Wall clock time and date at job start Tue Mar 31 2020 12:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35907 * 116.99904 * 2 1 4 4 C 1.38733 * 120.05387 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.93896 * 180.02562 * 4 3 2 6 6 C 1.38259 * 120.05586 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94192 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47224 * 20.00352 * 7 6 5 9 9 N 1.46906 * 109.47031 * 139.99685 * 7 6 5 10 10 C 1.46900 * 111.00068 * 206.44407 * 9 7 6 11 11 C 1.50692 * 109.47256 * 174.80742 * 10 9 7 12 12 O 1.21283 * 120.00265 * 0.02562 * 11 10 9 13 13 N 1.34785 * 120.00000 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99610 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46925 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99861 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00093 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99981 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99891 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47229 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46745 * 120.00096 * 19 17 15 22 22 H 1.48498 * 109.47213 * 240.00105 * 19 17 15 23 23 C 1.52992 * 109.47484 * 259.99693 * 7 6 5 24 24 C 1.52998 * 117.50069 * 132.62039 * 23 7 6 25 25 C 1.52991 * 60.00291 * 252.51551 * 24 23 7 26 26 C 1.38264 * 120.11308 * 0.25124 * 6 5 4 27 27 C 1.38146 * 120.05427 * 359.45486 * 26 6 5 28 28 H 1.08999 * 109.47312 * 299.99551 * 1 2 3 29 29 H 1.08997 * 109.47192 * 60.00388 * 1 2 3 30 30 H 1.09001 * 109.46812 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.03089 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.96678 * 180.02562 * 5 4 3 33 33 H 1.00896 * 110.99828 * 82.49431 * 9 7 6 34 34 H 1.08999 * 109.47526 * 294.81349 * 10 9 7 35 35 H 1.09010 * 109.46988 * 54.80658 * 10 9 7 36 36 H 0.96992 * 120.00109 * 359.97438 * 13 11 10 37 37 H 1.08998 * 109.47543 * 299.99710 * 14 13 11 38 38 H 1.09000 * 109.47519 * 60.00025 * 14 13 11 39 39 H 0.96998 * 119.99829 * 179.97438 * 18 17 15 40 40 H 1.09003 * 115.55513 * 278.34060 * 23 7 6 41 41 H 1.09000 * 117.49749 * 0.02562 * 24 23 7 42 42 H 1.09003 * 117.50012 * 145.02452 * 24 23 7 43 43 H 1.09004 * 117.50092 * 252.51129 * 25 24 23 44 44 H 1.09001 * 117.51706 * 107.48260 * 25 24 23 45 45 H 1.08009 * 119.96999 * 179.70735 * 26 6 5 46 46 H 1.08002 * 120.02257 * 180.24884 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5171 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0028 8 1 5.0111 4.9044 -0.3494 9 7 3.2625 5.9375 -0.8863 10 6 4.1578 6.9780 -1.4093 11 6 3.4150 7.8222 -2.4125 12 8 2.2538 7.5811 -2.6664 13 7 4.0410 8.8451 -3.0276 14 6 3.3186 9.6661 -4.0024 15 6 4.2375 10.7327 -4.5400 16 1 5.2577 10.7927 -4.1908 17 6 3.7761 11.6312 -5.4785 18 7 2.5339 11.5578 -5.9042 19 14 4.9150 12.9538 -6.1444 20 1 6.2508 12.8225 -5.5090 21 1 5.0493 12.7968 -7.6150 22 1 4.3505 14.2929 -5.8390 23 6 3.9949 5.5852 1.4239 24 6 5.3159 6.1484 1.9516 25 6 4.7843 4.8170 2.4857 26 6 1.9210 3.6047 0.0079 27 6 1.2915 2.3751 0.0013 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0209 0.3800 -0.0005 32 1 5.1345 2.5751 -0.0008 33 1 2.4692 6.3463 -0.4156 34 1 4.5020 7.6075 -0.5887 35 1 5.0156 6.5100 -1.8925 36 1 4.9695 9.0382 -2.8243 37 1 2.9738 9.0368 -4.8229 38 1 2.4614 10.1345 -3.5188 39 1 2.2092 12.1902 -6.5641 40 1 3.0754 6.0784 1.7392 41 1 6.1786 6.1156 1.2861 42 1 5.2658 7.0126 2.6141 43 1 4.3843 4.8051 3.4997 44 1 5.2969 3.9077 2.1719 45 1 1.3341 4.5114 0.0139 46 1 0.2129 2.3202 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796189193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:15 Heat of formation + Delta-G solvation = -47.505138 kcal Electronic energy + Delta-G solvation = -25663.184359 eV Core-core repulsion = 21938.778751 eV Total energy + Delta-G solvation = -3724.405608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.19930 -40.49512 -39.51656 -37.68281 -36.18868 -35.53360 -34.31691 -32.04244 -31.78573 -29.84255 -28.55796 -27.41062 -25.53502 -24.23812 -23.46440 -23.16954 -22.58381 -21.39984 -21.08222 -19.16195 -18.90150 -17.66735 -17.44690 -17.01708 -16.89850 -16.61719 -16.59309 -16.14142 -15.96454 -15.60961 -15.32129 -14.79167 -14.56393 -14.47177 -14.36709 -14.06100 -13.98253 -13.70320 -13.50935 -13.09285 -12.89806 -12.85050 -12.74158 -12.59927 -12.48530 -12.28671 -12.21326 -11.79725 -11.63257 -11.44858 -11.36178 -10.94208 -10.80874 -10.67350 -9.87467 -9.79341 -9.34624 -8.96945 -8.28632 -6.45064 0.46381 0.52405 1.43521 1.44717 1.58174 1.84157 2.30095 2.42241 2.50253 2.81581 2.95790 3.06323 3.33373 3.77742 3.93473 3.95022 4.01405 4.04067 4.13869 4.21700 4.33456 4.34442 4.37716 4.46458 4.48252 4.57046 4.59925 4.68227 4.74287 4.83559 4.85474 5.07510 5.12422 5.14807 5.22479 5.25892 5.31526 5.36404 5.47530 5.50995 5.65319 5.73684 5.86507 5.88125 6.07234 6.32462 6.48674 6.67020 6.98336 7.24747 7.56643 8.83847 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.002330 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.800796 B =12013.499591 C =13133.869690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.106 3.894 4 C -0.161 4.161 5 C -0.075 4.075 6 C -0.102 4.102 7 C 0.170 3.830 8 H 0.100 0.900 9 N -0.677 5.677 10 C 0.060 3.940 11 C 0.492 3.508 12 O -0.592 6.592 13 N -0.710 5.710 14 C 0.267 3.733 15 C -0.553 4.553 16 H 0.085 0.915 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.985 3.015 20 H -0.252 1.252 21 H -0.280 1.280 22 H -0.279 1.279 23 C -0.190 4.190 24 C -0.172 4.172 25 C -0.163 4.163 26 C -0.069 4.069 27 C -0.216 4.216 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.150 0.850 33 H 0.345 0.655 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.408 0.592 37 H -0.016 1.016 38 H -0.014 1.014 39 H 0.268 0.732 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.118 0.882 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.726 -19.871 18.870 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.061 3.939 4 C -0.180 4.180 5 C -0.093 4.093 6 C -0.103 4.103 7 C 0.061 3.939 8 H 0.118 0.882 9 N -0.307 5.307 10 C -0.072 4.072 11 C 0.279 3.721 12 O -0.473 6.473 13 N -0.361 5.361 14 C 0.144 3.856 15 C -0.591 4.591 16 H 0.103 0.897 17 C -0.198 4.198 18 N -0.571 5.571 19 Si 0.808 3.192 20 H -0.175 1.175 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.210 4.210 24 C -0.208 4.208 25 C -0.201 4.201 26 C -0.088 4.088 27 C -0.235 4.235 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.159 0.841 32 H 0.168 0.832 33 H 0.165 0.835 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.244 0.756 37 H 0.002 0.998 38 H 0.004 0.996 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.121 0.879 45 H 0.136 0.864 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.916 -20.538 17.997 27.747 hybrid contribution -0.234 1.592 0.116 1.613 sum 4.682 -18.947 18.113 26.627 Atomic orbital electron populations 1.23275 0.76901 1.05385 1.01861 1.86018 1.23074 1.27028 1.88933 1.19238 0.92974 0.84278 0.97378 1.20602 0.91314 0.99265 1.06814 1.21000 1.00667 0.90302 0.97347 1.19685 0.93483 0.94599 1.02557 1.19975 0.97119 0.88530 0.88290 0.88244 1.60187 1.09889 1.19878 1.40779 1.21755 0.95693 0.93325 0.96461 1.21495 0.87319 0.80751 0.82499 1.90641 1.19613 1.70941 1.66124 1.46175 1.16115 1.31232 1.42558 1.18497 0.92049 0.88910 0.86118 1.21665 0.98825 1.14094 1.24539 0.89685 1.26095 0.96936 1.00479 0.96320 1.70150 1.17453 1.38162 1.31320 0.85103 0.78812 0.77373 0.77870 1.17487 1.20560 1.20496 1.23032 0.96781 1.05764 0.95449 1.23119 0.96374 0.97607 1.03749 1.22902 1.03140 0.95998 0.98059 1.20823 0.94763 0.96887 0.96301 1.21375 1.00669 0.92323 1.09136 0.91937 0.92560 0.86195 0.84143 0.83246 0.83532 0.89513 0.86141 0.75593 0.99830 0.99622 0.92306 0.88562 0.87639 0.88545 0.88746 0.87928 0.86415 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -6.95 10.50 -92.50 -0.97 -7.92 16 3 C 0.11 2.35 6.69 22.50 0.15 2.50 16 4 C -0.16 -3.19 9.99 22.37 0.22 -2.97 16 5 C -0.07 -1.36 9.49 22.25 0.21 -1.15 16 6 C -0.10 -2.14 4.71 -19.85 -0.09 -2.23 16 7 C 0.17 3.21 2.38 44.17 0.11 3.31 16 8 H 0.10 1.61 7.34 -2.39 -0.02 1.59 16 9 N -0.68 -17.29 5.22 -499.46 -2.61 -19.90 16 10 C 0.06 1.51 6.00 85.55 0.51 2.03 16 11 C 0.49 19.42 7.88 87.65 0.69 20.12 16 12 O -0.59 -29.61 16.31 -3.04 -0.05 -29.66 16 13 N -0.71 -29.66 5.55 -466.79 -2.59 -32.25 16 14 C 0.27 14.78 5.43 85.63 0.46 15.24 16 15 C -0.55 -30.10 9.28 25.60 0.24 -29.87 16 16 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 17 C 0.00 0.06 5.46 84.66 0.46 0.52 16 18 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 19 Si 0.99 42.32 29.54 68.60 2.03 44.35 16 20 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 23 C -0.19 -3.07 5.11 -10.80 -0.06 -3.12 16 24 C -0.17 -2.24 10.18 30.59 0.31 -1.93 16 25 C -0.16 -2.17 9.98 30.59 0.31 -1.87 16 26 C -0.07 -1.61 9.32 22.25 0.21 -1.41 16 27 C -0.22 -4.78 9.04 22.36 0.20 -4.58 16 28 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 29 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 30 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 32 H 0.15 1.88 8.03 -2.91 -0.02 1.85 16 33 H 0.35 9.37 7.65 -89.70 -0.69 8.69 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.12 2.52 7.92 -2.38 -0.02 2.50 16 36 H 0.41 13.79 8.32 -92.71 -0.77 13.02 16 37 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 38 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 39 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 40 H 0.10 1.73 7.96 -2.39 -0.02 1.71 16 41 H 0.11 1.18 8.07 -2.39 -0.02 1.16 16 42 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.10 1.23 7.97 -2.39 -0.02 1.21 16 45 H 0.12 2.82 7.30 -2.91 -0.02 2.80 16 46 H 0.13 2.53 6.30 -2.91 -0.02 2.51 16 Total: -1.00 -75.45 387.48 0.68 -74.78 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -0.46 Total: 31.00 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 5.05 Total: -4.02 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.91 Total: -108.52 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -1.02 Total: -37.58 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -75.45 0.68 -74.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796189193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.270 kcal (2) G-P(sol) polarization free energy of solvation -75.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds