Wall clock time and date at job start Tue Mar 31 2020 12:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 114.00509 * 2 1 4 4 C 1.52996 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.42404 * 304.13963 * 4 3 2 6 6 C 1.55380 * 110.34790 * 181.86827 * 4 3 2 7 7 C 1.55139 * 101.44107 * 204.11740 * 6 4 3 8 8 C 1.54326 * 103.17576 * 35.64174 * 7 6 4 9 9 N 1.47435 * 107.23302 * 337.63272 * 8 7 6 10 10 N 1.36604 * 111.00136 * 236.74076 * 9 8 7 11 11 C 1.34777 * 120.00211 * 240.12857 * 10 9 8 12 12 O 1.21277 * 119.99625 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99943 * 180.02562 * 11 10 9 14 14 C 1.50697 * 109.46781 * 179.97438 * 13 11 10 15 15 C 1.37641 * 120.12973 * 264.99405 * 14 13 11 16 16 C 1.38605 * 120.25327 * 179.97438 * 15 14 13 17 17 C 1.38655 * 120.50281 * 0.02562 * 16 15 14 18 18 C 1.37600 * 120.24407 * 0.02562 * 17 16 15 19 19 C 1.40701 * 120.12996 * 84.72871 * 14 13 11 20 20 C 1.41395 * 120.24262 * 359.97438 * 19 14 13 21 21 H 1.07996 * 120.00395 * 333.90566 * 20 19 14 22 22 C 1.39946 * 119.99795 * 153.90429 * 20 19 14 23 23 N 1.30828 * 120.00035 * 343.71175 * 22 20 19 24 24 Si 1.86795 * 119.99911 * 163.71298 * 22 20 19 25 25 H 1.48502 * 109.47112 * 90.00111 * 24 22 20 26 26 H 1.48499 * 109.47238 * 209.99727 * 24 22 20 27 27 H 1.48496 * 109.47372 * 330.00184 * 24 22 20 28 28 H 1.09004 * 109.47654 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47271 * 299.99938 * 1 2 3 30 30 H 1.09007 * 109.47097 * 59.99659 * 1 2 3 31 31 H 1.09006 * 109.46828 * 59.99808 * 3 2 1 32 32 H 1.09000 * 109.46877 * 300.00486 * 3 2 1 33 33 H 1.08998 * 111.17687 * 86.05796 * 6 4 3 34 34 H 1.09002 * 111.00425 * 322.09569 * 6 4 3 35 35 H 1.09002 * 110.70681 * 277.17381 * 7 6 4 36 36 H 1.08995 * 110.71033 * 154.10927 * 7 6 4 37 37 H 1.09001 * 109.88424 * 97.03542 * 8 7 6 38 38 H 1.08996 * 109.88858 * 218.22223 * 8 7 6 39 39 H 0.97003 * 119.99534 * 60.12313 * 10 9 8 40 40 H 1.08998 * 109.46690 * 299.99480 * 13 11 10 41 41 H 1.08994 * 109.47157 * 59.99722 * 13 11 10 42 42 H 1.08004 * 119.87224 * 0.02562 * 15 14 13 43 43 H 1.08001 * 119.74999 * 179.97438 * 16 15 14 44 44 H 1.07996 * 119.88123 * 180.02562 * 17 16 15 45 45 H 1.08000 * 120.12563 * 179.97438 * 18 17 16 46 46 H 0.97001 * 119.99997 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 1 3.8690 0.5831 0.8464 6 6 4.1891 2.5933 0.0482 7 6 5.5795 2.3087 -0.5785 8 6 5.2699 1.2455 -1.6534 9 7 4.0053 0.5917 -1.2697 10 7 4.1697 -0.7589 -1.1483 11 6 3.4535 -1.5973 -1.9234 12 8 2.6628 -1.1525 -2.7283 13 6 3.6344 -3.0873 -1.7891 14 6 2.7240 -3.7934 -2.7605 15 6 1.4878 -4.2384 -2.3503 16 6 0.6482 -4.8876 -3.2417 17 6 1.0421 -5.0970 -4.5545 18 6 2.2739 -4.6616 -4.9863 19 6 3.1321 -3.9953 -4.0918 20 6 4.3972 -3.5371 -4.5261 21 1 4.8696 -2.7031 -4.0285 22 6 5.0373 -4.1643 -5.6010 23 7 4.6419 -5.3464 -5.9984 24 14 6.4562 -3.3136 -6.4684 25 1 7.7341 -3.6881 -5.8111 26 1 6.4900 -3.7346 -7.8921 27 1 6.2727 -1.8421 -6.3915 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 4.2884 2.9469 1.0744 34 1 3.6269 3.3054 -0.5560 35 1 6.2656 1.9118 0.1697 36 1 5.9884 3.2101 -1.0348 37 1 5.1597 1.7235 -2.6268 38 1 6.0725 0.5089 -1.6884 39 1 4.8019 -1.1146 -0.5043 40 1 4.6702 -3.3485 -2.0058 41 1 3.3876 -3.3931 -0.7724 42 1 1.1705 -4.0804 -1.3301 43 1 -0.3199 -5.2338 -2.9110 44 1 0.3797 -5.6036 -5.2408 45 1 2.5790 -4.8260 -6.0092 46 1 5.0859 -5.7813 -6.7432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862595350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:34 Heat of formation + Delta-G solvation = -28.391175 kcal Electronic energy + Delta-G solvation = -27649.111039 eV Core-core repulsion = 23925.534274 eV Total energy + Delta-G solvation = -3723.576765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.96364 -38.26857 -37.29315 -36.78782 -33.70194 -33.51726 -31.56930 -30.72130 -29.37351 -28.85828 -26.72889 -26.25190 -24.89135 -24.42975 -21.46598 -20.97702 -20.78708 -20.26059 -19.19652 -17.42379 -17.03373 -16.51017 -16.10567 -15.70198 -15.31307 -15.27150 -14.71224 -14.45531 -14.19873 -13.85656 -13.68090 -13.38921 -13.04894 -12.84612 -12.52115 -12.42803 -12.37690 -11.91264 -11.60157 -11.48139 -11.44325 -11.22019 -11.12534 -11.05042 -10.92084 -10.87830 -10.81665 -10.60146 -10.30690 -9.47559 -9.37154 -9.26688 -9.06249 -8.86622 -8.58975 -8.55185 -7.19438 -7.17668 -6.64125 -4.23559 2.84983 2.99911 3.12088 3.18360 3.35479 3.35947 3.69313 3.81236 4.01503 4.32875 4.48319 4.73920 4.76393 4.97175 5.07080 5.18965 5.30212 5.41095 5.46147 5.50528 5.53108 5.60636 5.63534 5.74466 5.78474 5.89303 5.92988 5.96539 6.03476 6.15821 6.26976 6.40840 6.54871 6.62250 6.77497 6.90467 7.18678 7.36442 7.40903 7.53432 7.75321 7.90631 8.01816 8.12129 8.20568 8.24226 8.42854 8.75970 9.02539 9.12742 9.37509 10.30023 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012139 B = 0.004869 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.997280 B = 5749.457730 C = 7680.189363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.373 6.373 3 C 0.082 3.918 4 C 0.054 3.946 5 H 0.069 0.931 6 C -0.121 4.121 7 C -0.142 4.142 8 C 0.020 3.980 9 N -0.270 5.270 10 N -0.594 5.594 11 C 0.537 3.463 12 O -0.492 6.492 13 C -0.066 4.066 14 C -0.175 4.175 15 C -0.079 4.079 16 C -0.240 4.240 17 C -0.108 4.108 18 C -0.160 4.160 19 C 0.129 3.871 20 C -0.454 4.454 21 H 0.074 0.926 22 C 0.077 3.923 23 N -0.797 5.797 24 Si 0.901 3.099 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.262 1.262 28 H 0.084 0.916 29 H 0.031 0.969 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.371 0.629 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.116 0.884 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 12.504 12.491 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.291 6.291 3 C 0.004 3.996 4 C -0.055 4.055 5 H 0.087 0.913 6 C -0.160 4.160 7 C -0.181 4.181 8 C -0.108 4.108 9 N -0.087 5.087 10 N -0.343 5.343 11 C 0.325 3.675 12 O -0.361 6.361 13 C -0.107 4.107 14 C -0.177 4.177 15 C -0.097 4.097 16 C -0.259 4.259 17 C -0.127 4.127 18 C -0.179 4.179 19 C 0.127 3.873 20 C -0.484 4.484 21 H 0.092 0.908 22 C -0.140 4.140 23 N -0.423 5.423 24 Si 0.725 3.275 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.186 1.186 28 H 0.102 0.898 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.209 0.791 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.134 0.866 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.944 12.498 11.288 16.867 hybrid contribution 1.388 0.383 0.531 1.535 sum 2.332 12.881 11.818 17.636 Atomic orbital electron populations 1.22651 0.81395 1.02735 0.99090 1.87964 1.19210 1.26809 1.95167 1.22367 0.91966 0.85652 0.99613 1.23184 0.94712 0.95274 0.92292 0.91318 1.22745 0.95912 0.95824 1.01542 1.22807 0.96993 0.99828 0.98435 1.23422 0.91237 0.96560 0.99549 1.64359 1.25657 0.91126 1.27519 1.45820 1.45607 0.99877 1.42967 1.20962 0.79356 0.87850 0.79379 1.90636 1.33666 1.77841 1.33981 1.20220 1.01981 0.89373 0.99112 1.19039 0.96144 1.08537 0.94024 1.20284 0.93879 0.98519 0.97013 1.20285 0.99667 1.10903 0.95073 1.20659 0.96504 1.00404 0.95097 1.21277 0.92957 1.03726 0.99923 1.17328 0.92098 0.88571 0.89299 1.19459 1.02191 1.14056 1.12706 0.90809 1.25864 0.98169 0.93892 0.96077 1.69828 1.37930 1.11523 1.23036 0.86434 0.80989 0.81113 0.78918 1.19662 1.20165 1.18550 0.89751 0.95018 0.94131 0.93659 0.92600 0.90328 0.90094 0.91326 0.90316 0.89383 0.91367 0.79118 0.88959 0.90794 0.89799 0.89810 0.89718 0.86607 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 11.01 101.05 1.11 1.62 16 2 O -0.37 -5.99 10.66 -35.23 -0.38 -6.37 16 3 C 0.08 1.06 5.62 37.16 0.21 1.27 16 4 C 0.05 0.65 2.95 -65.93 -0.19 0.46 16 5 H 0.07 0.80 8.01 -51.93 -0.42 0.39 16 6 C -0.12 -1.06 6.53 -24.34 -0.16 -1.22 16 7 C -0.14 -1.23 6.93 -24.91 -0.17 -1.40 16 8 C 0.02 0.25 7.10 -2.84 -0.02 0.23 16 9 N -0.27 -4.09 4.67 -103.58 -0.48 -4.58 16 10 N -0.59 -9.70 4.51 31.22 0.14 -9.56 16 11 C 0.54 11.21 7.53 -10.99 -0.08 11.13 16 12 O -0.49 -12.60 16.36 5.56 0.09 -12.51 16 13 C -0.07 -1.35 5.18 -29.04 -0.15 -1.50 16 14 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 15 C -0.08 -1.88 9.66 -39.66 -0.38 -2.26 16 16 C -0.24 -5.75 10.05 -39.29 -0.39 -6.15 16 17 C -0.11 -2.72 10.02 -39.66 -0.40 -3.11 16 18 C -0.16 -4.38 8.69 -38.87 -0.34 -4.72 16 19 C 0.13 3.55 5.56 -106.82 -0.59 2.96 16 20 C -0.45 -12.26 8.14 -37.74 -0.31 -12.57 16 21 H 0.07 1.95 6.67 -52.49 -0.35 1.60 16 22 C 0.08 1.97 5.16 -17.34 -0.09 1.89 16 23 N -0.80 -21.02 10.96 55.55 0.61 -20.41 16 24 Si 0.90 19.32 29.59 -169.99 -5.03 14.29 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 27 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 0.83 7.84 -51.93 -0.41 0.42 16 39 H 0.37 4.90 8.83 -185.15 -1.63 3.27 16 40 H 0.09 1.85 7.08 -51.93 -0.37 1.48 16 41 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 42 H 0.08 1.79 8.06 -52.48 -0.42 1.36 16 43 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.08 1.90 8.06 -52.49 -0.42 1.48 16 45 H 0.12 3.26 6.20 -52.49 -0.33 2.94 16 46 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -33.16 379.12 -10.30 -43.47 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -8.54 Total: 8.16 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -2.42 Total: -18.21 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.27 Total: -34.54 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.28 Total: -18.87 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.16 -10.30 -43.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862595350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.076 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds