Wall clock time and date at job start Tue Mar 31 2020 12:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 116.99992 * 2 1 4 4 C 1.38751 * 120.05755 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94418 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05656 * 359.72316 * 5 4 3 7 7 C 1.38251 * 120.10575 * 0.54799 * 6 5 4 8 8 C 1.50705 * 119.96863 * 179.72738 * 7 6 5 9 9 C 1.53001 * 109.46958 * 270.80372 * 8 7 6 10 10 H 1.09004 * 109.99447 * 304.59647 * 9 8 7 11 11 C 1.54321 * 109.88449 * 65.68895 * 9 8 7 12 12 C 1.55164 * 103.10079 * 141.70081 * 11 9 8 13 13 C 1.54914 * 101.58079 * 324.40969 * 12 11 9 14 14 N 1.47431 * 104.82870 * 37.01102 * 13 12 11 15 15 C 1.34776 * 125.64688 * 155.91395 * 14 13 12 16 16 O 1.21580 * 120.00288 * 174.43455 * 15 14 13 17 17 N 1.34776 * 119.99959 * 354.43075 * 15 14 13 18 18 C 1.46498 * 120.00189 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47316 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00052 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99928 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00179 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99941 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47082 * 89.99613 * 23 21 19 25 25 H 1.48503 * 109.47051 * 209.99651 * 23 21 19 26 26 H 1.48498 * 109.47037 * 329.99767 * 23 21 19 27 27 C 1.38164 * 120.05875 * 359.45190 * 7 6 5 28 28 H 1.09003 * 109.47186 * 300.00455 * 1 2 3 29 29 H 1.09006 * 109.46625 * 59.99789 * 1 2 3 30 30 H 1.08992 * 109.47873 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.03106 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.97536 * 180.02562 * 5 4 3 33 33 H 1.07997 * 119.94964 * 180.29533 * 6 5 4 34 34 H 1.08997 * 109.47304 * 150.80654 * 8 7 6 35 35 H 1.09000 * 109.47015 * 30.79863 * 8 7 6 36 36 H 1.09000 * 110.71834 * 23.25494 * 11 9 8 37 37 H 1.09000 * 110.72691 * 260.14946 * 11 9 8 38 38 H 1.08998 * 111.00587 * 82.48464 * 12 11 9 39 39 H 1.09002 * 111.00234 * 206.33957 * 12 11 9 40 40 H 1.09001 * 110.36457 * 155.84724 * 13 12 11 41 41 H 1.08999 * 110.37072 * 278.06206 * 13 12 11 42 42 H 0.97002 * 120.00208 * 359.97438 * 17 15 14 43 43 H 1.08999 * 109.47021 * 300.00263 * 18 17 15 44 44 H 1.09002 * 109.47141 * 60.00374 * 18 17 15 45 45 H 0.96999 * 119.99658 * 180.02562 * 22 21 19 46 46 H 1.07996 * 120.02826 * 180.24925 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 0.0047 7 6 4.0560 2.5169 -0.0004 8 6 5.5609 2.5980 -0.0003 9 6 6.0688 2.6518 -1.4425 10 1 5.6901 1.7971 -2.0032 11 6 5.6093 3.9640 -2.1122 12 6 6.8341 4.3657 -2.9759 13 6 8.0110 3.9041 -2.0805 14 7 7.5435 2.6515 -1.4592 15 6 8.3332 1.6681 -0.9840 16 8 7.8412 0.7223 -0.3995 17 7 9.6682 1.7331 -1.1567 18 6 10.5265 0.6639 -0.6407 19 6 11.9654 0.9753 -0.9624 20 1 12.2156 1.8792 -1.4982 21 6 12.9625 0.1059 -0.5738 22 7 12.6579 -0.9949 0.0781 23 14 14.7463 0.4924 -0.9721 24 1 15.3420 1.2792 0.1377 25 1 15.5015 -0.7750 -1.1413 26 1 14.8134 1.2802 -2.2290 27 6 3.4311 1.2847 0.0001 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 0.2128 2.3204 -0.0014 32 1 1.3341 4.5114 -0.0011 33 1 3.7924 4.6379 0.0091 34 1 5.9720 1.7196 0.4971 35 1 5.8763 3.4967 0.5297 36 1 5.3995 4.7267 -1.3623 37 1 4.7350 3.7913 -2.7397 38 1 6.8338 3.8322 -3.9264 39 1 6.8635 5.4437 -3.1347 40 1 8.8984 3.7192 -2.6859 41 1 8.2228 4.6524 -1.3167 42 1 10.0608 2.4874 -1.6234 43 1 10.4041 0.5893 0.4398 44 1 10.2468 -0.2822 -1.1042 45 1 13.3595 -1.6063 0.3518 46 1 4.0206 0.3798 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787363818.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:21 Heat of formation + Delta-G solvation = -46.156794 kcal Electronic energy + Delta-G solvation = -26303.683550 eV Core-core repulsion = 22579.336410 eV Total energy + Delta-G solvation = -3724.347140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42744 -39.74818 -37.93706 -36.98626 -34.16897 -33.12593 -32.21867 -31.11604 -30.68549 -29.09477 -27.52063 -26.97486 -25.63944 -23.33064 -22.70603 -21.99948 -21.32520 -20.52504 -19.07834 -17.92552 -17.85582 -16.39409 -16.26881 -16.00030 -15.95538 -15.91005 -15.02151 -14.61831 -14.42804 -14.23748 -14.01088 -13.59132 -13.48239 -13.39415 -12.90646 -12.77818 -12.71582 -12.46365 -12.05408 -12.02694 -11.90922 -11.61392 -11.54272 -11.26879 -11.14765 -10.92357 -10.89699 -10.85773 -10.76933 -10.64100 -10.25981 -9.33576 -9.27606 -8.94589 -8.69231 -8.38005 -8.23747 -7.66958 -6.12228 -4.18608 1.20882 1.34759 3.08335 3.20273 3.26723 3.33052 3.35863 3.65459 3.96437 4.33936 4.53278 4.57001 4.62799 4.71254 4.83949 4.87873 4.88478 4.95175 5.06709 5.20120 5.20684 5.23767 5.27600 5.30178 5.37973 5.42495 5.56491 5.65729 5.70420 5.81281 5.83132 5.94366 6.06423 6.14310 6.18577 6.30481 6.34218 6.55084 6.65673 6.74668 7.24884 7.26861 7.56124 7.61523 7.63173 7.93709 8.07342 8.80223 8.95954 9.37665 9.52504 10.98041 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.002595 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.222757 B =10787.366961 C =11898.374082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.127 3.873 4 C -0.217 4.217 5 C -0.082 4.082 6 C -0.154 4.154 7 C -0.030 4.030 8 C -0.097 4.097 9 C 0.168 3.832 10 H 0.072 0.928 11 C -0.127 4.127 12 C -0.132 4.132 13 C 0.102 3.898 14 N -0.643 5.643 15 C 0.711 3.289 16 O -0.594 6.594 17 N -0.728 5.728 18 C 0.267 3.733 19 C -0.541 4.541 20 H 0.062 0.938 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.144 4.144 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.385 0.615 43 H 0.025 0.975 44 H 0.024 0.976 45 H 0.265 0.735 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.235 12.526 -3.774 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.236 4.236 5 C -0.100 4.100 6 C -0.172 4.172 7 C -0.030 4.030 8 C -0.135 4.135 9 C 0.064 3.936 10 H 0.090 0.910 11 C -0.165 4.165 12 C -0.170 4.170 13 C -0.022 4.022 14 N -0.383 5.383 15 C 0.413 3.587 16 O -0.473 6.473 17 N -0.380 5.380 18 C 0.146 3.854 19 C -0.579 4.579 20 H 0.080 0.920 21 C -0.140 4.140 22 N -0.523 5.523 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.163 4.163 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.218 0.782 43 H 0.043 0.957 44 H 0.042 0.958 45 H 0.075 0.925 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.310 11.333 -3.208 26.117 hybrid contribution 0.891 0.640 -0.361 1.155 sum -22.419 11.973 -3.569 25.665 Atomic orbital electron populations 1.23029 0.78646 1.03841 1.01146 1.86105 1.21158 1.27082 1.88727 1.19029 0.92293 0.84070 0.96421 1.21165 0.99724 0.92501 1.10195 1.20870 0.94566 0.96764 0.97806 1.20991 0.93557 0.97987 1.04661 1.19662 0.95597 0.92022 0.95758 1.21088 0.89857 1.04806 0.97782 1.21266 0.79570 0.97945 0.94851 0.91001 1.22752 0.98006 0.96594 0.99115 1.22760 0.94418 1.01353 0.98470 1.22182 0.97565 0.86689 0.95774 1.47835 1.05619 1.19294 1.65587 1.15695 0.81824 0.81514 0.79660 1.90854 1.74168 1.34318 1.47972 1.45761 1.03950 1.27585 1.60707 1.18977 0.87053 0.84683 0.94671 1.21219 0.90871 1.07567 1.38263 0.92033 1.24945 0.99506 0.94751 0.94828 1.69982 1.33442 1.11045 1.37804 0.86422 0.83977 0.77805 0.78719 1.20489 1.21021 1.19796 1.20461 0.91216 0.98830 1.05751 0.92786 0.92786 0.88328 0.85859 0.86029 0.85938 0.88413 0.90771 0.90499 0.90311 0.90674 0.90127 0.90928 0.91870 0.78185 0.95749 0.95752 0.92482 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.77 10.50 -19.41 -0.20 -3.97 16 3 C 0.13 1.55 6.69 -39.22 -0.26 1.29 16 4 C -0.22 -2.16 9.04 -39.43 -0.36 -2.51 16 5 C -0.08 -0.76 10.04 -39.60 -0.40 -1.15 16 6 C -0.15 -1.56 8.78 -39.56 -0.35 -1.90 16 7 C -0.03 -0.37 4.88 -104.64 -0.51 -0.88 16 8 C -0.10 -1.35 4.83 -27.88 -0.13 -1.48 16 9 C 0.17 2.31 2.96 -66.70 -0.20 2.11 16 10 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 11 C -0.13 -1.22 5.46 -24.89 -0.14 -1.36 16 12 C -0.13 -1.20 7.09 -24.58 -0.17 -1.38 16 13 C 0.10 1.22 6.69 -2.52 -0.02 1.20 16 14 N -0.64 -10.38 3.08 -168.34 -0.52 -10.90 16 15 C 0.71 15.31 8.32 -86.92 -0.72 14.59 16 16 O -0.59 -15.06 15.15 5.29 0.08 -14.98 16 17 N -0.73 -16.23 5.51 -66.42 -0.37 -16.59 16 18 C 0.27 7.31 5.43 -5.20 -0.03 7.28 16 19 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 20 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 23 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C -0.14 -1.94 9.64 -39.43 -0.38 -2.32 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.12 0.93 6.30 -52.49 -0.33 0.60 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.12 1.01 7.16 -52.49 -0.38 0.64 16 34 H 0.10 1.71 6.53 -51.93 -0.34 1.37 16 35 H 0.07 0.96 8.01 -51.93 -0.42 0.54 16 36 H 0.08 0.65 6.63 -51.93 -0.34 0.31 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.86 7.10 -51.93 -0.37 0.49 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.39 7.49 6.71 -40.82 -0.27 7.21 16 43 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.13 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -34.03 373.69 -9.76 -43.79 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.01 Total: 5.59 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -3.09 Total: 1.09 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.15 Total: -53.23 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.12 Total: -18.95 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.03 -9.76 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787363818.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.366 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds