 0.075 0.925
41 H 0.095 0.905
42 H 0.085 0.915
43 H 0.087 0.913
44 H 0.088 0.912
45 H 0.104 0.896
46 H 0.299 0.701
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.822 -12.438 -12.102 20.452
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 N -0.394 5.394
3 C 0.298 3.702
4 O -0.411 6.411
5 C -0.178 4.178
6 C -0.158 4.158
7 C -0.006 4.006
8 N -0.367 5.367
9 C -0.061 4.061
10 C 0.306 3.694
11 O -0.392 6.392
12 C -0.107 4.107
13 C -0.186 4.186
14 C -0.087 4.087
15 C -0.272 4.272
16 C -0.105 4.105
17 C -0.236 4.236
18 C 0.113 3.887
19 C -0.544 4.544
20 H 0.089 0.911
21 C -0.182 4.182
22 N -0.424 5.424
23 Si 0.884 3.116
24 H -0.199 1.199
25 H -0.201 1.201
26 H -0.203 1.203
27 H 0.077 0.923
28 H 0.092 0.908
29 H 0.077 0.923
30 H 0.235 0.765
31 H 0.112 0.888
32 H 0.115 0.885
33 H 0.094 0.906
34 H 0.086 0.914
35 H 0.089 0.911
36 H 0.101 0.899
37 H 0.072 0.928
38 H 0.083 0.917
39 H 0.091 0.909
40 H 0.093 0.907
41 H 0.113 0.887
42 H 0.104 0.896
43 H 0.105 0.895
44 H 0.106 0.894
45 H 0.122 0.878
46 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -9.772 -12.338 -11.194 19.314
hybrid contribution -1.586 -0.064 -0.354 1.626
sum -11.358 -12.402 -11.548 20.401
Atomic orbital electron populations
1.21521 0.79847 1.02045 1.02352 1.45869 1.07758 1.08890 1.76890
1.20870 0.90609 0.83430 0.75322 1.90727 1.70604 1.31318 1.48492
1.21607 0.91279 1.00362 1.04519 1.21712 0.95696 0.94402 1.04017
1.21330 0.92911 0.83621 1.02742 1.47957 1.68150 1.13924 1.06647
1.21723 1.00849 0.98069 0.85483 1.21216 0.76369 0.89286 0.82512
1.90667 1.50050 1.67576 1.30917 1.20274 1.01517 0.91167 0.97789
1.19050 0.97852 1.07774 0.93898 1.20366 0.96020 0.97677 0.94686
1.20262 0.98739 1.11784 0.96396 1.20598 0.94117 0.98357 0.97454
1.21132 0.99717 1.07002 0.95709 1.17391 0.91675 0.88898 0.90692
1.20419 0.92828 1.22856 1.18341 0.91055 1.26918 0.99355 1.00065
0.91818 1.70448 1.40119 1.02783 1.29008 0.83710 0.75403 0.75004
0.77432 1.19929 1.20079 1.20275 0.92332 0.90770 0.92251 0.76479
0.88820 0.88466 0.90605 0.91361 0.91146 0.89929 0.92770 0.91714
0.90906 0.90705 0.88715 0.89631 0.89480 0.89423 0.87778 0.88743
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.60 10.70 59.85 0.64 1.24 16
2 N -0.74 -5.69 5.71 -67.07 -0.38 -6.07 16
3 C 0.51 5.76 7.83 -10.99 -0.09 5.67 16
4 O -0.54 -8.58 15.98 5.56 0.09 -8.49 16
5 C -0.14 -1.26 5.70 -27.88 -0.16 -1.42 16
6 C -0.12 -1.51 4.83 -26.74 -0.13 -1.64 16
7 C 0.12 1.53 5.41 -4.04 -0.02 1.51 16
8 N -0.63 -9.80 2.87 -181.57 -0.52 -10.32 16
9 C 0.08 0.95 10.24 59.85 0.61 1.56 16
10 C 0.52 10.56 7.31 -10.99 -0.08 10.48 16
11 O -0.52 -12.82 15.61 5.56 0.09 -12.74 16
12 C -0.07 -1.39 3.73 -29.03 -0.11 -1.50 16
13 C -0.18 -4.55 4.43 -103.91 -0.46 -5.01 16
14 C -0.07 -1.65 9.66 -39.66 -0.38 -2.03 16
15 C -0.25 -6.02 10.05 -39.29 -0.39 -6.42 16
16 C -0.09 -2.14 10.02 -39.66 -0.40 -2.54 16
17 C -0.22 -5.82 7.95 -38.87 -0.31 -6.13 16
18 C 0.12 3.15 5.30 -106.82 -0.57 2.59 16
19 C -0.52 -13.81 8.08 -37.74 -0.30 -14.11 16
20 H 0.07 1.88 6.73 -52.49 -0.35 1.53 16
21 C 0.04 1.03 4.94 -17.34 -0.09 0.94 16
22 N -0.80 -21.46 12.31 55.55 0.68 -20.78 16
23 Si 1.06 22.14 30.00 -169.99 -5.10 17.04 16
24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16
25 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16
26 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16
27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16
29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.40 1.73 8.83 -40.82 -0.36 1.37 16
31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16
32 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16
33 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16
34 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16
35 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16
36 H 0.08 1.23 7.42 -51.93 -0.39 0.85 16
37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
38 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16
39 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16
40 H 0.07 1.31 7.31 -51.93 -0.38 0.93 16
41 H 0.09 1.91 7.02 -51.93 -0.36 1.55 16
42 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16
43 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16
44 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16
45 H 0.10 2.87 6.49 -52.49 -0.34 2.53 16
46 H 0.30 8.23 6.68 -40.82 -0.27 7.96 16
LS Contribution 382.30 15.07 5.76 5.76
Total: -1.00 -35.41 382.30 -8.69 -44.09
By element:
Atomic # 1 Polarization: 15.38 SS G_CDS: -7.07 Total: 8.31 kcal
Atomic # 6 Polarization: -14.57 SS G_CDS: -2.23 Total: -16.81 kcal
Atomic # 7 Polarization: -36.95 SS G_CDS: -0.22 Total: -37.17 kcal
Atomic # 8 Polarization: -21.40 SS G_CDS: 0.18 Total: -21.23 kcal
Atomic # 14 Polarization: 22.14 SS G_CDS: -5.10 Total: 17.04 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -35.41 -8.69 -44.09 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000777054596.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.762 kcal
(2) G-P(sol) polarization free energy of solvation -35.405 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.167 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.856 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds