Wall clock time and date at job start Tue Mar 31 2020 12:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 116.99992 * 2 1 4 4 C 1.38751 * 120.05755 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94418 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05656 * 359.72316 * 5 4 3 7 7 C 1.38251 * 120.10575 * 0.54799 * 6 5 4 8 8 C 1.50705 * 119.96863 * 179.72738 * 7 6 5 9 9 C 1.53001 * 109.46958 * 270.80372 * 8 7 6 10 10 H 1.09004 * 109.99447 * 304.59647 * 9 8 7 11 11 C 1.54321 * 109.88449 * 65.68895 * 9 8 7 12 12 C 1.55164 * 103.10079 * 141.70081 * 11 9 8 13 13 C 1.54914 * 101.58079 * 324.40969 * 12 11 9 14 14 N 1.47431 * 104.82870 * 37.01102 * 13 12 11 15 15 C 1.34776 * 125.64688 * 155.91395 * 14 13 12 16 16 O 1.21580 * 120.00288 * 174.43455 * 15 14 13 17 17 N 1.34776 * 119.99959 * 354.43075 * 15 14 13 18 18 C 1.46498 * 120.00189 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47316 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00052 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99928 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00179 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99941 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47082 * 89.99613 * 23 21 19 25 25 H 1.48503 * 109.47051 * 209.99651 * 23 21 19 26 26 H 1.48498 * 109.47037 * 329.99767 * 23 21 19 27 27 C 1.38164 * 120.05875 * 359.45190 * 7 6 5 28 28 H 1.09003 * 109.47186 * 300.00455 * 1 2 3 29 29 H 1.09006 * 109.46625 * 59.99789 * 1 2 3 30 30 H 1.08992 * 109.47873 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.03106 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.97536 * 180.02562 * 5 4 3 33 33 H 1.07997 * 119.94964 * 180.29533 * 6 5 4 34 34 H 1.08997 * 109.47304 * 150.80654 * 8 7 6 35 35 H 1.09000 * 109.47015 * 30.79863 * 8 7 6 36 36 H 1.09000 * 110.71834 * 23.25494 * 11 9 8 37 37 H 1.09000 * 110.72691 * 260.14946 * 11 9 8 38 38 H 1.08998 * 111.00587 * 82.48464 * 12 11 9 39 39 H 1.09002 * 111.00234 * 206.33957 * 12 11 9 40 40 H 1.09001 * 110.36457 * 155.84724 * 13 12 11 41 41 H 1.08999 * 110.37072 * 278.06206 * 13 12 11 42 42 H 0.97002 * 120.00208 * 359.97438 * 17 15 14 43 43 H 1.08999 * 109.47021 * 300.00263 * 18 17 15 44 44 H 1.09002 * 109.47141 * 60.00374 * 18 17 15 45 45 H 0.96999 * 119.99658 * 180.02562 * 22 21 19 46 46 H 1.07996 * 120.02826 * 180.24925 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 0.0047 7 6 4.0560 2.5169 -0.0004 8 6 5.5609 2.5980 -0.0003 9 6 6.0688 2.6518 -1.4425 10 1 5.6901 1.7971 -2.0032 11 6 5.6093 3.9640 -2.1122 12 6 6.8341 4.3657 -2.9759 13 6 8.0110 3.9041 -2.0805 14 7 7.5435 2.6515 -1.4592 15 6 8.3332 1.6681 -0.9840 16 8 7.8412 0.7223 -0.3995 17 7 9.6682 1.7331 -1.1567 18 6 10.5265 0.6639 -0.6407 19 6 11.9654 0.9753 -0.9624 20 1 12.2156 1.8792 -1.4982 21 6 12.9625 0.1059 -0.5738 22 7 12.6579 -0.9949 0.0781 23 14 14.7463 0.4924 -0.9721 24 1 15.3420 1.2792 0.1377 25 1 15.5015 -0.7750 -1.1413 26 1 14.8134 1.2802 -2.2290 27 6 3.4311 1.2847 0.0001 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 0.2128 2.3204 -0.0014 32 1 1.3341 4.5114 -0.0011 33 1 3.7924 4.6379 0.0091 34 1 5.9720 1.7196 0.4971 35 1 5.8763 3.4967 0.5297 36 1 5.3995 4.7267 -1.3623 37 1 4.7350 3.7913 -2.7397 38 1 6.8338 3.8322 -3.9264 39 1 6.8635 5.4437 -3.1347 40 1 8.8984 3.7192 -2.6859 41 1 8.2228 4.6524 -1.3167 42 1 10.0608 2.4874 -1.6234 43 1 10.4041 0.5893 0.4398 44 1 10.2468 -0.2822 -1.1042 45 1 13.3595 -1.6063 0.3518 46 1 4.0206 0.3798 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787363818.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:21 Heat of formation + Delta-G solvation = -68.702018 kcal Electronic energy + Delta-G solvation = -26304.661184 eV Core-core repulsion = 22579.336410 eV Total energy + Delta-G solvation = -3725.324774 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.50618 -40.93577 -39.10825 -38.12609 -36.16443 -34.59306 -33.80645 -32.38806 -31.52865 -30.09081 -28.97763 -28.17527 -26.63025 -25.09205 -23.61857 -23.47764 -22.18468 -21.60463 -20.75967 -19.36083 -18.77689 -18.02992 -17.46064 -17.19813 -16.88062 -16.77289 -16.65687 -16.36110 -15.79484 -15.33170 -15.13102 -14.77532 -14.59618 -14.31638 -14.27324 -14.12480 -13.99089 -13.69120 -13.54683 -13.34210 -12.93492 -12.81109 -12.73857 -12.70062 -12.41715 -12.24521 -12.08087 -11.93656 -11.73876 -11.68768 -11.53953 -11.48421 -11.08625 -10.81093 -10.08855 -9.79927 -9.38050 -9.11746 -8.29210 -6.46347 0.34330 0.50423 1.42197 1.45888 1.56694 1.74401 2.21359 2.37339 2.38926 2.79890 3.05445 3.26292 3.66180 3.71084 3.84921 3.89804 4.01820 4.19294 4.24816 4.27865 4.32292 4.38322 4.40362 4.46910 4.55787 4.64837 4.70767 4.78040 4.86077 4.93527 5.00359 5.05269 5.08780 5.14446 5.18370 5.24800 5.35331 5.38897 5.44241 5.50928 5.53324 5.70050 5.72604 5.84029 5.88384 6.24049 6.48137 6.65380 7.19592 7.24108 7.71347 8.83394 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.002595 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.222757 B =10787.366961 C =11898.374082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.348 6.348 3 C 0.114 3.886 4 C -0.212 4.212 5 C -0.072 4.072 6 C -0.148 4.148 7 C -0.039 4.039 8 C -0.088 4.088 9 C 0.160 3.840 10 H 0.044 0.956 11 C -0.113 4.113 12 C -0.118 4.118 13 C 0.088 3.912 14 N -0.637 5.637 15 C 0.704 3.296 16 O -0.645 6.645 17 N -0.722 5.722 18 C 0.287 3.713 19 C -0.554 4.554 20 H 0.083 0.917 21 C 0.002 3.998 22 N -0.932 5.932 23 Si 0.989 3.011 24 H -0.269 1.269 25 H -0.283 1.283 26 H -0.254 1.254 27 C -0.179 4.179 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.152 0.848 32 H 0.162 0.838 33 H 0.151 0.849 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.402 0.598 43 H -0.017 1.017 44 H -0.018 1.018 45 H 0.269 0.731 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.386 17.117 -5.357 30.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.262 6.262 3 C 0.069 3.931 4 C -0.230 4.230 5 C -0.090 4.090 6 C -0.166 4.166 7 C -0.039 4.039 8 C -0.126 4.126 9 C 0.056 3.944 10 H 0.063 0.937 11 C -0.150 4.150 12 C -0.156 4.156 13 C -0.033 4.033 14 N -0.375 5.375 15 C 0.406 3.594 16 O -0.527 6.527 17 N -0.376 5.376 18 C 0.164 3.836 19 C -0.592 4.592 20 H 0.101 0.899 21 C -0.197 4.197 22 N -0.570 5.570 23 Si 0.811 3.189 24 H -0.194 1.194 25 H -0.209 1.209 26 H -0.178 1.178 27 C -0.198 4.198 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.170 0.830 32 H 0.179 0.821 33 H 0.169 0.831 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.137 0.863 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.238 0.762 43 H 0.001 0.999 44 H 0.000 1.000 45 H 0.078 0.922 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -24.509 16.005 -4.835 29.668 hybrid contribution 1.087 -0.832 0.158 1.378 sum -23.422 15.172 -4.677 28.296 Atomic orbital electron populations 1.23340 0.76246 1.05397 1.02499 1.86065 1.23780 1.27556 1.88835 1.19148 0.91843 0.85243 0.96899 1.21520 1.01067 0.91772 1.08686 1.21338 0.94339 0.97806 0.95476 1.21244 0.94114 0.97765 1.03437 1.19526 0.94505 0.92693 0.97213 1.20898 0.91339 1.02819 0.97553 1.21525 0.77908 0.99933 0.94997 0.93729 1.22746 0.98672 0.94038 0.99572 1.22776 0.91986 1.03544 0.97312 1.22604 0.99172 0.84792 0.96779 1.47842 1.06452 1.19242 1.63998 1.15900 0.81790 0.82146 0.79551 1.90822 1.74982 1.36860 1.50057 1.45345 1.04103 1.27075 1.61124 1.18389 0.88624 0.84653 0.91912 1.21573 0.90612 1.08481 1.38534 0.89857 1.26115 1.05217 0.94205 0.94165 1.70158 1.35431 1.12447 1.38995 0.85107 0.76706 0.77771 0.79303 1.19444 1.20897 1.17804 1.20389 0.92357 0.98303 1.08774 0.91402 0.91247 0.86920 0.83020 0.82079 0.83116 0.93651 0.89455 0.88122 0.88705 0.90787 0.86275 0.90766 0.90054 0.76231 0.99860 1.00002 0.92211 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.35 -8.63 10.50 -92.38 -0.97 -9.60 16 3 C 0.11 2.84 6.69 22.51 0.15 2.99 16 4 C -0.21 -3.69 9.04 22.37 0.20 -3.49 16 5 C -0.07 -1.04 10.04 22.26 0.22 -0.82 16 6 C -0.15 -2.57 8.78 22.29 0.20 -2.38 16 7 C -0.04 -0.98 4.88 -19.88 -0.10 -1.08 16 8 C -0.09 -2.59 4.83 29.85 0.14 -2.44 16 9 C 0.16 4.51 2.96 45.25 0.13 4.64 16 10 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 11 C -0.11 -1.82 5.46 31.78 0.17 -1.65 16 12 C -0.12 -1.71 7.09 31.99 0.23 -1.48 16 13 C 0.09 1.94 6.69 86.86 0.58 2.52 16 14 N -0.64 -21.11 3.08 -804.77 -2.48 -23.59 16 15 C 0.70 32.47 8.32 179.05 1.49 33.96 16 16 O -0.64 -36.11 15.15 -3.97 -0.06 -36.17 16 17 N -0.72 -33.86 5.51 -482.31 -2.66 -36.52 16 18 C 0.29 16.82 5.43 85.63 0.46 17.28 16 19 C -0.55 -31.31 9.28 25.60 0.24 -31.07 16 20 H 0.08 4.24 7.60 -2.91 -0.02 4.22 16 21 C 0.00 0.14 5.46 84.65 0.46 0.60 16 22 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 23 Si 0.99 43.21 29.54 68.60 2.03 45.23 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 26 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 27 C -0.18 -5.34 9.64 22.37 0.22 -5.13 16 28 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 29 H 0.07 0.69 7.66 -2.38 -0.02 0.68 16 30 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.15 1.72 6.30 -2.91 -0.02 1.70 16 32 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 33 H 0.15 1.76 7.16 -2.91 -0.02 1.74 16 34 H 0.04 1.81 6.53 -2.39 -0.02 1.79 16 35 H 0.09 2.25 8.01 -2.39 -0.02 2.24 16 36 H 0.10 1.21 6.63 -2.39 -0.02 1.19 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 1.62 7.10 -2.39 -0.02 1.60 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.40 15.80 6.71 -92.71 -0.62 15.18 16 43 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 44 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 45 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.10 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -83.17 373.69 2.42 -80.75 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.36 Total: 23.69 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 5.92 Total: 13.83 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -4.85 Total: -117.74 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -1.03 Total: -45.77 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -83.17 2.42 -80.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787363818.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.052 kcal (2) G-P(sol) polarization free energy of solvation -83.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds