Wall clock time and date at job start Tue Mar 31 2020 12:39:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.42902 * 113.99446 * 2 1
4 4 H 1.09000 * 109.47499 * 29.99801 * 3 2 1
5 5 C 1.53001 * 109.47075 * 269.99917 * 3 2 1
6 6 C 1.53002 * 109.47147 * 180.02562 * 5 3 2
7 7 C 1.53001 * 109.46907 * 59.99753 * 6 5 3
8 8 C 1.52992 * 109.47579 * 300.00182 * 7 6 5
9 9 H 1.09007 * 109.47053 * 300.00103 * 8 7 6
10 10 C 1.53001 * 109.47579 * 179.97438 * 8 7 6
11 11 C 1.50706 * 109.47018 * 64.99980 * 10 8 7
12 12 O 1.21270 * 119.99839 * 359.97438 * 11 10 8
13 13 N 1.34774 * 119.99783 * 180.02562 * 11 10 8
14 14 C 1.39269 * 119.99582 * 185.59963 * 13 11 10
15 15 C 1.39668 * 119.57716 * 18.87550 * 14 13 11
16 16 C 1.38656 * 119.49980 * 180.02562 * 15 14 13
17 17 C 1.38354 * 118.66465 * 359.74312 * 16 15 14
18 18 C 1.40573 * 119.12964 * 0.49679 * 17 16 15
19 19 C 1.41342 * 119.78667 * 179.76995 * 18 17 16
20 20 H 1.07998 * 119.99765 * 6.83255 * 19 18 17
21 21 C 1.40030 * 119.99799 * 186.83687 * 19 18 17
22 22 N 1.30741 * 119.99559 * 182.46756 * 21 19 18
23 23 Si 1.86802 * 119.99986 * 2.73513 * 21 19 18
24 24 H 1.48503 * 109.46757 * 179.72936 * 23 21 19
25 25 H 1.48494 * 109.47552 * 299.72874 * 23 21 19
26 26 H 1.48498 * 109.46924 * 59.73004 * 23 21 19
27 27 N 1.31907 * 119.57198 * 198.89477 * 14 13 11
28 28 C 1.53002 * 109.46895 * 150.00162 * 3 2 1
29 29 H 1.08998 * 109.46523 * 180.02562 * 1 2 3
30 30 H 1.08998 * 109.47175 * 299.99767 * 1 2 3
31 31 H 1.08994 * 109.47398 * 60.00255 * 1 2 3
32 32 H 1.09000 * 109.46862 * 300.00274 * 5 3 2
33 33 H 1.08992 * 109.47320 * 60.00262 * 5 3 2
34 34 H 1.08998 * 109.46767 * 179.97438 * 6 5 3
35 35 H 1.08991 * 109.47207 * 300.00423 * 6 5 3
36 36 H 1.09003 * 109.46968 * 179.97438 * 7 6 5
37 37 H 1.09007 * 109.47012 * 60.00311 * 7 6 5
38 38 H 1.08995 * 109.46909 * 305.00000 * 10 8 7
39 39 H 1.09004 * 109.47295 * 184.99817 * 10 8 7
40 40 H 0.96993 * 120.00245 * 5.59935 * 13 11 10
41 41 H 1.08003 * 120.25377 * 359.97438 * 15 14 13
42 42 H 1.07996 * 120.66606 * 180.02562 * 16 15 14
43 43 H 1.08003 * 120.43342 * 180.24729 * 17 16 15
44 44 H 0.96994 * 120.00548 * 355.12943 * 22 21 19
45 45 H 1.08993 * 109.47419 * 59.99939 * 28 3 2
46 46 H 1.09001 * 109.46978 * 299.99784 * 28 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 1 1.3449 1.9994 0.5138
5 6 2.2176 1.7714 -1.4425
6 6 2.8403 3.1690 -1.4425
7 6 4.1890 3.1263 -0.7214
8 6 3.9817 2.6604 0.7210
9 1 3.3167 3.3545 1.2350
10 6 5.3305 2.6170 1.4420
11 6 5.8873 4.0133 1.5502
12 8 5.2667 4.9505 1.0951
13 7 7.0755 4.2201 2.1518
14 6 7.5358 5.5186 2.3561
15 6 6.6343 6.5845 2.3120
16 6 7.0944 7.8766 2.5150
17 6 8.4419 8.0702 2.7622
18 6 9.2995 6.9567 2.7890
19 6 10.6793 7.1389 3.0354
20 1 11.0545 8.1134 3.3110
21 6 11.5597 6.0559 2.9220
22 7 12.8282 6.2133 3.1967
23 14 10.9232 4.3884 2.3710
24 1 12.0477 3.4194 2.3263
25 1 9.8951 3.9095 3.3296
26 1 10.3208 4.5105 1.0192
27 7 8.8176 5.7259 2.5883
28 6 3.3588 1.2634 0.7212
29 1 -0.3632 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8899
32 1 2.8828 1.0775 -1.9563
33 1 1.2568 1.8015 -1.9563
34 1 2.9885 3.5007 -2.4702
35 1 2.1755 3.8630 -0.9286
36 1 4.6329 4.1218 -0.7218
37 1 4.8541 2.4321 -1.2354
38 1 6.0235 1.9921 0.8788
39 1 5.1956 2.2013 2.4406
40 1 7.6099 3.4647 2.4426
41 1 5.5869 6.4038 2.1203
42 1 6.4139 8.7147 2.4854
43 1 8.8304 9.0641 2.9283
44 1 13.1726 7.0945 3.4104
45 1 4.0241 0.5696 0.2074
46 1 3.2111 0.9315 1.7489
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000882474022.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:39:44
Heat of formation + Delta-G solvation = -78.712988 kcal
Electronic energy + Delta-G solvation = -26571.828460 eV
Core-core repulsion = 22846.069578 eV
Total energy + Delta-G solvation = -3725.758882 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.45804 -39.38486 -38.20850 -36.70258 -34.57384 -33.53399 -32.64538 -31.13406
-30.37256 -29.66289 -27.31177 -26.72168 -25.32260 -22.83629 -22.60890 -21.81439
-21.21145 -20.03254 -19.76348 -18.36222 -17.35001 -16.80255 -16.37193 -15.90357
-15.62815 -15.35592 -15.09483 -14.86377 -14.52893 -14.09890 -13.96565 -13.69075
-13.47515 -13.15308 -13.03599 -12.84039 -12.42786 -12.33171 -12.16112 -12.03219
-11.89144 -11.74262 -11.26742 -11.19842 -11.13707 -10.80467 -10.61845 -10.59551
-10.55065 -10.37740 -10.00243 -9.70553 -9.65733 -9.24033 -9.07992 -8.57301
-7.82633 -7.40546 -7.26568 -4.79840 2.19368 2.62200 3.04707 3.19949
3.49501 3.54799 3.63729 3.95856 4.36247 4.40733 4.48476 4.62305
4.69411 4.83514 4.87514 4.93634 5.00794 5.05803 5.12693 5.24798
5.29632 5.34743 5.38433 5.44390 5.51539 5.53299 5.58636 5.77990
5.80553 5.83792 5.96520 6.01317 6.06427 6.10356 6.31989 6.35490
6.45050 6.50399 6.56423 6.93315 7.12015 7.17650 7.42071 7.55315
7.59259 7.75580 8.09659 8.26779 8.44969 8.63590 9.38586 9.98309
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.024473 B = 0.002790 C = 0.002621
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1143.824419 B =10031.972568 C =10682.293528
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.387 6.387
3 C 0.090 3.910
4 H 0.060 0.940
5 C -0.140 4.140
6 C -0.114 4.114
7 C -0.125 4.125
8 C -0.066 4.066
9 H 0.081 0.919
10 C -0.136 4.136
11 C 0.515 3.485
12 O -0.511 6.511
13 N -0.657 5.657
14 C 0.387 3.613
15 C -0.311 4.311
16 C -0.035 4.035
17 C -0.278 4.278
18 C 0.273 3.727
19 C -0.476 4.476
20 H 0.083 0.917
21 C 0.042 3.958
22 N -0.806 5.806
23 Si 1.158 2.842
24 H -0.332 1.332
25 H -0.284 1.284
26 H -0.294 1.294
27 N -0.599 5.599
28 C -0.111 4.111
29 H 0.083 0.917
30 H 0.040 0.960
31 H 0.040 0.960
32 H 0.070 0.930
33 H 0.059 0.941
34 H 0.064 0.936
35 H 0.062 0.938
36 H 0.088 0.912
37 H 0.058 0.942
38 H 0.097 0.903
39 H 0.098 0.902
40 H 0.408 0.592
41 H 0.139 0.861
42 H 0.105 0.895
43 H 0.105 0.895
44 H 0.283 0.717
45 H 0.073 0.927
46 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.709 -11.267 -5.566 23.374
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.306 6.306
3 C 0.033 3.967
4 H 0.078 0.922
5 C -0.178 4.178
6 C -0.151 4.151
7 C -0.162 4.162
8 C -0.085 4.085
9 H 0.100 0.900
10 C -0.176 4.176
11 C 0.302 3.698
12 O -0.386 6.386
13 N -0.302 5.302
14 C 0.157 3.843
15 C -0.336 4.336
16 C -0.059 4.059
17 C -0.300 4.300
18 C 0.149 3.851
19 C -0.508 4.508
20 H 0.101 0.899
21 C -0.179 4.179
22 N -0.428 5.428
23 Si 0.994 3.006
24 H -0.266 1.266
25 H -0.212 1.212
26 H -0.222 1.222
27 N -0.325 5.325
28 C -0.149 4.149
29 H 0.102 0.898
30 H 0.059 0.941
31 H 0.058 0.942
32 H 0.088 0.912
33 H 0.078 0.922
34 H 0.083 0.917
35 H 0.081 0.919
36 H 0.107 0.893
37 H 0.077 0.923
38 H 0.115 0.885
39 H 0.116 0.884
40 H 0.243 0.757
41 H 0.157 0.843
42 H 0.124 0.876
43 H 0.123 0.877
44 H 0.094 0.906
45 H 0.091 0.909
46 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -18.970 -12.899 -6.068 23.729
hybrid contribution -0.763 2.430 0.472 2.590
sum -19.733 -10.469 -5.596 23.029
Atomic orbital electron populations
1.22763 0.81355 1.02535 0.99891 1.87902 1.19417 1.28214 1.95100
1.22140 0.94878 0.84057 0.95656 0.92163 1.22050 1.01127 0.97718
0.96885 1.21448 0.97100 0.95824 1.00774 1.21783 0.97048 1.03412
0.94001 1.20830 0.94872 0.96045 0.96764 0.90037 1.21744 0.98368
0.94118 1.03361 1.20655 0.80396 0.91681 0.77100 1.90590 1.58992
1.43700 1.45318 1.43401 1.20709 1.07664 1.58468 1.18132 0.89519
0.83587 0.93108 1.21515 1.00678 0.91761 1.19642 1.20934 0.94896
0.95820 0.94291 1.21603 0.94061 0.98676 1.15650 1.18277 0.93826
0.85396 0.87608 1.20727 0.90960 0.98779 1.40337 0.89875 1.27789
0.92934 1.07155 0.90006 1.70640 1.15007 1.27644 1.29483 0.81781
0.70691 0.70589 0.77547 1.26618 1.21219 1.22247 1.65959 1.12184
1.24713 1.29645 1.21633 0.95217 0.97208 1.00813 0.89809 0.94103
0.94179 0.91165 0.92249 0.91721 0.91885 0.89341 0.92302 0.88450
0.88379 0.75691 0.84323 0.87644 0.87702 0.90575 0.90862 0.91188
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.22 10.82 101.05 1.09 1.31 16
2 O -0.39 -3.81 10.35 -35.23 -0.36 -4.18 16
3 C 0.09 0.81 2.61 -26.73 -0.07 0.74 16
4 H 0.06 0.52 7.79 -51.93 -0.40 0.11 16
5 C -0.14 -1.22 5.54 -26.73 -0.15 -1.37 16
6 C -0.11 -1.07 5.92 -26.73 -0.16 -1.23 16
7 C -0.13 -1.36 4.94 -26.73 -0.13 -1.49 16
8 C -0.07 -0.66 1.84 -90.65 -0.17 -0.83 16
9 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16
10 C -0.14 -1.40 5.18 -27.88 -0.14 -1.55 16
11 C 0.51 7.94 7.39 -10.98 -0.08 7.86 16
12 O -0.51 -9.22 10.77 5.57 0.06 -9.16 16
13 N -0.66 -11.77 5.41 -11.40 -0.06 -11.83 16
14 C 0.39 8.76 7.51 -154.98 -1.16 7.60 16
15 C -0.31 -6.91 8.83 -38.89 -0.34 -7.25 16
16 C -0.04 -0.77 10.15 -39.38 -0.40 -1.17 16
17 C -0.28 -6.63 9.83 -38.66 -0.38 -7.01 16
18 C 0.27 7.18 6.39 -85.00 -0.54 6.64 16
19 C -0.48 -12.99 9.58 -37.73 -0.36 -13.35 16
20 H 0.08 2.26 8.05 -52.49 -0.42 1.84 16
21 C 0.04 1.15 5.52 -17.34 -0.10 1.05 16
22 N -0.81 -21.92 13.65 55.55 0.76 -21.16 16
23 Si 1.16 27.92 25.55 -169.99 -4.34 23.57 16
24 H -0.33 -7.93 7.11 56.52 0.40 -7.52 16
25 H -0.28 -6.54 6.67 56.52 0.38 -6.16 16
26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
27 N -0.60 -15.12 4.58 -10.25 -0.05 -15.16 16
28 C -0.11 -0.98 4.85 -26.75 -0.13 -1.11 16
29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16
30 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16
31 H 0.04 0.25 7.87 -51.93 -0.41 -0.16 16
32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
33 H 0.06 0.48 7.87 -51.93 -0.41 0.07 16
34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
36 H 0.09 1.21 5.95 -51.93 -0.31 0.90 16
37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
38 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16
39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16
40 H 0.41 6.39 8.83 -40.82 -0.36 6.03 16
41 H 0.14 2.97 5.34 -52.50 -0.28 2.69 16
42 H 0.11 1.96 8.06 -52.49 -0.42 1.53 16
43 H 0.10 2.34 8.06 -52.48 -0.42 1.91 16
44 H 0.28 7.37 8.72 -40.82 -0.36 7.01 16
45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
LS Contribution 363.94 15.07 5.48 5.48
Total: -1.00 -30.84 363.94 -8.99 -39.83
By element:
Atomic # 1 Polarization: 11.02 SS G_CDS: -7.25 Total: 3.77 kcal
Atomic # 6 Polarization: -7.94 SS G_CDS: -3.22 Total: -11.17 kcal
Atomic # 7 Polarization: -48.80 SS G_CDS: 0.65 Total: -48.16 kcal
Atomic # 8 Polarization: -13.03 SS G_CDS: -0.30 Total: -13.34 kcal
Atomic # 14 Polarization: 27.92 SS G_CDS: -4.34 Total: 23.57 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -30.84 -8.99 -39.83 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000882474022.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.884 kcal
(2) G-P(sol) polarization free energy of solvation -30.837 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.721 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds