Wall clock time and date at job start Tue Mar 31 2020 12:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34779 * 119.99891 * 2 1 4 4 O 1.21276 * 119.99746 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99707 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.81353 * 56.66710 * 5 3 2 7 7 C 1.54884 * 110.75628 * 293.32700 * 5 3 2 8 8 C 1.54270 * 104.19485 * 203.74709 * 7 5 3 9 9 C 1.53869 * 106.59891 * 23.61027 * 8 7 5 10 10 C 1.54266 * 106.59995 * 359.97438 * 9 8 7 11 11 H 1.09003 * 110.48591 * 95.19969 * 10 9 8 12 12 N 1.46901 * 110.49045 * 217.71136 * 10 9 8 13 13 C 1.46900 * 110.99944 * 273.55097 * 12 10 9 14 14 C 1.50702 * 109.47036 * 179.97438 * 13 12 10 15 15 C 1.38311 * 119.92915 * 89.99553 * 14 13 12 16 16 C 1.38096 * 120.06782 * 180.02562 * 15 14 13 17 17 C 1.38883 * 119.93001 * 359.97438 * 16 15 14 18 18 O 1.35752 * 120.06733 * 179.72546 * 17 16 15 19 19 C 1.34835 * 116.99867 * 174.45565 * 18 17 16 20 20 H 1.08001 * 119.99908 * 5.03572 * 19 18 17 21 21 C 1.38654 * 119.99862 * 185.04415 * 19 18 17 22 22 N 1.31554 * 119.99970 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99933 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47141 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46901 * 120.00333 * 23 21 19 26 26 H 1.48500 * 109.47422 * 239.99965 * 23 21 19 27 27 C 1.38878 * 119.86281 * 0.02562 * 17 16 15 28 28 C 1.38100 * 119.93217 * 359.97321 * 27 17 16 29 29 H 1.09004 * 109.46840 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47150 * 300.00439 * 1 2 3 31 31 H 1.09006 * 109.46739 * 60.00414 * 1 2 3 32 32 H 0.96994 * 119.99851 * 179.97438 * 2 1 3 33 33 H 1.08994 * 110.48859 * 85.07064 * 7 5 3 34 34 H 1.09001 * 110.60134 * 322.47523 * 7 5 3 35 35 H 1.09004 * 110.02655 * 264.32446 * 8 7 5 36 36 H 1.09000 * 110.07559 * 142.92157 * 8 7 5 37 37 H 1.09005 * 110.03180 * 240.71429 * 9 8 7 38 38 H 1.08996 * 110.03664 * 119.28802 * 9 8 7 39 39 H 1.00893 * 111.00058 * 149.58909 * 12 10 9 40 40 H 1.08992 * 109.47390 * 59.99790 * 13 12 10 41 41 H 1.08999 * 109.46842 * 299.99138 * 13 12 10 42 42 H 1.08001 * 119.96634 * 0.02562 * 15 14 13 43 43 H 1.07991 * 120.03444 * 180.02562 * 16 15 14 44 44 H 0.97002 * 120.00599 * 179.97438 * 22 21 19 45 45 H 1.08007 * 120.03391 * 179.97438 * 27 17 16 46 46 H 1.08001 * 119.96661 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0335 0.6071 -0.8504 7 6 4.1943 0.5940 1.3309 8 6 5.6084 1.1990 1.4491 9 6 5.6087 2.4844 0.6032 10 6 4.1950 2.6152 -0.0001 11 1 3.5735 3.2606 0.6208 12 7 4.2673 3.1377 -1.3711 13 6 4.2904 4.6065 -1.3743 14 6 4.3653 5.1047 -2.7946 15 6 3.2024 5.3514 -3.5016 16 6 3.2677 5.8075 -4.8034 17 6 4.5027 6.0188 -5.4025 18 8 4.5702 6.4618 -6.6839 19 6 5.7945 6.7557 -7.1664 20 1 6.6721 6.5583 -6.5686 21 6 5.9267 7.3114 -8.4297 22 7 4.8577 7.5515 -9.1579 23 14 7.6228 7.7192 -9.0978 24 1 8.6520 7.3552 -8.0912 25 1 7.8601 6.9525 -10.3473 26 1 7.7047 9.1736 -9.3865 27 6 5.6685 5.7702 -4.6899 28 6 5.5966 5.3142 -3.3883 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.9500 -0.8400 0.0004 33 1 4.2474 -0.4937 1.2845 34 1 3.5732 0.9093 2.1693 35 1 6.3481 0.4976 1.0629 36 1 5.8278 1.4369 2.4899 37 1 6.3486 2.4068 -0.1935 38 1 5.8273 3.3462 1.2336 39 1 3.5059 2.7867 -1.9324 40 1 5.1609 4.9574 -0.8202 41 1 3.3831 4.9851 -0.9035 42 1 2.2423 5.1872 -3.0350 43 1 2.3594 6.0003 -5.3548 44 1 4.9501 7.9407 -10.0416 45 1 6.6305 5.9332 -5.1532 46 1 6.5029 5.1211 -2.8336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794575372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:09 Heat of formation + Delta-G solvation = -50.280976 kcal Electronic energy + Delta-G solvation = -25960.646326 eV Core-core repulsion = 22236.120348 eV Total energy + Delta-G solvation = -3724.525978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.44036 -38.98978 -37.91837 -36.65608 -34.94373 -34.14834 -32.21955 -30.15016 -30.04191 -29.71043 -27.04716 -26.63088 -25.37853 -23.68303 -22.08354 -21.86408 -20.63205 -20.10877 -19.89500 -17.92363 -17.82668 -16.88736 -16.51794 -15.98834 -15.42238 -14.99672 -14.85575 -14.58957 -14.39539 -14.10995 -14.06137 -13.74003 -13.48711 -13.28886 -13.10794 -12.79897 -12.63445 -12.58310 -12.40129 -12.06607 -11.77660 -11.59521 -11.44082 -11.28897 -11.20205 -11.02392 -10.70251 -10.64197 -10.53689 -10.40160 -10.36708 -10.02271 -9.45919 -9.26179 -8.79159 -8.27486 -8.08194 -7.10702 -6.40548 -3.99083 2.30598 2.36629 2.38423 2.91021 3.15124 3.16685 3.22316 4.00632 4.12504 4.20637 4.31044 4.57189 4.75544 4.82244 4.98738 5.11003 5.15258 5.16846 5.19980 5.21885 5.34280 5.35855 5.43177 5.47472 5.50517 5.55348 5.67251 5.76268 5.84632 5.87618 5.98677 6.00369 6.03309 6.06180 6.21206 6.29846 6.51730 6.78930 6.99465 7.10721 7.13055 7.23025 7.30839 7.47913 7.50624 7.58260 7.91278 7.93994 8.05195 9.05463 9.76882 10.77837 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.002417 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.230256 B =11583.375256 C =12420.591083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.736 5.736 3 C 0.517 3.483 4 O -0.534 6.534 5 C -0.120 4.120 6 H 0.112 0.888 7 C -0.109 4.109 8 C -0.121 4.121 9 C -0.118 4.118 10 C 0.101 3.899 11 H 0.060 0.940 12 N -0.674 5.674 13 C 0.119 3.881 14 C -0.182 4.182 15 C -0.068 4.068 16 C -0.194 4.194 17 C 0.156 3.844 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.236 4.236 28 C -0.050 4.050 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.401 0.599 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.341 0.659 40 H 0.068 0.932 41 H 0.031 0.969 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.269 0.731 45 H 0.126 0.874 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.052 -16.734 21.333 27.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.388 5.388 3 C 0.304 3.696 4 O -0.410 6.410 5 C -0.141 4.141 6 H 0.130 0.870 7 C -0.147 4.147 8 C -0.159 4.159 9 C -0.156 4.156 10 C -0.010 4.010 11 H 0.078 0.922 12 N -0.305 5.305 13 C -0.009 4.009 14 C -0.183 4.183 15 C -0.087 4.087 16 C -0.213 4.213 17 C 0.102 3.898 18 O -0.084 6.084 19 C -0.466 4.466 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.255 4.255 28 C -0.068 4.068 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.235 0.765 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.160 0.840 40 H 0.087 0.913 41 H 0.049 0.951 42 H 0.125 0.875 43 H 0.133 0.867 44 H 0.079 0.921 45 H 0.143 0.857 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.056 -15.873 20.888 26.315 hybrid contribution 0.069 -0.090 -0.201 0.231 sum -1.986 -15.963 20.687 26.205 Atomic orbital electron populations 1.21542 0.79685 1.02139 1.02435 1.45823 1.07750 1.08794 1.76463 1.20691 0.90104 0.83560 0.75292 1.90733 1.70361 1.31261 1.48643 1.22508 0.90768 0.99907 1.00936 0.86998 1.22253 0.97019 1.00090 0.95365 1.22086 0.96143 0.97362 1.00269 1.22211 0.97298 0.96998 0.99108 1.22191 0.95376 0.92313 0.91117 0.92200 1.60773 1.51058 1.08701 1.09952 1.20628 0.99839 0.86484 0.93960 1.19146 0.93311 1.09818 0.96023 1.20522 0.96900 0.97798 0.93432 1.20168 0.95725 1.09806 0.95610 1.19395 0.93310 0.91833 0.85277 1.83979 1.32142 1.71653 1.20588 1.21378 0.82496 1.42087 1.00656 0.89034 1.25285 0.99467 0.96367 0.95489 1.70050 1.28503 1.40608 1.10801 0.85650 0.80308 0.78428 0.79055 1.19103 1.20193 1.20186 1.21161 0.98673 1.09763 0.95909 1.20563 0.96214 0.96086 0.93976 0.90726 0.92327 0.92082 0.76513 0.90954 0.91288 0.91361 0.91665 0.90073 0.91946 0.84032 0.91316 0.95129 0.87450 0.86699 0.92142 0.85654 0.87530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.70 59.85 0.64 1.21 16 2 N -0.74 -5.30 5.71 -67.07 -0.38 -5.68 16 3 C 0.52 5.41 7.09 -10.98 -0.08 5.33 16 4 O -0.53 -7.90 15.73 5.56 0.09 -7.81 16 5 C -0.12 -1.05 2.70 -89.79 -0.24 -1.29 16 6 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 7 C -0.11 -0.71 6.26 -25.07 -0.16 -0.87 16 8 C -0.12 -0.84 6.80 -25.61 -0.17 -1.01 16 9 C -0.12 -1.11 6.46 -25.62 -0.17 -1.27 16 10 C 0.10 1.12 2.24 -66.07 -0.15 0.97 16 11 H 0.06 0.78 7.17 -51.93 -0.37 0.41 16 12 N -0.67 -9.10 6.28 -106.25 -0.67 -9.77 16 13 C 0.12 1.78 5.65 -4.97 -0.03 1.75 16 14 C -0.18 -3.28 5.40 -104.57 -0.56 -3.85 16 15 C -0.07 -1.29 9.69 -39.61 -0.38 -1.68 16 16 C -0.19 -4.30 9.99 -39.39 -0.39 -4.69 16 17 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 18 O -0.18 -5.28 9.76 0.03 0.00 -5.28 16 19 C -0.39 -11.13 9.49 30.89 0.29 -10.84 16 20 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -25.81 13.67 55.48 0.76 -25.06 16 23 Si 0.94 20.89 29.55 -169.99 -5.02 15.87 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 C -0.24 -5.31 9.17 -39.39 -0.36 -5.67 16 28 C -0.05 -0.95 9.69 -39.61 -0.38 -1.34 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.40 1.67 8.83 -40.82 -0.36 1.31 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.34 4.95 8.42 -39.30 -0.33 4.62 16 40 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 41 H 0.03 0.47 8.02 -51.93 -0.42 0.05 16 42 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 43 H 0.11 2.48 8.06 -52.49 -0.42 2.05 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.13 2.82 5.64 -52.48 -0.30 2.53 16 46 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -33.64 380.55 -9.08 -42.72 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.09 Total: 7.92 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -2.50 Total: -18.65 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: -0.29 Total: -40.51 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.64 -9.08 -42.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794575372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.558 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds