Wall clock time and date at job start Tue Mar 31 2020 12:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35901 * 117.00272 * 2 1 4 4 C 1.38754 * 120.05450 * 0.25955 * 3 2 1 5 5 C 1.38117 * 119.94658 * 180.27180 * 4 3 2 6 6 C 1.38293 * 120.05505 * 359.72713 * 5 4 3 7 7 C 1.38248 * 120.11121 * 0.02562 * 6 5 4 8 8 C 1.38167 * 120.05338 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.02894 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.70408 * 219.14153 * 9 8 7 11 11 C 1.53200 * 109.58518 * 339.49542 * 9 8 7 12 12 C 1.53035 * 109.31027 * 174.42220 * 11 9 8 13 13 C 1.53074 * 109.65839 * 298.69792 * 12 11 9 14 14 C 1.53191 * 109.29589 * 61.15989 * 13 12 11 15 15 N 1.46928 * 109.58488 * 98.78339 * 9 8 7 16 16 C 1.34769 * 120.63275 * 6.62852 * 15 9 8 17 17 O 1.21585 * 119.99985 * 354.64411 * 16 15 9 18 18 N 1.34773 * 120.00086 * 174.64169 * 16 15 9 19 19 C 1.46503 * 120.00411 * 185.07668 * 18 16 15 20 20 C 1.50700 * 109.47538 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99477 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00105 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00174 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00079 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46933 * 90.00137 * 24 22 20 26 26 H 1.48499 * 109.47114 * 210.00184 * 24 22 20 27 27 H 1.48496 * 109.46954 * 330.00126 * 24 22 20 28 28 H 1.09010 * 109.47534 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47090 * 299.99613 * 1 2 3 30 30 H 1.08995 * 109.47546 * 59.99473 * 1 2 3 31 31 H 1.08006 * 120.02582 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.97645 * 179.74242 * 5 4 3 33 33 H 1.07999 * 119.94582 * 180.02562 * 6 5 4 34 34 H 1.07999 * 119.97537 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.49569 * 294.37510 * 11 9 8 36 36 H 1.08997 * 109.49322 * 54.43654 * 11 9 8 37 37 H 1.09001 * 109.46338 * 58.65613 * 12 11 9 38 38 H 1.08999 * 109.45921 * 178.63140 * 12 11 9 39 39 H 1.08996 * 109.39401 * 301.27726 * 13 12 11 40 40 H 1.09003 * 109.62386 * 181.17260 * 13 12 11 41 41 H 1.09000 * 109.58538 * 185.72258 * 14 13 12 42 42 H 1.08993 * 109.58979 * 65.43639 * 14 13 12 43 43 H 0.97003 * 120.00340 * 5.07670 * 18 16 15 44 44 H 1.09008 * 109.46540 * 300.00021 * 19 18 16 45 45 H 1.08994 * 109.46937 * 59.99531 * 19 18 16 46 46 H 0.96999 * 120.00148 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0054 5 6 1.9208 3.6047 -0.0002 6 6 3.3019 3.6758 -0.0057 7 6 4.0560 2.5171 -0.0059 8 6 3.4311 1.2848 -0.0002 9 6 4.2536 0.0221 -0.0011 10 1 3.7844 -0.7217 -0.6450 11 6 5.6644 0.3286 -0.5139 12 6 6.5340 -0.9238 -0.3817 13 6 6.6328 -1.3290 1.0911 14 6 5.2326 -1.6508 1.6227 15 7 4.3516 -0.5028 1.3677 16 6 3.6465 0.0576 2.3702 17 8 2.9969 1.0652 2.1673 18 7 3.6612 -0.4988 3.5976 19 6 2.8088 0.0439 4.6583 20 6 3.0123 -0.7509 5.9224 21 1 3.7068 -1.5779 5.9343 22 6 2.3119 -0.4222 7.0636 23 7 1.4666 0.5852 7.0492 24 14 2.5636 -1.4079 8.6304 25 1 3.6595 -0.7999 9.4269 26 1 1.3101 -1.4006 9.4265 27 1 2.9212 -2.8067 8.2831 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.2128 2.3203 0.0101 32 1 1.3339 4.5114 -0.0002 33 1 3.7922 4.6380 -0.0097 34 1 5.1344 2.5751 -0.0106 35 1 5.6139 0.6277 -1.5608 36 1 6.0978 1.1369 0.0750 37 1 6.0865 -1.7384 -0.9512 38 1 7.5316 -0.7155 -0.7684 39 1 7.0598 -0.5065 1.6649 40 1 7.2693 -2.2087 1.1868 41 1 5.2836 -1.8411 2.6947 42 1 4.8418 -2.5316 1.1133 43 1 4.2362 -1.2588 3.7788 44 1 3.0724 1.0862 4.8385 45 1 1.7644 -0.0192 4.3531 46 1 0.9741 0.8166 7.8522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787359410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:05 Heat of formation + Delta-G solvation = -43.228026 kcal Electronic energy + Delta-G solvation = -28337.442779 eV Core-core repulsion = 24613.222640 eV Total energy + Delta-G solvation = -3724.220139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.93420 -40.39183 -38.61917 -37.93388 -36.12402 -34.63313 -33.60774 -33.28780 -30.87979 -30.16848 -29.15667 -28.06364 -26.16636 -24.86007 -24.43658 -23.03443 -22.19653 -21.65739 -20.54668 -19.32204 -18.75599 -17.98256 -17.23604 -17.12176 -16.65572 -16.60440 -16.31045 -16.20718 -15.34956 -15.24124 -15.20152 -15.13258 -14.71658 -14.59518 -14.29328 -14.10575 -13.92571 -13.61668 -13.35214 -13.30385 -12.87979 -12.81730 -12.71562 -12.62312 -12.22760 -12.07643 -11.94096 -11.92473 -11.62898 -11.51506 -11.47188 -11.33536 -11.02705 -10.78925 -9.88349 -9.43507 -9.25518 -8.53977 -8.28317 -6.45002 0.55468 0.73775 1.41455 1.44495 1.55470 1.94360 2.38151 2.43281 2.48762 3.00670 3.06212 3.33113 3.71828 3.85031 3.92555 4.07273 4.14341 4.21919 4.26588 4.29355 4.33278 4.42131 4.53707 4.58750 4.63540 4.64696 4.72128 4.87113 4.98239 4.99984 5.04987 5.14667 5.20188 5.21674 5.27710 5.29989 5.48571 5.49233 5.55948 5.65270 5.69928 5.75497 5.83364 5.89483 6.05597 6.23318 6.60547 6.67442 7.25108 7.32960 7.89092 8.83759 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012010 B = 0.004676 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.899737 B = 5986.174129 C = 7244.949776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.334 6.334 3 C 0.151 3.849 4 C -0.227 4.227 5 C -0.101 4.101 6 C -0.168 4.168 7 C -0.095 4.095 8 C -0.080 4.080 9 C 0.209 3.791 10 H 0.078 0.922 11 C -0.126 4.126 12 C -0.111 4.111 13 C -0.128 4.128 14 C 0.104 3.896 15 N -0.622 5.622 16 C 0.690 3.310 17 O -0.604 6.604 18 N -0.732 5.732 19 C 0.297 3.703 20 C -0.554 4.554 21 H 0.079 0.921 22 C 0.005 3.995 23 N -0.930 5.930 24 Si 0.985 3.015 25 H -0.270 1.270 26 H -0.283 1.283 27 H -0.256 1.256 28 H 0.114 0.886 29 H 0.034 0.966 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.396 0.604 44 H -0.021 1.021 45 H -0.022 1.022 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.305 -3.564 -18.621 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.248 6.248 3 C 0.106 3.894 4 C -0.246 4.246 5 C -0.120 4.120 6 C -0.186 4.186 7 C -0.113 4.113 8 C -0.081 4.081 9 C 0.107 3.893 10 H 0.096 0.904 11 C -0.164 4.164 12 C -0.149 4.149 13 C -0.166 4.166 14 C -0.019 4.019 15 N -0.360 5.360 16 C 0.392 3.608 17 O -0.485 6.485 18 N -0.389 5.389 19 C 0.174 3.826 20 C -0.592 4.592 21 H 0.097 0.903 22 C -0.194 4.194 23 N -0.569 5.569 24 Si 0.808 3.192 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.179 1.179 28 H 0.132 0.868 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.233 0.767 44 H -0.003 1.003 45 H -0.005 1.005 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.766 -2.970 -18.646 20.416 hybrid contribution -0.690 -0.118 1.410 1.574 sum 7.076 -3.088 -17.236 18.886 Atomic orbital electron populations 1.23115 0.77682 1.04693 1.01091 1.85953 1.22420 1.27706 1.88730 1.18819 0.92329 0.84082 0.94200 1.21217 0.99855 0.93058 1.10433 1.21027 0.95278 0.96924 0.98745 1.21136 0.93990 0.98746 1.04713 1.20957 1.00145 0.91102 0.99130 1.19000 0.90350 0.95718 1.03070 1.19830 0.95836 0.92064 0.81593 0.90421 1.22076 0.93036 0.99340 1.01997 1.21498 1.00538 0.96965 0.95871 1.21910 0.95119 1.02688 0.96929 1.21858 0.90735 0.87986 1.01279 1.47377 1.47205 1.34870 1.06563 1.16342 0.80398 0.83053 0.81046 1.90962 1.49009 1.26927 1.81571 1.45604 1.47125 1.36358 1.09788 1.18210 0.87507 0.92551 0.84359 1.21586 1.25868 1.16465 0.95277 0.90284 1.26050 0.94052 0.96211 1.03127 1.70152 1.27020 1.29361 1.30379 0.85163 0.77687 0.79048 0.77347 1.19561 1.20834 1.17939 0.86821 0.94719 0.90942 0.85757 0.84832 0.84643 0.84409 0.88903 0.91873 0.90658 0.89539 0.92749 0.88140 0.90842 0.90116 0.76730 1.00331 1.00455 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.81 113.37 1.11 1.93 16 2 O -0.33 -12.07 9.70 -88.32 -0.86 -12.92 16 3 C 0.15 5.62 4.35 22.51 0.10 5.71 16 4 C -0.23 -7.99 9.04 22.36 0.20 -7.79 16 5 C -0.10 -3.28 10.04 22.25 0.22 -3.06 16 6 C -0.17 -5.22 10.04 22.29 0.22 -4.99 16 7 C -0.09 -3.02 8.76 22.26 0.19 -2.82 16 8 C -0.08 -2.75 3.08 -19.77 -0.06 -2.82 16 9 C 0.21 6.04 2.80 44.23 0.12 6.17 16 10 H 0.08 2.19 7.83 -2.39 -0.02 2.17 16 11 C -0.13 -2.58 4.59 30.67 0.14 -2.44 16 12 C -0.11 -1.70 5.88 30.63 0.18 -1.52 16 13 C -0.13 -2.26 6.09 30.68 0.19 -2.08 16 14 C 0.10 2.49 6.38 86.36 0.55 3.04 16 15 N -0.62 -20.34 2.97 -817.07 -2.43 -22.77 16 16 C 0.69 30.44 8.17 179.06 1.46 31.91 16 17 O -0.60 -30.72 11.27 0.13 0.00 -30.72 16 18 N -0.73 -33.97 5.46 -482.30 -2.63 -36.61 16 19 C 0.30 17.21 5.43 85.63 0.47 17.67 16 20 C -0.55 -31.32 9.28 25.60 0.24 -31.08 16 21 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 22 C 0.01 0.29 5.46 84.65 0.46 0.75 16 23 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 24 Si 0.98 43.25 29.54 68.60 2.03 45.27 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 27 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 28 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 29 H 0.03 1.10 7.65 -2.38 -0.02 1.09 16 30 H 0.07 1.65 7.67 -2.39 -0.02 1.63 16 31 H 0.12 3.94 6.30 -2.91 -0.02 3.92 16 32 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 34 H 0.14 3.70 5.86 -2.91 -0.02 3.68 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.42 6.32 -2.39 -0.02 1.41 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.85 5.65 -2.39 -0.01 1.83 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.40 15.79 5.81 -92.71 -0.54 15.25 16 44 H -0.02 -1.39 8.14 -2.38 -0.02 -1.41 16 45 H -0.02 -1.47 8.14 -2.39 -0.02 -1.49 16 46 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -77.20 361.14 2.65 -74.56 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.45 Total: 31.81 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 5.80 Total: 8.59 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -4.78 Total: -116.58 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -0.86 Total: -43.64 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -77.20 2.65 -74.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.327 kcal (2) G-P(sol) polarization free energy of solvation -77.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds