Wall clock time and date at job start Tue Mar 31 2020 12:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35901 * 117.00272 * 2 1 4 4 C 1.38754 * 120.05450 * 0.25955 * 3 2 1 5 5 C 1.38117 * 119.94658 * 180.27180 * 4 3 2 6 6 C 1.38293 * 120.05505 * 359.72713 * 5 4 3 7 7 C 1.38248 * 120.11121 * 0.02562 * 6 5 4 8 8 C 1.38167 * 120.05338 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.02894 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.70408 * 219.14153 * 9 8 7 11 11 C 1.53200 * 109.58518 * 339.49542 * 9 8 7 12 12 C 1.53035 * 109.31027 * 174.42220 * 11 9 8 13 13 C 1.53074 * 109.65839 * 298.69792 * 12 11 9 14 14 C 1.53191 * 109.29589 * 61.15989 * 13 12 11 15 15 N 1.46928 * 109.58488 * 98.78339 * 9 8 7 16 16 C 1.34769 * 120.63275 * 6.62852 * 15 9 8 17 17 O 1.21585 * 119.99985 * 354.64411 * 16 15 9 18 18 N 1.34773 * 120.00086 * 174.64169 * 16 15 9 19 19 C 1.46503 * 120.00411 * 185.07668 * 18 16 15 20 20 C 1.50700 * 109.47538 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99477 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00105 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00174 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00079 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46933 * 90.00137 * 24 22 20 26 26 H 1.48499 * 109.47114 * 210.00184 * 24 22 20 27 27 H 1.48496 * 109.46954 * 330.00126 * 24 22 20 28 28 H 1.09010 * 109.47534 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47090 * 299.99613 * 1 2 3 30 30 H 1.08995 * 109.47546 * 59.99473 * 1 2 3 31 31 H 1.08006 * 120.02582 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.97645 * 179.74242 * 5 4 3 33 33 H 1.07999 * 119.94582 * 180.02562 * 6 5 4 34 34 H 1.07999 * 119.97537 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.49569 * 294.37510 * 11 9 8 36 36 H 1.08997 * 109.49322 * 54.43654 * 11 9 8 37 37 H 1.09001 * 109.46338 * 58.65613 * 12 11 9 38 38 H 1.08999 * 109.45921 * 178.63140 * 12 11 9 39 39 H 1.08996 * 109.39401 * 301.27726 * 13 12 11 40 40 H 1.09003 * 109.62386 * 181.17260 * 13 12 11 41 41 H 1.09000 * 109.58538 * 185.72258 * 14 13 12 42 42 H 1.08993 * 109.58979 * 65.43639 * 14 13 12 43 43 H 0.97003 * 120.00340 * 5.07670 * 18 16 15 44 44 H 1.09008 * 109.46540 * 300.00021 * 19 18 16 45 45 H 1.08994 * 109.46937 * 59.99531 * 19 18 16 46 46 H 0.96999 * 120.00148 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0054 5 6 1.9208 3.6047 -0.0002 6 6 3.3019 3.6758 -0.0057 7 6 4.0560 2.5171 -0.0059 8 6 3.4311 1.2848 -0.0002 9 6 4.2536 0.0221 -0.0011 10 1 3.7844 -0.7217 -0.6450 11 6 5.6644 0.3286 -0.5139 12 6 6.5340 -0.9238 -0.3817 13 6 6.6328 -1.3290 1.0911 14 6 5.2326 -1.6508 1.6227 15 7 4.3516 -0.5028 1.3677 16 6 3.6465 0.0576 2.3702 17 8 2.9969 1.0652 2.1673 18 7 3.6612 -0.4988 3.5976 19 6 2.8088 0.0439 4.6583 20 6 3.0123 -0.7509 5.9224 21 1 3.7068 -1.5779 5.9343 22 6 2.3119 -0.4222 7.0636 23 7 1.4666 0.5852 7.0492 24 14 2.5636 -1.4079 8.6304 25 1 3.6595 -0.7999 9.4269 26 1 1.3101 -1.4006 9.4265 27 1 2.9212 -2.8067 8.2831 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.2128 2.3203 0.0101 32 1 1.3339 4.5114 -0.0002 33 1 3.7922 4.6380 -0.0097 34 1 5.1344 2.5751 -0.0106 35 1 5.6139 0.6277 -1.5608 36 1 6.0978 1.1369 0.0750 37 1 6.0865 -1.7384 -0.9512 38 1 7.5316 -0.7155 -0.7684 39 1 7.0598 -0.5065 1.6649 40 1 7.2693 -2.2087 1.1868 41 1 5.2836 -1.8411 2.6947 42 1 4.8418 -2.5316 1.1133 43 1 4.2362 -1.2588 3.7788 44 1 3.0724 1.0862 4.8385 45 1 1.7644 -0.0192 4.3531 46 1 0.9741 0.8166 7.8522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:06 Heat of formation + Delta-G solvation = -21.903225 kcal Electronic energy + Delta-G solvation = -28336.518066 eV Core-core repulsion = 24613.222640 eV Total energy + Delta-G solvation = -3723.295426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.61325 -39.03624 -37.25321 -36.71726 -34.23815 -32.88837 -32.46298 -31.68320 -29.63630 -29.06666 -27.15236 -26.87668 -24.84892 -23.73489 -22.55869 -21.80565 -20.99180 -20.34672 -19.01122 -17.95488 -17.40805 -16.04429 -15.88143 -15.71964 -15.31992 -15.13218 -14.95795 -14.63792 -14.28493 -13.98054 -13.91742 -13.78536 -13.45203 -13.16003 -12.99820 -12.67302 -12.32575 -12.14870 -11.85662 -11.72548 -11.67198 -11.52369 -11.11523 -10.97995 -10.90026 -10.84967 -10.70446 -10.63413 -10.57395 -10.26878 -10.21838 -9.51868 -9.30628 -8.67165 -8.30848 -8.06976 -7.59830 -7.17863 -6.11294 -4.17289 1.81772 2.00814 3.26533 3.31040 3.33751 3.38937 3.67710 4.07136 4.30361 4.37005 4.67069 4.76639 4.84355 4.96977 5.08181 5.18170 5.24694 5.29867 5.33433 5.38944 5.43540 5.47912 5.58407 5.62570 5.70571 5.75018 5.80430 5.83573 5.90915 5.94647 6.02035 6.06798 6.14463 6.34835 6.45712 6.78435 6.86347 6.92695 7.00822 7.25717 7.26292 7.59958 7.65401 7.66836 7.84949 7.96438 8.09851 8.83265 9.03653 9.42906 9.60321 10.98894 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012010 B = 0.004676 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.899737 B = 5986.174129 C = 7244.949776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.315 6.315 3 C 0.174 3.826 4 C -0.206 4.206 5 C -0.089 4.089 6 C -0.157 4.157 7 C -0.087 4.087 8 C -0.061 4.061 9 C 0.214 3.786 10 H 0.075 0.925 11 C -0.134 4.134 12 C -0.116 4.116 13 C -0.135 4.135 14 C 0.114 3.886 15 N -0.631 5.631 16 C 0.697 3.303 17 O -0.570 6.570 18 N -0.733 5.733 19 C 0.271 3.729 20 C -0.539 4.539 21 H 0.060 0.940 22 C 0.064 3.936 23 N -0.886 5.886 24 Si 0.902 3.098 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.273 1.273 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.382 0.618 44 H 0.023 0.977 45 H 0.020 0.980 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.138 -1.811 -18.040 19.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.228 6.228 3 C 0.128 3.872 4 C -0.225 4.225 5 C -0.108 4.108 6 C -0.176 4.176 7 C -0.106 4.106 8 C -0.063 4.063 9 C 0.110 3.890 10 H 0.093 0.907 11 C -0.172 4.172 12 C -0.154 4.154 13 C -0.174 4.174 14 C -0.010 4.010 15 N -0.370 5.370 16 C 0.399 3.601 17 O -0.448 6.448 18 N -0.388 5.388 19 C 0.150 3.850 20 C -0.578 4.578 21 H 0.078 0.922 22 C -0.140 4.140 23 N -0.523 5.523 24 Si 0.729 3.271 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.198 1.198 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.217 0.783 44 H 0.041 0.959 45 H 0.038 0.962 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.546 -1.176 -18.001 18.873 hybrid contribution 0.031 -0.711 1.324 1.503 sum 5.577 -1.887 -16.677 17.686 Atomic orbital electron populations 1.22936 0.79098 1.03242 1.00989 1.86008 1.20793 1.27466 1.88561 1.18477 0.91445 0.83761 0.93498 1.20921 0.99113 0.92557 1.09940 1.20664 0.94577 0.96414 0.99139 1.20741 0.93865 0.97597 1.05365 1.20607 0.99019 0.91175 0.99798 1.18628 0.90219 0.94371 1.03040 1.19580 0.93769 0.92868 0.82759 0.90704 1.22107 0.95297 0.98455 1.01329 1.21487 0.99693 0.97756 0.96433 1.21933 0.96930 1.01890 0.96606 1.21531 0.89620 0.88770 1.01117 1.47354 1.48081 1.34521 1.07069 1.16120 0.80135 0.83202 0.80662 1.90980 1.47602 1.25391 1.80853 1.45947 1.47131 1.35709 1.09983 1.18875 0.89070 0.94442 0.82598 1.21235 1.25358 1.15999 0.95183 0.92157 1.24930 0.94827 0.95230 0.98986 1.69983 1.25921 1.27400 1.29044 0.86445 0.77662 0.80219 0.82746 1.20505 1.21056 1.19799 0.88916 0.92566 0.93376 0.86579 0.86980 0.87044 0.86290 0.90848 0.90929 0.91898 0.91860 0.91449 0.91002 0.90156 0.91964 0.78350 0.95940 0.96203 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 16 2 O -0.32 -5.51 9.70 -23.73 -0.23 -5.74 16 3 C 0.17 3.13 4.35 -39.22 -0.17 2.95 16 4 C -0.21 -3.50 9.04 -39.43 -0.36 -3.86 16 5 C -0.09 -1.43 10.04 -39.61 -0.40 -1.82 16 6 C -0.16 -2.46 10.04 -39.56 -0.40 -2.86 16 7 C -0.09 -1.39 8.76 -39.60 -0.35 -1.74 16 8 C -0.06 -1.04 3.08 -104.47 -0.32 -1.37 16 9 C 0.21 3.17 2.80 -68.75 -0.19 2.98 16 10 H 0.08 1.09 7.83 -51.93 -0.41 0.68 16 11 C -0.13 -1.52 4.59 -26.61 -0.12 -1.64 16 12 C -0.12 -1.10 5.88 -26.67 -0.16 -1.26 16 13 C -0.14 -1.40 6.09 -26.59 -0.16 -1.56 16 14 C 0.11 1.46 6.38 -3.71 -0.02 1.44 16 15 N -0.63 -10.43 2.97 -172.23 -0.51 -10.95 16 16 C 0.70 14.93 8.17 -86.93 -0.71 14.22 16 17 O -0.57 -13.82 11.27 0.99 0.01 -13.81 16 18 N -0.73 -16.47 5.46 -66.41 -0.36 -16.84 16 19 C 0.27 7.46 5.43 -5.19 -0.03 7.43 16 20 C -0.54 -15.00 9.28 -34.44 -0.32 -15.32 16 21 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 22 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 24 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 28 H 0.09 1.07 8.14 -51.92 -0.42 0.64 16 29 H 0.06 0.84 7.65 -51.93 -0.40 0.44 16 30 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 31 H 0.12 1.75 6.30 -52.48 -0.33 1.42 16 32 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.12 1.65 5.86 -52.49 -0.31 1.35 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.89 6.32 -51.93 -0.33 0.56 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.06 5.65 -51.93 -0.29 0.77 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.38 7.57 5.81 -40.82 -0.24 7.33 16 44 H 0.02 0.69 8.14 -51.92 -0.42 0.27 16 45 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 361.14 15.07 5.44 5.44 Total: -1.00 -33.80 361.14 -9.63 -43.43 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.88 Total: 7.39 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.81 Total: 0.73 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.14 Total: -53.61 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.22 Total: -19.55 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.80 -9.63 -43.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.523 kcal (2) G-P(sol) polarization free energy of solvation -33.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds