Wall clock time and date at job start Tue Mar 31 2020 12:04:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46508 * 1
3 3 C 1.34772 * 119.99940 * 2 1
4 4 O 1.21278 * 120.00355 * 0.02562 * 3 2 1
5 5 C 1.50700 * 119.99772 * 180.02562 * 3 2 1
6 6 C 1.53000 * 109.47218 * 179.97438 * 5 3 2
7 7 C 1.52991 * 109.47316 * 180.02562 * 6 5 3
8 8 N 1.46507 * 109.47266 * 180.02562 * 7 6 5
9 9 C 1.46501 * 119.99673 * 269.99674 * 8 7 6
10 10 C 1.34773 * 120.00266 * 90.00082 * 8 7 6
11 11 O 1.21282 * 119.99503 * 359.97438 * 10 8 7
12 12 C 1.50694 * 120.00092 * 180.02562 * 10 8 7
13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 8
14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10
15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12
16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13
17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14
18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10
19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12
20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13
21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13
22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18
23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18
24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19
25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19
26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19
27 27 H 1.09002 * 109.47270 * 59.99760 * 1 2 3
28 28 H 1.08997 * 109.47155 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.46463 * 300.00131 * 1 2 3
30 30 H 0.97005 * 119.99498 * 180.02562 * 2 1 3
31 31 H 1.09000 * 109.47135 * 60.00120 * 5 3 2
32 32 H 1.09002 * 109.47048 * 299.99921 * 5 3 2
33 33 H 1.08996 * 109.47021 * 59.99280 * 6 5 3
34 34 H 1.09002 * 109.47053 * 299.99926 * 6 5 3
35 35 H 1.09005 * 109.47510 * 59.99841 * 7 6 5
36 36 H 1.08998 * 109.47322 * 299.99584 * 7 6 5
37 37 H 1.08995 * 109.47181 * 269.99950 * 9 8 7
38 38 H 1.09006 * 109.47212 * 30.00135 * 9 8 7
39 39 H 1.09002 * 109.46759 * 149.99698 * 9 8 7
40 40 H 1.09001 * 109.46892 * 59.99768 * 12 10 8
41 41 H 1.08991 * 109.47294 * 299.99778 * 12 10 8
42 42 H 1.07998 * 119.87840 * 0.02562 * 14 13 12
43 43 H 1.07996 * 119.74749 * 179.68975 * 15 14 13
44 44 H 1.08000 * 119.87393 * 180.02562 * 16 15 14
45 45 H 1.07996 * 120.12941 * 180.02562 * 17 16 15
46 46 H 0.96998 * 119.99709 * 354.17607 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 1.5326 2.2175 0.0005
5 6 3.6459 1.1671 -0.0006
6 6 4.1560 2.6096 -0.0011
7 6 5.6859 2.6096 -0.0023
8 7 6.1743 3.9908 -0.0022
9 6 6.4175 4.6818 -1.2709
10 6 6.3999 4.6258 1.1650
11 8 6.1982 4.0538 2.2152
12 6 6.9018 6.0467 1.1651
13 6 7.0699 6.5200 2.5859
14 6 6.0588 7.2187 3.2056
15 6 6.2135 7.6609 4.5102
16 6 7.3830 7.3997 5.2078
17 6 8.4045 6.6977 4.6104
18 6 8.2585 6.2438 3.2862
19 6 9.3012 5.5207 2.6623
20 1 9.0773 4.8373 1.8565
21 6 10.6231 5.6906 3.0888
22 7 10.9853 6.8061 3.6685
23 14 11.8708 4.3245 2.8303
24 1 13.1889 4.7501 3.3659
25 1 11.4192 3.1009 3.5402
26 1 11.9963 4.0369 1.3788
27 1 -0.3634 0.5139 -0.8900
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3632 0.5139 0.8900
30 1 1.9500 -0.8401 -0.0004
31 1 4.0089 0.6535 -0.8908
32 1 4.0096 0.6531 0.8892
33 1 3.7929 3.1236 0.8888
34 1 3.7923 3.1232 -0.8911
35 1 6.0486 2.0956 -0.8926
36 1 6.0500 2.0959 0.8874
37 1 7.4467 4.5106 -1.5864
38 1 5.7361 4.2980 -2.0302
39 1 6.2506 5.7510 -1.1401
40 1 6.1830 6.6858 0.6522
41 1 7.8613 6.0932 0.6503
42 1 5.1434 7.4272 2.6719
43 1 5.4169 8.2127 4.9870
44 1 7.4926 7.7487 6.2240
45 1 9.3144 6.4951 5.1557
46 1 10.3617 7.5468 3.7272
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000777054596.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:04:15
Heat of formation + Delta-G solvation = -93.431336 kcal
Electronic energy + Delta-G solvation = -26388.804960 eV
Core-core repulsion = 22662.407842 eV
Total energy + Delta-G solvation = -3726.397118 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.08793 -40.64845 -39.40717 -36.90152 -35.73495 -35.63722 -34.52281 -33.33207
-31.10922 -29.80296 -28.44324 -27.59453 -26.92126 -25.98399 -23.26182 -22.82511
-21.88347 -21.37224 -20.14974 -19.49561 -18.31716 -17.92642 -17.22774 -16.89308
-16.79254 -16.70757 -16.52600 -15.88704 -15.81180 -15.35609 -15.28423 -14.75747
-14.34958 -14.23078 -14.00483 -13.88383 -13.84141 -13.54924 -13.32755 -13.17558
-13.06518 -12.97616 -12.78014 -12.63633 -12.61824 -12.56183 -12.23428 -11.96857
-11.71316 -11.47691 -11.21052 -11.03224 -10.83572 -10.71890 -10.15902 -9.58725
-9.45339 -9.42623 -9.05314 -6.38923 0.90734 0.98190 1.48128 1.60950
1.63592 1.78008 1.78788 2.11053 2.32922 2.38717 2.71993 3.54205
3.77193 3.87391 4.00711 4.07279 4.24416 4.25671 4.36418 4.39155
4.46915 4.49228 4.55121 4.56108 4.59462 4.65553 4.68725 4.70800
4.82942 4.91344 4.91660 5.00222 5.07128 5.11737 5.26154 5.32414
5.43775 5.49792 5.72025 5.79391 5.84152 5.98254 6.04493 6.29166
6.42988 6.48071 6.53939 6.87044 7.02179 7.25856 7.36465 8.08985
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.014602 B = 0.003101 C = 0.002813
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1917.083869 B = 9025.882017 C = 9951.415982
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.082 3.918
2 N -0.725 5.725
3 C 0.503 3.497
4 O -0.594 6.594
5 C -0.129 4.129
6 C -0.109 4.109
7 C 0.115 3.885
8 N -0.623 5.623
9 C 0.072 3.928
10 C 0.513 3.487
11 O -0.575 6.575
12 C -0.066 4.066
13 C -0.190 4.190
14 C -0.083 4.083
15 C -0.252 4.252
16 C -0.096 4.096
17 C -0.245 4.245
18 C 0.086 3.914
19 C -0.538 4.538
20 H 0.068 0.932
21 C 0.004 3.996
22 N -0.819 5.819
23 Si 1.109 2.891
24 H -0.270 1.270
25 H -0.274 1.274
26 H -0.251 1.251
27 H 0.049 0.951
28 H 0.113 0.887
29 H 0.041 0.959
30 H 0.421 0.579
31 H 0.137 0.863
32 H 0.108 0.892
33 H 0.026 0.974
34 H 0.069 0.931
35 H 0.117 0.883
36 H 0.060 0.940
37 H 0.067 0.933
38 H 0.097 0.903
39 H 0.075 0.925
40 H 0.105 0.895
41 H 0.095 0.905
42 H 0.113 0.887
43 H 0.117 0.883
44 H 0.110 0.890
45 H 0.085 0.915
46 H 0.283 0.717
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.354 -14.420 -14.595 23.449
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 N -0.378 5.378
3 C 0.291 3.709
4 O -0.475 6.475
5 C -0.169 4.169
6 C -0.148 4.148
7 C -0.007 4.007
8 N -0.357 5.357
9 C -0.070 4.070
10 C 0.302 3.698
11 O -0.454 6.454
12 C -0.105 4.105
13 C -0.192 4.192
14 C -0.102 4.102
15 C -0.271 4.271
16 C -0.115 4.115
17 C -0.264 4.264
18 C 0.083 3.917
19 C -0.566 4.566
20 H 0.086 0.914
21 C -0.212 4.212
22 N -0.443 5.443
23 Si 0.927 3.073
24 H -0.195 1.195
25 H -0.200 1.200
26 H -0.174 1.174
27 H 0.068 0.932
28 H 0.131 0.869
29 H 0.060 0.940
30 H 0.258 0.742
31 H 0.155 0.845
32 H 0.127 0.873
33 H 0.045 0.955
34 H 0.088 0.912
35 H 0.135 0.865
36 H 0.078 0.922
37 H 0.086 0.914
38 H 0.116 0.884
39 H 0.093 0.907
40 H 0.123 0.877
41 H 0.113 0.887
42 H 0.131 0.869
43 H 0.135 0.865
44 H 0.128 0.872
45 H 0.103 0.897
46 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -10.319 -14.363 -13.753 22.404
hybrid contribution -1.599 0.566 0.386 1.740
sum -11.919 -13.798 -13.367 22.607
Atomic orbital electron populations
1.21649 0.79308 1.04175 1.01081 1.45784 1.08257 1.08820 1.74906
1.21282 0.91533 0.83465 0.74577 1.90705 1.71761 1.33471 1.51514
1.21595 0.89804 0.98404 1.07099 1.21540 0.95261 0.96414 1.01605
1.21543 0.93032 0.82277 1.03835 1.48002 1.66256 1.14863 1.06574
1.22049 1.02605 0.98182 0.84114 1.21125 0.76214 0.89199 0.83230
1.90639 1.52937 1.68631 1.33192 1.20268 1.02465 0.92223 0.95548
1.19553 0.97058 1.06705 0.95898 1.20782 0.96877 0.97363 0.95138
1.20690 0.98948 1.10959 0.96521 1.20889 0.93967 0.97947 0.98663
1.21153 0.99990 1.09055 0.96231 1.17781 0.93073 0.89633 0.91179
1.20518 0.93519 1.23491 1.19080 0.91401 1.28289 1.01102 1.01218
0.90633 1.70555 1.39678 1.03132 1.30898 0.83118 0.73193 0.72097
0.78927 1.19467 1.19980 1.17447 0.93193 0.86898 0.94031 0.74190
0.84514 0.87350 0.95536 0.91240 0.86508 0.92158 0.91450 0.88408
0.90659 0.87666 0.88681 0.86921 0.86495 0.87167 0.89680 0.90449
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.01 10.70 127.77 1.37 2.38 16
2 N -0.73 -9.58 5.71 -484.51 -2.77 -12.35 16
3 C 0.50 10.77 7.83 87.66 0.69 11.45 16
4 O -0.59 -19.32 15.98 -3.02 -0.05 -19.37 16
5 C -0.13 -2.06 5.70 29.85 0.17 -1.89 16
6 C -0.11 -2.65 4.83 30.59 0.15 -2.50 16
7 C 0.12 2.78 5.41 86.37 0.47 3.25 16
8 N -0.62 -18.39 2.87 -846.76 -2.43 -20.83 16
9 C 0.07 1.44 10.24 127.77 1.31 2.75 16
10 C 0.51 20.98 7.31 87.66 0.64 21.62 16
11 O -0.58 -29.33 15.61 -3.04 -0.05 -29.37 16
12 C -0.07 -2.66 3.73 29.10 0.11 -2.55 16
13 C -0.19 -9.55 4.43 -19.40 -0.09 -9.63 16
14 C -0.08 -3.95 9.66 22.22 0.21 -3.73 16
15 C -0.25 -11.87 10.05 22.46 0.23 -11.65 16
16 C -0.10 -4.83 10.02 22.22 0.22 -4.60 16
17 C -0.24 -13.73 7.95 22.73 0.18 -13.54 16
18 C 0.09 4.82 5.30 -21.29 -0.11 4.70 16
19 C -0.54 -29.61 8.08 23.46 0.19 -29.42 16
20 H 0.07 3.67 6.73 -2.91 -0.02 3.65 16
21 C 0.00 0.19 4.94 85.25 0.42 0.61 16
22 N -0.82 -45.47 12.31 21.82 0.27 -45.20 16
23 Si 1.11 44.74 30.00 68.60 2.06 46.80 16
24 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16
25 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16
26 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16
27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16
28 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16
29 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16
30 H 0.42 2.24 8.83 -92.70 -0.82 1.43 16
31 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16
32 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16
33 H 0.03 0.90 8.10 -2.39 -0.02 0.88 16
34 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16
35 H 0.12 1.77 8.07 -2.38 -0.02 1.75 16
36 H 0.06 1.76 7.42 -2.39 -0.02 1.74 16
37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16
38 H 0.10 1.34 8.07 -2.38 -0.02 1.32 16
39 H 0.07 1.48 6.44 -2.39 -0.02 1.46 16
40 H 0.11 3.52 7.31 -2.39 -0.02 3.50 16
41 H 0.10 3.82 7.02 -2.39 -0.02 3.80 16
42 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16
43 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16
44 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16
45 H 0.09 4.97 6.49 -2.91 -0.02 4.95 16
46 H 0.28 16.39 6.68 -92.71 -0.62 15.77 16
Total: -1.00 -83.39 382.30 3.49 -79.90
By element:
Atomic # 1 Polarization: 32.88 SS G_CDS: 0.31 Total: 33.19 kcal
Atomic # 6 Polarization: -38.92 SS G_CDS: 6.15 Total: -32.77 kcal
Atomic # 7 Polarization: -73.44 SS G_CDS: -4.93 Total: -78.38 kcal
Atomic # 8 Polarization: -48.65 SS G_CDS: -0.10 Total: -48.74 kcal
Atomic # 14 Polarization: 44.74 SS G_CDS: 2.06 Total: 46.80 kcal
Total: -83.39 3.49 -79.90 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000777054596.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.535 kcal
(2) G-P(sol) polarization free energy of solvation -83.391 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.926 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.896 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.431 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds