Wall clock time and date at job start Tue Mar 31 2020 12:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99624 * 2 1 4 4 C 1.53002 * 109.46992 * 209.99632 * 3 2 1 5 5 C 1.53000 * 109.47423 * 300.00084 * 4 3 2 6 6 C 1.52994 * 109.47000 * 300.00048 * 5 4 3 7 7 C 1.52999 * 109.46969 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47224 * 175.00076 * 7 6 5 9 9 O 1.21280 * 120.00085 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00304 * 180.02562 * 8 7 6 11 11 C 1.39264 * 120.00083 * 183.71546 * 10 8 7 12 12 C 1.39672 * 119.57839 * 339.11692 * 11 10 8 13 13 C 1.38647 * 119.49720 * 179.97438 * 12 11 10 14 14 C 1.38349 * 118.67057 * 359.73477 * 13 12 11 15 15 C 1.40569 * 119.12801 * 0.53079 * 14 13 12 16 16 C 1.41343 * 119.78758 * 179.73051 * 15 14 13 17 17 H 1.07998 * 119.99929 * 4.87097 * 16 15 14 18 18 C 1.40033 * 119.99988 * 184.86829 * 16 15 14 19 19 N 1.30743 * 120.00160 * 184.82463 * 18 16 15 20 20 Si 1.86802 * 119.99793 * 4.81838 * 18 16 15 21 21 H 1.48502 * 109.46823 * 179.97438 * 20 18 16 22 22 H 1.48496 * 109.47239 * 299.99768 * 20 18 16 23 23 H 1.48497 * 109.46974 * 60.00365 * 20 18 16 24 24 N 1.31911 * 119.57433 * 159.10262 * 11 10 8 25 25 C 1.53001 * 109.47294 * 60.00053 * 6 5 4 26 26 C 1.52999 * 109.46942 * 90.00029 * 3 2 1 27 27 H 1.08999 * 109.47351 * 300.00316 * 1 2 3 28 28 H 1.09004 * 109.46990 * 60.00470 * 1 2 3 29 29 H 1.09001 * 109.46908 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47504 * 329.99967 * 3 2 1 31 31 H 1.09003 * 109.47119 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46675 * 60.00677 * 4 3 2 33 33 H 1.08997 * 109.47369 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46704 * 59.99913 * 5 4 3 35 35 H 1.08992 * 109.47369 * 299.99822 * 6 5 4 36 36 H 1.09004 * 109.47283 * 55.00222 * 7 6 5 37 37 H 1.09000 * 109.47595 * 295.00275 * 7 6 5 38 38 H 0.97000 * 119.99863 * 3.72159 * 10 8 7 39 39 H 1.08004 * 120.24890 * 359.96085 * 12 11 10 40 40 H 1.08003 * 120.66914 * 180.02562 * 13 12 11 41 41 H 1.08000 * 120.43455 * 180.28290 * 14 13 12 42 42 H 0.96999 * 119.99396 * 354.98430 * 19 18 16 43 43 H 1.09000 * 109.47398 * 59.99530 * 25 6 5 44 44 H 1.09003 * 109.47230 * 180.02562 * 25 6 5 45 45 H 1.09000 * 109.47083 * 179.97438 * 26 3 2 46 46 H 1.09003 * 109.47405 * 299.99403 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.3589 1.2633 -0.7212 5 6 4.2927 0.2894 0.0001 6 6 4.5001 0.7553 1.4425 7 6 5.4334 -0.2190 2.1640 8 6 5.7358 0.3041 3.5445 9 8 5.2527 1.3531 3.9148 10 7 6.5438 -0.3933 4.3675 11 6 6.7616 0.0498 5.6696 12 6 6.5252 1.3883 5.9910 13 6 6.7421 1.8276 7.2881 14 6 7.1840 0.9176 8.2318 15 6 7.4089 -0.4149 7.8448 16 6 7.8659 -1.3549 8.7963 17 1 7.9660 -1.0689 9.8329 18 6 8.1888 -2.6570 8.3949 19 7 8.5208 -3.5529 9.2875 20 14 8.1451 -3.1141 6.5842 21 1 8.5258 -4.5406 6.4245 22 1 6.7740 -2.9049 6.0538 23 1 9.1014 -2.2602 5.8350 24 7 7.1882 -0.8001 6.5838 25 6 3.1514 0.7974 2.1638 26 6 2.2175 1.7714 1.4425 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.3449 1.9994 -0.5138 31 1 3.8020 2.2592 -0.7216 32 1 3.2111 0.9315 -1.7489 33 1 5.2534 0.2590 -0.5140 34 1 3.8494 -0.7064 0.0001 35 1 4.9433 1.7510 1.4426 36 1 6.3618 -0.3170 1.6012 37 1 4.9514 -1.1935 2.2422 38 1 6.9738 -1.2039 4.0527 39 1 6.1764 2.0760 5.2348 40 1 6.5651 2.8584 7.5575 41 1 7.3577 1.2279 9.2516 42 1 8.6143 -3.2981 10.2187 43 1 2.7080 -0.1983 2.1637 44 1 3.2991 1.1298 3.1913 45 1 2.6612 2.7670 1.4425 46 1 1.2567 1.8015 1.9564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:21 Heat of formation + Delta-G solvation = -74.868753 kcal Electronic energy + Delta-G solvation = -26801.464128 eV Core-core repulsion = 23075.871944 eV Total energy + Delta-G solvation = -3725.592184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41251 -39.41640 -38.16313 -36.37289 -34.52877 -33.50345 -32.16553 -31.10381 -30.85853 -29.62016 -27.35925 -26.46094 -25.27139 -22.89543 -22.65919 -21.77412 -21.12547 -19.78633 -19.69640 -18.33708 -17.26690 -16.58089 -16.47618 -16.05592 -15.56122 -15.27868 -15.04966 -14.58710 -14.43090 -14.15834 -13.89947 -13.61452 -13.30031 -13.15278 -12.87067 -12.66073 -12.51246 -12.27654 -12.21095 -12.01697 -11.87000 -11.57114 -11.41351 -11.20214 -11.13256 -10.83158 -10.60635 -10.42676 -10.32714 -10.19002 -9.95525 -9.67169 -9.60348 -9.19581 -8.96201 -8.54155 -7.73863 -7.46470 -7.21386 -4.77499 2.25088 2.65136 3.06998 3.34360 3.53243 3.58270 3.64455 3.97330 4.39471 4.51661 4.54716 4.64000 4.68811 4.83334 4.93938 4.98746 5.07155 5.14020 5.24265 5.34666 5.40891 5.43236 5.45104 5.50911 5.52268 5.60960 5.70144 5.83859 5.88099 5.89046 6.01309 6.10176 6.11809 6.18114 6.43444 6.48290 6.49900 6.53273 6.63162 7.01209 7.15456 7.21255 7.43950 7.58095 7.65305 7.78706 8.12610 8.30716 8.49823 8.66129 9.41555 10.00007 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020697 B = 0.002988 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.551960 B = 9369.043530 C = 9895.171232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.087 3.913 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.068 4.068 7 C -0.136 4.136 8 C 0.515 3.485 9 O -0.512 6.512 10 N -0.656 5.656 11 C 0.385 3.615 12 C -0.314 4.314 13 C -0.037 4.037 14 C -0.278 4.278 15 C 0.273 3.727 16 C -0.477 4.477 17 H 0.083 0.917 18 C 0.043 3.957 19 N -0.806 5.806 20 Si 1.154 2.846 21 H -0.333 1.333 22 H -0.279 1.279 23 H -0.295 1.295 24 N -0.599 5.599 25 C -0.116 4.116 26 C -0.137 4.137 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.406 0.594 39 H 0.146 0.854 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.283 0.717 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.627 6.682 -19.884 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.030 3.970 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.087 4.087 7 C -0.176 4.176 8 C 0.302 3.698 9 O -0.387 6.387 10 N -0.301 5.301 11 C 0.154 3.846 12 C -0.338 4.338 13 C -0.061 4.061 14 C -0.300 4.300 15 C 0.148 3.852 16 C -0.509 4.509 17 H 0.101 0.899 18 C -0.178 4.178 19 N -0.428 5.428 20 Si 0.990 3.010 21 H -0.266 1.266 22 H -0.207 1.207 23 H -0.223 1.223 24 N -0.325 5.325 25 C -0.153 4.153 26 C -0.175 4.175 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.241 0.759 39 H 0.163 0.837 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.544 5.163 -20.742 23.834 hybrid contribution -0.324 1.958 1.620 2.562 sum -10.867 7.122 -19.122 23.119 Atomic orbital electron populations 1.22756 0.81658 1.02543 0.99655 1.87928 1.19020 1.27794 1.95023 1.22166 0.94623 0.84424 0.95821 1.21600 0.94103 1.00424 0.98927 1.21505 0.98844 0.99863 0.94622 1.20892 0.95313 0.98757 0.93734 1.21772 1.01875 1.01378 0.92589 1.20734 0.77633 0.84484 0.86932 1.90543 1.50301 1.22311 1.75565 1.43379 1.47000 1.28544 1.11172 1.18175 0.93612 0.89395 0.83397 1.21757 1.18145 0.95136 0.98788 1.20961 0.94286 0.97750 0.93087 1.21603 1.14152 0.94870 0.99399 1.18275 0.88199 0.91325 0.87354 1.20722 1.37737 0.96706 0.95733 0.89910 1.27787 0.88972 0.91846 1.09227 1.70647 1.31187 1.36182 1.04809 0.81853 0.78116 0.70600 0.70446 1.26632 1.20710 1.22316 1.66008 1.28617 1.34818 1.03037 1.21608 0.93695 0.99590 1.00391 1.21979 1.00136 0.99844 0.95546 0.94175 0.94421 0.89841 0.92669 0.90752 0.91540 0.92037 0.90954 0.90448 0.88674 0.88517 0.75886 0.83668 0.87684 0.87763 0.90604 0.91894 0.89903 0.91091 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.33 16 2 O -0.38 -3.84 9.00 -35.23 -0.32 -4.15 16 3 C 0.09 0.78 2.92 -26.73 -0.08 0.70 16 4 C -0.11 -0.93 5.66 -26.73 -0.15 -1.08 16 5 C -0.11 -0.99 5.06 -26.73 -0.14 -1.12 16 6 C -0.07 -0.73 1.84 -90.62 -0.17 -0.90 16 7 C -0.14 -1.52 5.17 -27.88 -0.14 -1.66 16 8 C 0.51 8.27 7.44 -10.98 -0.08 8.19 16 9 O -0.51 -9.50 10.63 5.56 0.06 -9.44 16 10 N -0.66 -12.10 5.41 -11.40 -0.06 -12.16 16 11 C 0.38 8.86 7.51 -154.98 -1.16 7.70 16 12 C -0.31 -7.09 8.90 -38.90 -0.35 -7.43 16 13 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 14 C -0.28 -6.72 9.83 -38.66 -0.38 -7.10 16 15 C 0.27 7.25 6.40 -85.00 -0.54 6.71 16 16 C -0.48 -13.14 9.57 -37.73 -0.36 -13.50 16 17 H 0.08 2.27 8.05 -52.49 -0.42 1.85 16 18 C 0.04 1.17 5.52 -17.34 -0.10 1.07 16 19 N -0.81 -22.11 13.65 55.55 0.76 -21.35 16 20 Si 1.15 27.93 25.62 -169.99 -4.35 23.57 16 21 H -0.33 -7.96 7.11 56.52 0.40 -7.56 16 22 H -0.28 -6.65 6.60 56.52 0.37 -6.28 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 N -0.60 -15.31 4.54 -10.26 -0.05 -15.36 16 25 C -0.12 -1.39 4.80 -26.73 -0.13 -1.52 16 26 C -0.14 -1.39 5.63 -26.73 -0.15 -1.54 16 27 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 28 H 0.04 0.24 8.09 -51.93 -0.42 -0.18 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.42 7.79 -51.93 -0.40 0.02 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.70 7.68 -51.93 -0.40 0.30 16 35 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.41 6.56 8.82 -40.82 -0.36 6.20 16 39 H 0.15 3.18 5.17 -52.92 -0.27 2.91 16 40 H 0.11 1.98 8.06 -52.48 -0.42 1.56 16 41 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 42 H 0.28 7.42 8.72 -40.82 -0.36 7.06 16 43 H 0.06 0.79 7.68 -51.93 -0.40 0.39 16 44 H 0.08 1.23 5.95 -51.93 -0.31 0.92 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -31.15 361.63 -8.95 -40.10 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.20 Total: 4.71 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -3.23 Total: -11.37 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.65 Total: -48.86 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.26 Total: -13.59 kcal Atomic # 14 Polarization: 27.93 SS G_CDS: -4.35 Total: 23.57 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.15 -8.95 -40.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.768 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds