Wall clock time and date at job start Tue Mar 31 2020 12:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34779 * 119.99891 * 2 1 4 4 O 1.21276 * 119.99746 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99707 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.81353 * 56.66710 * 5 3 2 7 7 C 1.54884 * 110.75628 * 293.32700 * 5 3 2 8 8 C 1.54270 * 104.19485 * 203.74709 * 7 5 3 9 9 C 1.53869 * 106.59891 * 23.61027 * 8 7 5 10 10 C 1.54266 * 106.59995 * 359.97438 * 9 8 7 11 11 H 1.09003 * 110.48591 * 95.19969 * 10 9 8 12 12 N 1.46901 * 110.49045 * 217.71136 * 10 9 8 13 13 C 1.46900 * 110.99944 * 273.55097 * 12 10 9 14 14 C 1.50702 * 109.47036 * 179.97438 * 13 12 10 15 15 C 1.38311 * 119.92915 * 89.99553 * 14 13 12 16 16 C 1.38096 * 120.06782 * 180.02562 * 15 14 13 17 17 C 1.38883 * 119.93001 * 359.97438 * 16 15 14 18 18 O 1.35752 * 120.06733 * 179.72546 * 17 16 15 19 19 C 1.34835 * 116.99867 * 174.45565 * 18 17 16 20 20 H 1.08001 * 119.99908 * 5.03572 * 19 18 17 21 21 C 1.38654 * 119.99862 * 185.04415 * 19 18 17 22 22 N 1.31554 * 119.99970 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99933 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47141 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46901 * 120.00333 * 23 21 19 26 26 H 1.48500 * 109.47422 * 239.99965 * 23 21 19 27 27 C 1.38878 * 119.86281 * 0.02562 * 17 16 15 28 28 C 1.38100 * 119.93217 * 359.97321 * 27 17 16 29 29 H 1.09004 * 109.46840 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47150 * 300.00439 * 1 2 3 31 31 H 1.09006 * 109.46739 * 60.00414 * 1 2 3 32 32 H 0.96994 * 119.99851 * 179.97438 * 2 1 3 33 33 H 1.08994 * 110.48859 * 85.07064 * 7 5 3 34 34 H 1.09001 * 110.60134 * 322.47523 * 7 5 3 35 35 H 1.09004 * 110.02655 * 264.32446 * 8 7 5 36 36 H 1.09000 * 110.07559 * 142.92157 * 8 7 5 37 37 H 1.09005 * 110.03180 * 240.71429 * 9 8 7 38 38 H 1.08996 * 110.03664 * 119.28802 * 9 8 7 39 39 H 1.00893 * 111.00058 * 149.58909 * 12 10 9 40 40 H 1.08992 * 109.47390 * 59.99790 * 13 12 10 41 41 H 1.08999 * 109.46842 * 299.99138 * 13 12 10 42 42 H 1.08001 * 119.96634 * 0.02562 * 15 14 13 43 43 H 1.07991 * 120.03444 * 180.02562 * 16 15 14 44 44 H 0.97002 * 120.00599 * 179.97438 * 22 21 19 45 45 H 1.08007 * 120.03391 * 179.97438 * 27 17 16 46 46 H 1.08001 * 119.96661 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0335 0.6071 -0.8504 7 6 4.1943 0.5940 1.3309 8 6 5.6084 1.1990 1.4491 9 6 5.6087 2.4844 0.6032 10 6 4.1950 2.6152 -0.0001 11 1 3.5735 3.2606 0.6208 12 7 4.2673 3.1377 -1.3711 13 6 4.2904 4.6065 -1.3743 14 6 4.3653 5.1047 -2.7946 15 6 3.2024 5.3514 -3.5016 16 6 3.2677 5.8075 -4.8034 17 6 4.5027 6.0188 -5.4025 18 8 4.5702 6.4618 -6.6839 19 6 5.7945 6.7557 -7.1664 20 1 6.6721 6.5583 -6.5686 21 6 5.9267 7.3114 -8.4297 22 7 4.8577 7.5515 -9.1579 23 14 7.6228 7.7192 -9.0978 24 1 8.6520 7.3552 -8.0912 25 1 7.8601 6.9525 -10.3473 26 1 7.7047 9.1736 -9.3865 27 6 5.6685 5.7702 -4.6899 28 6 5.5966 5.3142 -3.3883 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.9500 -0.8400 0.0004 33 1 4.2474 -0.4937 1.2845 34 1 3.5732 0.9093 2.1693 35 1 6.3481 0.4976 1.0629 36 1 5.8278 1.4369 2.4899 37 1 6.3486 2.4068 -0.1935 38 1 5.8273 3.3462 1.2336 39 1 3.5059 2.7867 -1.9324 40 1 5.1609 4.9574 -0.8202 41 1 3.3831 4.9851 -0.9035 42 1 2.2423 5.1872 -3.0350 43 1 2.3594 6.0003 -5.3548 44 1 4.9501 7.9407 -10.0416 45 1 6.6305 5.9332 -5.1532 46 1 6.5029 5.1211 -2.8336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794575372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:09 Heat of formation + Delta-G solvation = -74.282640 kcal Electronic energy + Delta-G solvation = -25961.687116 eV Core-core repulsion = 22236.120348 eV Total energy + Delta-G solvation = -3725.566768 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.24725 -40.76651 -38.94528 -38.20466 -35.74511 -35.27674 -34.22291 -31.81473 -31.22012 -30.69450 -28.11608 -27.44213 -27.13821 -25.03271 -23.62046 -22.77147 -22.06394 -21.01836 -20.67698 -19.83948 -18.85053 -18.52808 -17.43915 -16.78770 -16.45547 -16.42223 -16.10485 -15.96541 -15.70323 -15.45155 -15.39619 -14.99420 -14.79036 -14.48413 -14.40764 -14.21083 -13.85605 -13.58608 -13.26552 -13.16465 -13.08618 -12.95779 -12.85294 -12.43004 -12.33424 -12.10643 -12.07769 -12.00734 -11.85686 -11.63480 -11.26950 -11.16936 -10.84512 -10.79837 -10.14808 -9.78833 -9.38553 -8.91266 -8.46968 -6.15209 0.59040 0.66991 1.35464 1.43914 1.54289 1.59596 2.18232 2.27860 2.78184 3.10747 3.38695 3.45741 3.51790 3.67820 3.93582 4.05129 4.06656 4.19796 4.26661 4.45399 4.46252 4.49184 4.50986 4.56698 4.59789 4.60692 4.71040 4.72148 4.77952 4.85027 4.93241 5.06767 5.08612 5.13684 5.17181 5.25925 5.29759 5.37471 5.43547 5.48440 5.56505 5.70962 5.81887 6.03157 6.12562 6.23375 6.39914 6.53780 6.97743 7.24799 7.78623 8.76738 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.002417 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.230256 B =11583.375256 C =12420.591083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.721 5.721 3 C 0.512 3.488 4 O -0.586 6.586 5 C -0.113 4.113 6 H 0.123 0.877 7 C -0.101 4.101 8 C -0.116 4.116 9 C -0.116 4.116 10 C 0.097 3.903 11 H 0.039 0.961 12 N -0.673 5.673 13 C 0.125 3.875 14 C -0.157 4.157 15 C -0.063 4.063 16 C -0.204 4.204 17 C 0.116 3.884 18 O -0.233 6.233 19 C -0.413 4.413 20 H 0.103 0.897 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.250 1.250 25 H -0.268 1.268 26 H -0.269 1.269 27 C -0.241 4.241 28 C -0.045 4.045 29 H 0.111 0.889 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.419 0.581 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.334 0.666 40 H 0.085 0.915 41 H 0.029 0.971 42 H 0.132 0.868 43 H 0.110 0.890 44 H 0.273 0.727 45 H 0.121 0.879 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.316 -19.174 24.121 30.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.373 5.373 3 C 0.299 3.701 4 O -0.466 6.466 5 C -0.135 4.135 6 H 0.140 0.860 7 C -0.139 4.139 8 C -0.154 4.154 9 C -0.154 4.154 10 C -0.013 4.013 11 H 0.057 0.943 12 N -0.304 5.304 13 C -0.004 4.004 14 C -0.158 4.158 15 C -0.082 4.082 16 C -0.224 4.224 17 C 0.066 3.934 18 O -0.140 6.140 19 C -0.489 4.489 20 H 0.120 0.880 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.840 3.160 24 H -0.174 1.174 25 H -0.193 1.193 26 H -0.194 1.194 27 C -0.260 4.260 28 C -0.064 4.064 29 H 0.129 0.871 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.256 0.744 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.152 0.848 40 H 0.103 0.897 41 H 0.047 0.953 42 H 0.150 0.850 43 H 0.128 0.872 44 H 0.082 0.918 45 H 0.139 0.861 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.318 -18.390 23.744 30.034 hybrid contribution -0.621 0.515 -0.747 1.099 sum -0.939 -17.875 22.998 29.142 Atomic orbital electron populations 1.21642 0.79258 1.04128 1.01099 1.45750 1.08148 1.08767 1.74661 1.21038 0.90864 0.83592 0.74616 1.90711 1.71382 1.33165 1.51329 1.22491 0.89618 0.98580 1.02799 0.85951 1.22269 0.96329 1.01786 0.93546 1.22078 0.96676 0.96237 1.00406 1.22190 0.95540 0.98552 0.99136 1.22261 0.96496 0.93358 0.89214 0.94267 1.60792 1.50639 1.07388 1.11535 1.20580 1.00624 0.87690 0.91478 1.19588 0.92469 1.06477 0.97224 1.20806 0.98683 0.96563 0.92131 1.20371 0.94888 1.10225 0.96890 1.19891 0.95220 0.93399 0.84921 1.83945 1.32788 1.74348 1.22889 1.21885 0.82922 1.42628 1.01439 0.88022 1.26624 1.04307 0.95827 0.95408 1.70196 1.31460 1.42829 1.11597 0.84505 0.74597 0.78393 0.78545 1.17363 1.19275 1.19354 1.21267 0.97636 1.09934 0.97142 1.20885 0.98030 0.94761 0.92710 0.87060 0.93268 0.93881 0.74434 0.87971 0.91740 0.90084 0.90672 0.90873 0.92012 0.84819 0.89681 0.95252 0.84978 0.87162 0.91843 0.86139 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 10.70 127.77 1.37 2.33 16 2 N -0.72 -8.75 5.71 -484.51 -2.77 -11.52 16 3 C 0.51 9.92 7.09 87.66 0.62 10.55 16 4 O -0.59 -17.18 15.73 -3.02 -0.05 -17.23 16 5 C -0.11 -1.71 2.70 -10.26 -0.03 -1.74 16 6 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 7 C -0.10 -0.95 6.26 31.67 0.20 -0.75 16 8 C -0.12 -1.19 6.80 31.32 0.21 -0.98 16 9 C -0.12 -1.86 6.46 31.32 0.20 -1.66 16 10 C 0.10 1.97 2.24 45.98 0.10 2.07 16 11 H 0.04 0.98 7.17 -2.39 -0.02 0.97 16 12 N -0.67 -16.83 6.28 -490.07 -3.08 -19.90 16 13 C 0.12 3.44 5.65 85.56 0.48 3.92 16 14 C -0.16 -5.37 5.40 -19.83 -0.11 -5.48 16 15 C -0.06 -2.37 9.69 22.25 0.22 -2.16 16 16 C -0.20 -9.34 9.99 22.39 0.22 -9.12 16 17 C 0.12 6.05 6.65 22.58 0.15 6.20 16 18 O -0.23 -14.49 9.76 -22.81 -0.22 -14.71 16 19 C -0.41 -24.62 9.49 67.92 0.64 -23.97 16 20 H 0.10 5.57 5.21 -2.91 -0.02 5.56 16 21 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 22 N -0.92 -57.79 13.67 21.61 0.30 -57.50 16 23 Si 1.02 43.64 29.55 68.60 2.03 45.66 16 24 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 27 C -0.24 -10.92 9.17 22.39 0.21 -10.71 16 28 C -0.05 -1.66 9.69 22.25 0.22 -1.45 16 29 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.42 2.07 8.83 -92.71 -0.82 1.25 16 33 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.06 0.70 8.04 -2.39 -0.02 0.68 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 1.32 8.04 -2.38 -0.02 1.30 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.33 9.17 8.42 -89.70 -0.76 8.42 16 40 H 0.08 2.12 8.06 -2.39 -0.02 2.10 16 41 H 0.03 0.84 8.02 -2.39 -0.02 0.82 16 42 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 43 H 0.11 5.01 8.06 -2.92 -0.02 4.99 16 44 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 45 H 0.12 5.51 5.64 -2.91 -0.02 5.49 16 46 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -78.75 380.55 0.81 -77.94 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -0.58 Total: 31.16 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 5.18 Total: -33.90 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -5.55 Total: -88.92 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.27 Total: -31.94 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -78.75 0.81 -77.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794575372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.655 kcal (2) G-P(sol) polarization free energy of solvation -78.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds