Wall clock time and date at job start Tue Mar 31 2020 12:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99838 * 2 1 4 4 C 1.53002 * 109.46933 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47361 * 299.99795 * 4 3 2 6 6 O 1.21273 * 120.00336 * 240.00344 * 5 4 3 7 7 N 1.34774 * 119.99604 * 59.99786 * 5 4 3 8 8 C 1.39274 * 120.00108 * 175.36802 * 7 5 4 9 9 C 1.39674 * 119.57860 * 185.57074 * 8 7 5 10 10 C 1.38650 * 119.49223 * 179.97438 * 9 8 7 11 11 C 1.38339 * 118.67635 * 0.02562 * 10 9 8 12 12 C 1.40584 * 119.12736 * 359.97438 * 11 10 9 13 13 C 1.41337 * 119.78437 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00434 * 5.55613 * 13 12 11 15 15 C 1.40031 * 119.99574 * 185.55576 * 13 12 11 16 16 N 1.30743 * 120.00260 * 354.94020 * 15 13 12 17 17 Si 1.86801 * 119.99804 * 174.93738 * 15 13 12 18 18 H 1.48500 * 109.47268 * 95.00255 * 17 15 13 19 19 H 1.48508 * 109.47094 * 214.99697 * 17 15 13 20 20 H 1.48499 * 109.47162 * 334.99564 * 17 15 13 21 21 N 1.31909 * 119.57022 * 5.29981 * 8 7 5 22 22 C 1.52999 * 109.47002 * 179.97438 * 4 3 2 23 23 C 1.53002 * 109.47002 * 179.97438 * 22 4 3 24 24 C 1.52999 * 109.47217 * 60.00385 * 23 22 4 25 25 C 1.52999 * 109.46821 * 299.99727 * 24 23 22 26 26 C 1.52998 * 109.47501 * 60.00017 * 25 24 23 27 27 H 1.09003 * 109.47250 * 59.99759 * 1 2 3 28 28 H 1.08995 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46812 * 299.99640 * 1 2 3 30 30 H 1.08992 * 109.47228 * 60.00166 * 3 2 1 31 31 H 1.09003 * 109.47086 * 299.99862 * 3 2 1 32 32 H 0.96997 * 120.00804 * 355.37682 * 7 5 4 33 33 H 1.07994 * 120.24739 * 359.97438 * 9 8 7 34 34 H 1.08007 * 120.66400 * 180.02562 * 10 9 8 35 35 H 1.07997 * 120.44279 * 179.97438 * 11 10 9 36 36 H 0.96999 * 120.00507 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.47478 * 59.99814 * 22 4 3 38 38 H 1.09003 * 109.47069 * 299.99557 * 22 4 3 39 39 H 1.08993 * 109.47365 * 299.99691 * 23 22 4 40 40 H 1.09007 * 109.46724 * 180.02562 * 23 22 4 41 41 H 1.08993 * 109.47520 * 59.99401 * 24 23 22 42 42 H 1.09002 * 109.47153 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.47478 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.47522 * 300.00302 * 25 24 23 45 45 H 1.08996 * 109.47633 * 179.97438 * 26 25 24 46 46 H 1.09003 * 109.47026 * 59.99664 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9807 0.4367 1.2295 6 8 4.7225 0.9690 2.0276 7 7 3.5543 -0.8239 1.4427 8 6 4.0406 -1.5495 2.5275 9 6 3.6839 -2.8918 2.6747 10 6 4.1696 -3.6126 3.7550 11 6 4.9982 -2.9743 4.6603 12 6 5.3206 -1.6212 4.4569 13 6 6.1665 -0.9556 5.3729 14 1 6.6348 -1.5072 6.1746 15 6 6.3973 0.4193 5.2409 16 7 5.9116 1.0682 4.2151 17 14 7.3993 1.3261 6.5305 18 1 8.8156 1.4059 6.0911 19 1 6.8571 2.6977 6.7044 20 1 7.3218 0.5959 7.8212 21 7 4.8366 -0.9615 3.3996 22 6 4.1577 2.5824 -0.0013 23 6 5.6830 2.4616 -0.0013 24 6 6.1344 1.7019 -1.2502 25 6 5.5121 0.3042 -1.2496 26 6 3.9869 0.4249 -1.2496 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 2.9087 -1.2260 0.8407 33 1 3.0348 -3.3646 1.9526 34 1 3.9062 -4.6517 3.8871 35 1 5.3924 -3.5084 5.5122 36 1 6.0718 2.0205 4.1234 37 1 3.8365 3.1237 0.8887 38 1 3.8357 3.1231 -0.8913 39 1 6.0047 1.9212 0.8889 40 1 6.1263 3.4575 -0.0013 41 1 5.8127 2.2423 -2.1404 42 1 7.2210 1.6154 -1.2500 43 1 5.8340 -0.2373 -2.1391 44 1 5.8337 -0.2364 -0.3594 45 1 3.5436 -0.5709 -1.2496 46 1 3.6652 0.9654 -2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882468589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:05 Heat of formation + Delta-G solvation = -38.476267 kcal Electronic energy + Delta-G solvation = -28759.243000 eV Core-core repulsion = 25035.228913 eV Total energy + Delta-G solvation = -3724.014087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38159 -38.20315 -37.40462 -36.26219 -33.97114 -32.93702 -31.94997 -30.44860 -30.20000 -28.76126 -27.09062 -25.48241 -25.06997 -23.18188 -22.35634 -21.42054 -20.85174 -20.10592 -18.51031 -17.43958 -16.42672 -16.12701 -16.01492 -15.55441 -15.21837 -14.62451 -14.42887 -14.34263 -13.92134 -13.74594 -13.50280 -13.39791 -13.17101 -12.79380 -12.50078 -12.07694 -11.95539 -11.87139 -11.84166 -11.63835 -11.45251 -11.17775 -11.08377 -10.88765 -10.75871 -10.57766 -10.40526 -10.30221 -9.92579 -9.88336 -9.85911 -9.64627 -9.45604 -8.88192 -8.57672 -7.86401 -7.07732 -6.80101 -6.07038 -4.31845 2.86442 3.13974 3.20638 3.23255 3.33422 3.60100 3.92636 4.06009 4.11399 4.82602 4.91797 4.98830 5.04868 5.20053 5.26939 5.33440 5.41767 5.42372 5.52338 5.62534 5.63588 5.67952 5.76588 5.80342 5.89652 6.05537 6.12517 6.14080 6.22146 6.24022 6.41677 6.51326 6.56644 6.57829 6.61299 6.82692 6.92944 6.97199 7.04082 7.10881 7.34099 7.67033 7.77822 7.90712 8.20936 8.32167 8.65514 8.84173 9.14534 9.47824 10.35209 10.55487 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.005749 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.170411 B = 4869.025212 C = 6113.734370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.389 6.389 3 C 0.075 3.925 4 C -0.077 4.077 5 C 0.489 3.511 6 O -0.409 6.409 7 N -0.655 5.655 8 C 0.374 3.626 9 C -0.356 4.356 10 C -0.037 4.037 11 C -0.308 4.308 12 C 0.272 3.728 13 C -0.429 4.429 14 H 0.080 0.920 15 C 0.060 3.940 16 N -0.655 5.655 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.264 1.264 21 N -0.473 5.473 22 C -0.085 4.085 23 C -0.134 4.134 24 C -0.114 4.114 25 C -0.123 4.123 26 C -0.097 4.097 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.405 0.595 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.270 0.730 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.106 0.894 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.901 3.568 -12.085 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.308 6.308 3 C -0.002 4.002 4 C -0.081 4.081 5 C 0.270 3.730 6 O -0.274 6.274 7 N -0.304 5.304 8 C 0.135 3.865 9 C -0.382 4.382 10 C -0.062 4.062 11 C -0.331 4.331 12 C 0.147 3.853 13 C -0.459 4.459 14 H 0.098 0.902 15 C -0.169 4.169 16 N -0.274 5.274 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.188 1.188 21 N -0.192 5.192 22 C -0.123 4.123 23 C -0.171 4.171 24 C -0.152 4.152 25 C -0.161 4.161 26 C -0.135 4.135 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.243 0.757 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.999 4.974 -11.739 14.090 hybrid contribution -0.550 -0.548 0.283 0.826 sum -6.549 4.426 -11.456 13.918 Atomic orbital electron populations 1.22710 0.80872 1.02802 0.99772 1.87721 1.19796 1.27973 1.95332 1.22539 0.92407 0.84761 1.00510 1.21026 0.93357 0.97648 0.96041 1.20266 0.83167 0.82372 0.87183 1.91044 1.29576 1.64639 1.42097 1.43554 1.44717 1.14372 1.27727 1.18717 0.92323 0.87316 0.88139 1.20524 1.16878 0.95108 1.05652 1.20548 0.95149 0.96926 0.93532 1.21609 1.10204 0.97812 1.03505 1.18397 0.89870 0.87839 0.89219 1.19532 1.23340 0.93050 1.10019 0.90173 1.26139 0.96294 0.98443 0.95974 1.70337 1.27119 1.08586 1.21341 0.86562 0.80370 0.79288 0.82082 1.19816 1.20374 1.18803 1.68744 1.12927 1.34335 1.03167 1.21225 0.96510 0.93149 1.01414 1.21807 0.94499 1.00435 1.00391 1.21499 0.99808 0.95833 0.98036 1.21563 0.94932 0.97446 1.02151 1.21461 0.96162 1.00364 0.95518 0.94271 0.89553 0.94072 0.92802 0.92723 0.75744 0.89249 0.88838 0.88768 0.91812 0.91289 0.92309 0.87611 0.92759 0.92944 0.92467 0.92316 0.91279 0.91103 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.39 -5.13 7.46 -35.23 -0.26 -5.39 16 3 C 0.07 0.97 4.80 37.16 0.18 1.14 16 4 C -0.08 -1.15 0.53 -155.66 -0.08 -1.24 16 5 C 0.49 9.90 4.92 -10.99 -0.05 9.85 16 6 O -0.41 -9.91 9.49 5.56 0.05 -9.86 16 7 N -0.65 -13.68 4.97 -11.40 -0.06 -13.73 16 8 C 0.37 9.40 7.43 -154.97 -1.15 8.25 16 9 C -0.36 -8.35 9.96 -38.89 -0.39 -8.74 16 10 C -0.04 -0.88 10.15 -39.39 -0.40 -1.28 16 11 C -0.31 -7.97 9.83 -38.66 -0.38 -8.35 16 12 C 0.27 7.77 6.54 -85.00 -0.56 7.22 16 13 C -0.43 -11.95 9.13 -37.73 -0.34 -12.30 16 14 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 15 C 0.06 1.60 5.49 -17.34 -0.10 1.50 16 16 N -0.66 -18.00 9.08 55.55 0.50 -17.49 16 17 Si 0.89 19.45 29.56 -169.99 -5.03 14.43 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 21 N -0.47 -13.38 5.74 -10.25 -0.06 -13.44 16 22 C -0.09 -1.21 4.37 -26.73 -0.12 -1.33 16 23 C -0.13 -2.08 5.63 -26.73 -0.15 -2.23 16 24 C -0.11 -1.56 5.92 -26.73 -0.16 -1.72 16 25 C -0.12 -1.79 5.70 -26.73 -0.15 -1.94 16 26 C -0.10 -1.30 4.49 -26.73 -0.12 -1.42 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.41 7.38 6.04 -40.82 -0.25 7.14 16 33 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 35 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.27 6.95 8.29 -40.82 -0.34 6.61 16 37 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.11 2.12 5.51 -51.93 -0.29 1.83 16 40 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.26 7.21 -51.93 -0.37 0.88 16 45 H 0.07 0.97 7.21 -51.93 -0.37 0.59 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -31.53 357.48 -9.49 -41.01 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -7.17 Total: 10.21 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -2.86 Total: -11.12 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.39 Total: -44.67 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.21 Total: -15.25 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.53 -9.49 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882468589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.536 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds