Wall clock time and date at job start Tue Mar 31 2020 12:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34778 * 119.99988 * 2 1 4 4 O 1.21276 * 119.99895 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99738 * 179.97438 * 3 2 1 6 6 H 1.08996 * 110.05853 * 301.41638 * 5 3 2 7 7 C 1.54265 * 110.03121 * 62.83444 * 5 3 2 8 8 C 1.55240 * 104.22988 * 142.89590 * 7 5 3 9 9 C 1.54889 * 102.58767 * 322.08180 * 8 7 5 10 10 C 1.53873 * 110.03034 * 180.02562 * 5 3 2 11 11 H 1.08995 * 110.03227 * 359.97438 * 10 5 3 12 12 N 1.46896 * 110.07463 * 121.41149 * 10 5 3 13 13 C 1.46903 * 111.00016 * 203.64351 * 12 10 5 14 14 C 1.50696 * 109.47138 * 179.97438 * 13 12 10 15 15 C 1.38306 * 119.93381 * 269.72694 * 14 13 12 16 16 C 1.38101 * 120.06744 * 179.72481 * 15 14 13 17 17 C 1.38875 * 119.93366 * 0.54875 * 16 15 14 18 18 O 1.35749 * 120.07157 * 179.74811 * 17 16 15 19 19 C 1.34829 * 117.00031 * 174.44295 * 18 17 16 20 20 H 1.07998 * 119.99874 * 5.05332 * 19 18 17 21 21 C 1.38657 * 119.99950 * 185.05672 * 19 18 17 22 22 N 1.31555 * 119.99938 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99768 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.47417 * 90.00119 * 23 21 19 25 25 H 1.48499 * 109.47071 * 209.99995 * 23 21 19 26 26 H 1.48505 * 109.47380 * 329.99986 * 23 21 19 27 27 C 1.38878 * 119.86042 * 359.72420 * 17 16 15 28 28 C 1.38105 * 119.93458 * 0.02562 * 27 17 16 29 29 H 1.09006 * 109.47503 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47321 * 300.00327 * 1 2 3 31 31 H 1.08999 * 109.47051 * 60.00234 * 1 2 3 32 32 H 0.96998 * 119.99455 * 179.97438 * 2 1 3 33 33 H 1.08999 * 110.48466 * 261.57203 * 7 5 3 34 34 H 1.08990 * 110.48791 * 24.08311 * 7 5 3 35 35 H 1.09007 * 110.89542 * 203.79181 * 8 7 5 36 36 H 1.08994 * 110.76691 * 80.31641 * 8 7 5 37 37 H 1.08999 * 110.48639 * 279.19241 * 9 8 7 38 38 H 1.09000 * 110.48476 * 156.68191 * 9 8 7 39 39 H 1.00899 * 111.00057 * 327.59666 * 12 10 5 40 40 H 1.08993 * 109.46870 * 299.99657 * 13 12 10 41 41 H 1.09001 * 109.47174 * 59.99893 * 13 12 10 42 42 H 1.07995 * 119.96005 * 0.02562 * 15 14 13 43 43 H 1.08007 * 120.03006 * 180.27506 * 16 15 14 44 44 H 0.96999 * 119.99649 * 180.02562 * 22 21 19 45 45 H 1.07997 * 120.03638 * 180.02562 * 27 17 16 46 46 H 1.07993 * 119.96898 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6458 1.1671 0.0006 6 1 4.0193 0.6336 0.8746 7 6 4.1747 0.5051 -1.2885 8 6 5.4331 1.3366 -1.6559 9 6 5.0038 2.7788 -1.2887 10 6 4.1729 2.6128 0.0011 11 1 3.3388 3.3143 0.0005 12 7 5.0208 2.8399 1.1790 13 6 5.0767 4.2677 1.5200 14 6 5.9530 4.4611 2.7307 15 6 5.3985 4.4226 3.9971 16 6 6.1998 4.5938 5.1088 17 6 7.5618 4.8161 4.9536 18 8 8.3513 4.9899 6.0442 19 6 9.6789 5.0862 5.8298 20 1 10.0628 5.1065 4.8205 21 6 10.5514 5.1590 6.9050 22 7 11.8467 5.2535 6.6957 23 14 9.8872 5.1245 8.6506 24 1 9.8138 3.7190 9.1246 25 1 10.7898 5.8999 9.5390 26 1 8.5301 5.7270 8.6760 27 6 8.1147 4.8599 3.6804 28 6 7.3090 4.6828 2.5728 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.9499 -0.8401 0.0004 33 1 4.4459 -0.5337 -1.1003 34 1 3.4300 0.5662 -2.0820 35 1 5.6536 1.2585 -2.7206 36 1 6.2901 1.0248 -1.0590 37 1 4.3938 3.2092 -2.0829 38 1 5.8788 3.4012 -1.1012 39 1 4.7023 2.2927 1.9647 40 1 5.4892 4.8260 0.6796 41 1 4.0717 4.6289 1.7379 42 1 4.3386 4.2536 4.1169 43 1 5.7669 4.5592 6.0977 44 1 12.4571 5.3041 7.4479 45 1 9.1736 5.0322 3.5564 46 1 7.7382 4.7171 1.5824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794575370.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:07 Heat of formation + Delta-G solvation = -45.670998 kcal Electronic energy + Delta-G solvation = -25900.610321 eV Core-core repulsion = 22176.284247 eV Total energy + Delta-G solvation = -3724.326074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.55730 -39.19024 -37.99926 -36.80475 -35.00920 -34.13748 -32.35384 -30.26347 -30.07521 -29.85804 -27.15659 -26.71952 -25.41068 -23.74827 -22.06292 -21.91522 -20.78952 -20.18515 -19.72417 -17.91470 -17.81452 -17.21948 -16.63538 -15.89965 -15.70102 -15.06557 -14.92433 -14.78968 -14.40973 -14.11847 -13.96493 -13.76005 -13.64787 -13.43096 -13.08396 -12.83447 -12.69994 -12.54319 -12.30910 -12.21720 -11.85835 -11.69202 -11.40784 -11.23470 -11.20492 -11.07270 -10.86295 -10.70943 -10.65182 -10.57695 -10.12612 -10.04649 -9.53181 -9.35880 -8.85220 -8.31124 -8.20765 -7.28987 -6.39961 -4.06359 2.16843 2.21918 2.31682 2.83679 3.22952 3.26518 3.41409 4.14254 4.17917 4.25023 4.33554 4.50237 4.70023 4.78081 4.88455 4.96176 5.09122 5.11964 5.12999 5.19825 5.31178 5.38782 5.40587 5.40959 5.45415 5.53871 5.68554 5.70794 5.77368 5.85796 5.90840 5.93086 6.03380 6.09502 6.16610 6.18660 6.38541 6.60830 6.83293 7.02782 7.06141 7.16231 7.27012 7.36975 7.48733 7.64671 7.82950 7.86902 8.06110 8.95478 9.58418 10.67754 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.002347 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.302788 B =11925.687719 C =12502.621867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.736 5.736 3 C 0.517 3.483 4 O -0.536 6.536 5 C -0.116 4.116 6 H 0.106 0.894 7 C -0.110 4.110 8 C -0.117 4.117 9 C -0.114 4.114 10 C 0.087 3.913 11 H 0.071 0.929 12 N -0.675 5.675 13 C 0.116 3.884 14 C -0.174 4.174 15 C -0.071 4.071 16 C -0.193 4.193 17 C 0.161 3.839 18 O -0.219 6.219 19 C -0.389 4.389 20 H 0.107 0.893 21 C 0.063 3.937 22 N -0.880 5.880 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.222 4.222 28 C -0.050 4.050 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.403 0.597 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.339 0.661 40 H 0.071 0.929 41 H 0.030 0.970 42 H 0.108 0.892 43 H 0.115 0.885 44 H 0.279 0.721 45 H 0.132 0.868 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.662 -11.986 -15.968 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.388 5.388 3 C 0.304 3.696 4 O -0.412 6.412 5 C -0.138 4.138 6 H 0.124 0.876 7 C -0.148 4.148 8 C -0.154 4.154 9 C -0.152 4.152 10 C -0.023 4.023 11 H 0.089 0.911 12 N -0.307 5.307 13 C -0.012 4.012 14 C -0.175 4.175 15 C -0.090 4.090 16 C -0.213 4.213 17 C 0.109 3.891 18 O -0.124 6.124 19 C -0.464 4.464 20 H 0.124 0.876 21 C -0.141 4.141 22 N -0.518 5.518 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.241 4.241 28 C -0.069 4.069 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.236 0.764 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.157 0.843 40 H 0.090 0.910 41 H 0.048 0.952 42 H 0.126 0.874 43 H 0.133 0.867 44 H 0.089 0.911 45 H 0.150 0.850 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.374 -11.152 -15.982 26.785 hybrid contribution -0.713 -0.400 1.165 1.423 sum -19.087 -11.552 -14.817 26.783 Atomic orbital electron populations 1.21542 0.79687 1.02193 1.02367 1.45805 1.07744 1.08814 1.76438 1.20721 0.90363 0.83481 0.75058 1.90693 1.70257 1.31280 1.48990 1.22155 0.90793 0.99350 1.01516 0.87580 1.22354 0.98128 0.99262 0.95077 1.22492 0.97218 0.94913 1.00801 1.22403 0.99971 0.97210 0.95628 1.22143 0.94367 0.93707 0.92077 0.91090 1.60739 1.54492 1.08318 1.07152 1.20677 0.96673 0.88256 0.95574 1.19204 0.94314 1.10681 0.93303 1.20494 0.98012 0.98839 0.91662 1.20158 0.91454 1.10937 0.98712 1.19132 0.90512 0.92646 0.86850 1.83569 1.19368 1.79687 1.29747 1.20774 0.77203 1.51680 0.96759 0.87602 1.24468 0.94229 0.95772 0.99582 1.69648 1.01308 1.47927 1.32925 0.86184 0.79624 0.78755 0.82336 1.19916 1.20811 1.18399 1.21286 1.01229 1.09683 0.91934 1.20627 0.92527 0.96225 0.97527 0.90659 0.92206 0.92276 0.76388 0.90905 0.91506 0.91642 0.90459 0.91947 0.90414 0.84271 0.91011 0.95183 0.87361 0.86696 0.91087 0.85011 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 10.70 59.85 0.64 1.15 16 2 N -0.74 -4.91 5.66 -67.08 -0.38 -5.29 16 3 C 0.52 5.15 6.99 -10.99 -0.08 5.08 16 4 O -0.54 -7.57 15.21 5.56 0.08 -7.49 16 5 C -0.12 -1.01 2.98 -90.66 -0.27 -1.28 16 6 H 0.11 0.84 7.49 -51.93 -0.39 0.45 16 7 C -0.11 -0.76 6.32 -24.88 -0.16 -0.91 16 8 C -0.12 -0.94 6.93 -24.55 -0.17 -1.11 16 9 C -0.11 -1.12 6.44 -25.04 -0.16 -1.29 16 10 C 0.09 0.95 2.84 -66.57 -0.19 0.76 16 11 H 0.07 0.94 6.08 -51.93 -0.32 0.62 16 12 N -0.68 -8.30 6.24 -106.79 -0.67 -8.97 16 13 C 0.12 1.60 5.60 -4.98 -0.03 1.57 16 14 C -0.17 -2.90 5.40 -104.57 -0.56 -3.46 16 15 C -0.07 -1.22 9.69 -39.61 -0.38 -1.61 16 16 C -0.19 -3.87 9.99 -39.40 -0.39 -4.26 16 17 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 18 O -0.22 -5.83 8.59 0.05 0.00 -5.83 16 19 C -0.39 -11.03 9.95 30.89 0.31 -10.72 16 20 H 0.11 3.07 5.44 -52.49 -0.29 2.78 16 21 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 22 N -0.88 -25.55 13.96 55.48 0.77 -24.78 16 23 Si 0.91 21.82 28.62 -169.99 -4.86 16.96 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.26 -6.30 7.11 56.52 0.40 -5.89 16 27 C -0.22 -4.84 9.17 -39.39 -0.36 -5.20 16 28 C -0.05 -0.92 9.69 -39.60 -0.38 -1.31 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.40 1.53 8.83 -40.82 -0.36 1.17 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.46 7.85 -51.93 -0.41 0.05 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.84 7.68 -51.93 -0.40 0.44 16 39 H 0.34 4.13 8.04 -39.29 -0.32 3.81 16 40 H 0.07 0.96 7.73 -51.93 -0.40 0.56 16 41 H 0.03 0.41 8.01 -51.93 -0.42 0.00 16 42 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 43 H 0.11 2.16 8.06 -52.48 -0.42 1.73 16 44 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.13 3.02 5.64 -52.49 -0.30 2.72 16 46 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -32.20 376.69 -8.87 -41.07 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.95 Total: 6.07 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -2.55 Total: -17.43 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.27 Total: -39.03 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.86 Total: 16.96 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.20 -8.87 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794575370.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.603 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds