Wall clock time and date at job start Tue Mar 31 2020 12:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99838 * 2 1 4 4 C 1.53002 * 109.46933 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47361 * 299.99795 * 4 3 2 6 6 O 1.21273 * 120.00336 * 240.00344 * 5 4 3 7 7 N 1.34774 * 119.99604 * 59.99786 * 5 4 3 8 8 C 1.39274 * 120.00108 * 175.36802 * 7 5 4 9 9 C 1.39674 * 119.57860 * 185.57074 * 8 7 5 10 10 C 1.38650 * 119.49223 * 179.97438 * 9 8 7 11 11 C 1.38339 * 118.67635 * 0.02562 * 10 9 8 12 12 C 1.40584 * 119.12736 * 359.97438 * 11 10 9 13 13 C 1.41337 * 119.78437 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00434 * 5.55613 * 13 12 11 15 15 C 1.40031 * 119.99574 * 185.55576 * 13 12 11 16 16 N 1.30743 * 120.00260 * 354.94020 * 15 13 12 17 17 Si 1.86801 * 119.99804 * 174.93738 * 15 13 12 18 18 H 1.48500 * 109.47268 * 95.00255 * 17 15 13 19 19 H 1.48508 * 109.47094 * 214.99697 * 17 15 13 20 20 H 1.48499 * 109.47162 * 334.99564 * 17 15 13 21 21 N 1.31909 * 119.57022 * 5.29981 * 8 7 5 22 22 C 1.52999 * 109.47002 * 179.97438 * 4 3 2 23 23 C 1.53002 * 109.47002 * 179.97438 * 22 4 3 24 24 C 1.52999 * 109.47217 * 60.00385 * 23 22 4 25 25 C 1.52999 * 109.46821 * 299.99727 * 24 23 22 26 26 C 1.52998 * 109.47501 * 60.00017 * 25 24 23 27 27 H 1.09003 * 109.47250 * 59.99759 * 1 2 3 28 28 H 1.08995 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46812 * 299.99640 * 1 2 3 30 30 H 1.08992 * 109.47228 * 60.00166 * 3 2 1 31 31 H 1.09003 * 109.47086 * 299.99862 * 3 2 1 32 32 H 0.96997 * 120.00804 * 355.37682 * 7 5 4 33 33 H 1.07994 * 120.24739 * 359.97438 * 9 8 7 34 34 H 1.08007 * 120.66400 * 180.02562 * 10 9 8 35 35 H 1.07997 * 120.44279 * 179.97438 * 11 10 9 36 36 H 0.96999 * 120.00507 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.47478 * 59.99814 * 22 4 3 38 38 H 1.09003 * 109.47069 * 299.99557 * 22 4 3 39 39 H 1.08993 * 109.47365 * 299.99691 * 23 22 4 40 40 H 1.09007 * 109.46724 * 180.02562 * 23 22 4 41 41 H 1.08993 * 109.47520 * 59.99401 * 24 23 22 42 42 H 1.09002 * 109.47153 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.47478 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.47522 * 300.00302 * 25 24 23 45 45 H 1.08996 * 109.47633 * 179.97438 * 26 25 24 46 46 H 1.09003 * 109.47026 * 59.99664 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9807 0.4367 1.2295 6 8 4.7225 0.9690 2.0276 7 7 3.5543 -0.8239 1.4427 8 6 4.0406 -1.5495 2.5275 9 6 3.6839 -2.8918 2.6747 10 6 4.1696 -3.6126 3.7550 11 6 4.9982 -2.9743 4.6603 12 6 5.3206 -1.6212 4.4569 13 6 6.1665 -0.9556 5.3729 14 1 6.6348 -1.5072 6.1746 15 6 6.3973 0.4193 5.2409 16 7 5.9116 1.0682 4.2151 17 14 7.3993 1.3261 6.5305 18 1 8.8156 1.4059 6.0911 19 1 6.8571 2.6977 6.7044 20 1 7.3218 0.5959 7.8212 21 7 4.8366 -0.9615 3.3996 22 6 4.1577 2.5824 -0.0013 23 6 5.6830 2.4616 -0.0013 24 6 6.1344 1.7019 -1.2502 25 6 5.5121 0.3042 -1.2496 26 6 3.9869 0.4249 -1.2496 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 2.9087 -1.2260 0.8407 33 1 3.0348 -3.3646 1.9526 34 1 3.9062 -4.6517 3.8871 35 1 5.3924 -3.5084 5.5122 36 1 6.0718 2.0205 4.1234 37 1 3.8365 3.1237 0.8887 38 1 3.8357 3.1231 -0.8913 39 1 6.0047 1.9212 0.8889 40 1 6.1263 3.4575 -0.0013 41 1 5.8127 2.2423 -2.1404 42 1 7.2210 1.6154 -1.2500 43 1 5.8340 -0.2373 -2.1391 44 1 5.8337 -0.2364 -0.3594 45 1 3.5436 -0.5709 -1.2496 46 1 3.6652 0.9654 -2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882468589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:04 Heat of formation + Delta-G solvation = -56.599496 kcal Electronic energy + Delta-G solvation = -28760.028882 eV Core-core repulsion = 25035.228913 eV Total energy + Delta-G solvation = -3724.799969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.76153 -39.96988 -38.50400 -37.72233 -35.81204 -34.78749 -33.13754 -32.17566 -31.65872 -30.62522 -27.95487 -27.45661 -26.03679 -24.77199 -23.50913 -23.28593 -22.41889 -21.48843 -20.13139 -19.25298 -17.97911 -17.35791 -17.13878 -16.84568 -16.41307 -16.35322 -16.23456 -15.69255 -15.53014 -15.13597 -14.95244 -14.83847 -14.61108 -14.32807 -13.88587 -13.76301 -13.36341 -13.05175 -12.94958 -12.89873 -12.78077 -12.70076 -12.64014 -12.54973 -12.30989 -12.12655 -11.93538 -11.77054 -11.61022 -11.29987 -11.03899 -10.96726 -10.75761 -10.58519 -10.21636 -9.85704 -8.97705 -8.70542 -8.02923 -6.39606 0.95666 1.27747 1.38619 1.49609 1.53820 2.25007 2.26643 2.44691 2.80798 3.03260 3.70462 3.73966 3.90136 4.07704 4.09520 4.24393 4.29233 4.37079 4.43916 4.52104 4.54001 4.60576 4.62987 4.66643 4.70418 4.77789 4.80217 4.91175 4.92776 4.95175 4.97340 5.07338 5.12788 5.15393 5.28394 5.32662 5.35910 5.42679 5.45624 5.71205 5.75853 5.94356 5.97522 6.19576 6.21049 6.43197 6.82010 6.95530 7.14225 7.87409 8.40085 8.59283 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.005749 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.170411 B = 4869.025212 C = 6113.734370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.410 6.410 3 C 0.078 3.922 4 C -0.068 4.068 5 C 0.476 3.524 6 O -0.453 6.453 7 N -0.648 5.648 8 C 0.352 3.648 9 C -0.352 4.352 10 C -0.034 4.034 11 C -0.334 4.334 12 C 0.237 3.763 13 C -0.467 4.467 14 H 0.083 0.917 15 C 0.013 3.987 16 N -0.685 5.685 17 Si 0.972 3.028 18 H -0.267 1.267 19 H -0.272 1.272 20 H -0.257 1.257 21 N -0.503 5.503 22 C -0.081 4.081 23 C -0.134 4.134 24 C -0.108 4.108 25 C -0.122 4.122 26 C -0.090 4.090 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.034 0.966 30 H 0.038 0.962 31 H 0.095 0.905 32 H 0.417 0.583 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.102 0.898 36 H 0.269 0.731 37 H 0.048 0.952 38 H 0.102 0.898 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.017 0.983 45 H 0.068 0.932 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 4.012 -14.625 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.329 6.329 3 C 0.002 3.998 4 C -0.071 4.071 5 C 0.261 3.739 6 O -0.319 6.319 7 N -0.298 5.298 8 C 0.113 3.887 9 C -0.377 4.377 10 C -0.058 4.058 11 C -0.356 4.356 12 C 0.111 3.889 13 C -0.498 4.498 14 H 0.101 0.899 15 C -0.213 4.213 16 N -0.304 5.304 17 Si 0.793 3.207 18 H -0.192 1.192 19 H -0.197 1.197 20 H -0.181 1.181 21 N -0.223 5.223 22 C -0.119 4.119 23 C -0.172 4.172 24 C -0.146 4.146 25 C -0.160 4.160 26 C -0.128 4.128 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.113 0.887 32 H 0.257 0.743 33 H 0.141 0.859 34 H 0.152 0.848 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.120 0.880 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.036 0.964 45 H 0.087 0.913 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.519 5.394 -14.315 17.045 hybrid contribution -0.165 -0.792 0.989 1.277 sum -7.684 4.602 -13.326 16.056 Atomic orbital electron populations 1.22893 0.79148 1.03843 1.00708 1.87670 1.21650 1.28078 1.95510 1.22515 0.90526 0.85078 1.01696 1.21013 0.95163 0.97217 0.93751 1.21359 0.82113 0.81987 0.88484 1.91052 1.31227 1.65467 1.44193 1.43646 1.44719 1.14711 1.26715 1.19266 0.92014 0.88676 0.88756 1.20960 1.16255 0.94539 1.05991 1.20989 0.93628 0.98713 0.92484 1.21785 1.11664 0.97312 1.04887 1.18906 0.90713 0.89351 0.89889 1.19845 1.24800 0.94323 1.10845 0.89930 1.26984 0.97330 0.98788 0.98173 1.70532 1.28305 1.08541 1.23005 0.85360 0.78498 0.77754 0.79081 1.19221 1.19733 1.18070 1.68730 1.14170 1.35530 1.03890 1.21238 0.95266 0.92921 1.02466 1.21708 0.95889 1.00435 0.99160 1.21474 0.99452 0.95382 0.98263 1.21546 0.96218 0.97612 1.00609 1.21472 0.94858 1.00604 0.95845 0.91728 0.88568 0.94698 0.94354 0.88684 0.74293 0.85891 0.84803 0.87951 0.92014 0.93293 0.87968 0.92999 0.91757 0.89307 0.93153 0.90166 0.96431 0.91323 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -9.81 7.46 -148.98 -1.11 -10.92 16 3 C 0.08 1.83 4.80 71.98 0.35 2.18 16 4 C -0.07 -1.94 0.53 -52.93 -0.03 -1.97 16 5 C 0.48 19.94 4.92 87.66 0.43 20.38 16 6 O -0.45 -23.38 9.49 -3.01 -0.03 -23.41 16 7 N -0.65 -27.58 4.97 -308.37 -1.53 -29.11 16 8 C 0.35 18.21 7.43 133.25 0.99 19.20 16 9 C -0.35 -16.34 9.96 22.72 0.23 -16.12 16 10 C -0.03 -1.58 10.15 22.39 0.23 -1.35 16 11 C -0.33 -17.72 9.83 22.87 0.22 -17.50 16 12 C 0.24 14.25 6.54 40.20 0.26 14.51 16 13 C -0.47 -27.48 9.13 23.47 0.21 -27.27 16 14 H 0.08 4.58 7.85 -2.91 -0.02 4.56 16 15 C 0.01 0.72 5.49 85.29 0.47 1.19 16 16 N -0.68 -40.01 9.08 21.84 0.20 -39.81 16 17 Si 0.97 41.79 29.56 68.60 2.03 43.82 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 N -0.50 -30.01 5.74 -186.35 -1.07 -31.08 16 22 C -0.08 -2.20 4.37 30.59 0.13 -2.06 16 23 C -0.13 -4.20 5.63 30.59 0.17 -4.03 16 24 C -0.11 -2.79 5.92 30.59 0.18 -2.61 16 25 C -0.12 -3.41 5.70 30.59 0.17 -3.23 16 26 C -0.09 -2.16 4.49 30.59 0.14 -2.02 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.42 15.01 6.04 -92.71 -0.56 14.45 16 33 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 34 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 35 H 0.10 5.08 8.06 -2.91 -0.02 5.05 16 36 H 0.27 14.79 8.29 -92.71 -0.77 14.02 16 37 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 38 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.05 2.23 5.51 -2.39 -0.01 2.22 16 40 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.02 0.65 7.21 -2.39 -0.02 0.63 16 45 H 0.07 1.69 7.21 -2.39 -0.02 1.67 16 46 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -75.36 357.48 4.31 -71.05 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: 0.42 Total: 38.43 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 5.41 Total: -18.95 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -2.40 Total: -100.01 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -1.14 Total: -34.33 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -75.36 4.31 -71.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882468589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.447 kcal (2) G-P(sol) polarization free energy of solvation -75.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds