Wall clock time and date at job start Tue Mar 31 2020 12:39:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.42902 * 113.99446 * 2 1
4 4 H 1.09000 * 109.47499 * 29.99801 * 3 2 1
5 5 C 1.53001 * 109.47075 * 269.99917 * 3 2 1
6 6 C 1.53002 * 109.47147 * 180.02562 * 5 3 2
7 7 C 1.53001 * 109.46907 * 59.99753 * 6 5 3
8 8 C 1.52992 * 109.47579 * 300.00182 * 7 6 5
9 9 H 1.09007 * 109.47053 * 300.00103 * 8 7 6
10 10 C 1.53001 * 109.47579 * 179.97438 * 8 7 6
11 11 C 1.50706 * 109.47018 * 64.99980 * 10 8 7
12 12 O 1.21270 * 119.99839 * 359.97438 * 11 10 8
13 13 N 1.34774 * 119.99783 * 180.02562 * 11 10 8
14 14 C 1.39269 * 119.99582 * 185.59963 * 13 11 10
15 15 C 1.39668 * 119.57716 * 18.87550 * 14 13 11
16 16 C 1.38656 * 119.49980 * 180.02562 * 15 14 13
17 17 C 1.38354 * 118.66465 * 359.74312 * 16 15 14
18 18 C 1.40573 * 119.12964 * 0.49679 * 17 16 15
19 19 C 1.41342 * 119.78667 * 179.76995 * 18 17 16
20 20 H 1.07998 * 119.99765 * 6.83255 * 19 18 17
21 21 C 1.40030 * 119.99799 * 186.83687 * 19 18 17
22 22 N 1.30741 * 119.99559 * 182.46756 * 21 19 18
23 23 Si 1.86802 * 119.99986 * 2.73513 * 21 19 18
24 24 H 1.48503 * 109.46757 * 179.72936 * 23 21 19
25 25 H 1.48494 * 109.47552 * 299.72874 * 23 21 19
26 26 H 1.48498 * 109.46924 * 59.73004 * 23 21 19
27 27 N 1.31907 * 119.57198 * 198.89477 * 14 13 11
28 28 C 1.53002 * 109.46895 * 150.00162 * 3 2 1
29 29 H 1.08998 * 109.46523 * 180.02562 * 1 2 3
30 30 H 1.08998 * 109.47175 * 299.99767 * 1 2 3
31 31 H 1.08994 * 109.47398 * 60.00255 * 1 2 3
32 32 H 1.09000 * 109.46862 * 300.00274 * 5 3 2
33 33 H 1.08992 * 109.47320 * 60.00262 * 5 3 2
34 34 H 1.08998 * 109.46767 * 179.97438 * 6 5 3
35 35 H 1.08991 * 109.47207 * 300.00423 * 6 5 3
36 36 H 1.09003 * 109.46968 * 179.97438 * 7 6 5
37 37 H 1.09007 * 109.47012 * 60.00311 * 7 6 5
38 38 H 1.08995 * 109.46909 * 305.00000 * 10 8 7
39 39 H 1.09004 * 109.47295 * 184.99817 * 10 8 7
40 40 H 0.96993 * 120.00245 * 5.59935 * 13 11 10
41 41 H 1.08003 * 120.25377 * 359.97438 * 15 14 13
42 42 H 1.07996 * 120.66606 * 180.02562 * 16 15 14
43 43 H 1.08003 * 120.43342 * 180.24729 * 17 16 15
44 44 H 0.96994 * 120.00548 * 355.12943 * 22 21 19
45 45 H 1.08993 * 109.47419 * 59.99939 * 28 3 2
46 46 H 1.09001 * 109.46978 * 299.99784 * 28 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 1 1.3449 1.9994 0.5138
5 6 2.2176 1.7714 -1.4425
6 6 2.8403 3.1690 -1.4425
7 6 4.1890 3.1263 -0.7214
8 6 3.9817 2.6604 0.7210
9 1 3.3167 3.3545 1.2350
10 6 5.3305 2.6170 1.4420
11 6 5.8873 4.0133 1.5502
12 8 5.2667 4.9505 1.0951
13 7 7.0755 4.2201 2.1518
14 6 7.5358 5.5186 2.3561
15 6 6.6343 6.5845 2.3120
16 6 7.0944 7.8766 2.5150
17 6 8.4419 8.0702 2.7622
18 6 9.2995 6.9567 2.7890
19 6 10.6793 7.1389 3.0354
20 1 11.0545 8.1134 3.3110
21 6 11.5597 6.0559 2.9220
22 7 12.8282 6.2133 3.1967
23 14 10.9232 4.3884 2.3710
24 1 12.0477 3.4194 2.3263
25 1 9.8951 3.9095 3.3296
26 1 10.3208 4.5105 1.0192
27 7 8.8176 5.7259 2.5883
28 6 3.3588 1.2634 0.7212
29 1 -0.3632 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8899
32 1 2.8828 1.0775 -1.9563
33 1 1.2568 1.8015 -1.9563
34 1 2.9885 3.5007 -2.4702
35 1 2.1755 3.8630 -0.9286
36 1 4.6329 4.1218 -0.7218
37 1 4.8541 2.4321 -1.2354
38 1 6.0235 1.9921 0.8788
39 1 5.1956 2.2013 2.4406
40 1 7.6099 3.4647 2.4426
41 1 5.5869 6.4038 2.1203
42 1 6.4139 8.7147 2.4854
43 1 8.8304 9.0641 2.9283
44 1 13.1726 7.0945 3.4104
45 1 4.0241 0.5696 0.2074
46 1 3.2111 0.9315 1.7489
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000882474022.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:39:44
Heat of formation + Delta-G solvation = -96.359486 kcal
Electronic energy + Delta-G solvation = -26572.593670 eV
Core-core repulsion = 22846.069578 eV
Total energy + Delta-G solvation = -3726.524092 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.78471 -40.43068 -39.64105 -37.51987 -36.19958 -35.34828 -33.52108 -32.99059
-31.45352 -30.98928 -28.36177 -27.30333 -27.15087 -24.21596 -23.59537 -23.33436
-22.32002 -21.25266 -20.77398 -20.25714 -18.81171 -17.97347 -17.32797 -17.04990
-16.80471 -16.50282 -16.24160 -16.01273 -15.83317 -15.58060 -15.17592 -14.91553
-14.71817 -14.43309 -14.26998 -14.24869 -13.83106 -13.73188 -13.33443 -13.00806
-12.90970 -12.73845 -12.63923 -12.43944 -12.24167 -11.92192 -11.91136 -11.77240
-11.61004 -11.44793 -11.34230 -11.28079 -11.10862 -10.54289 -10.38713 -10.35085
-9.75384 -9.27672 -9.18539 -6.82915 0.52385 0.73087 1.55645 1.60955
1.73725 1.91443 2.08729 2.44483 2.67698 2.82545 3.53843 3.60273
3.73137 3.76638 4.07527 4.11228 4.12406 4.22976 4.31629 4.42059
4.51233 4.52331 4.54005 4.56056 4.65985 4.68117 4.69266 4.70350
4.75736 4.79974 4.86445 4.89928 5.07121 5.10098 5.23886 5.27913
5.33643 5.36835 5.39464 5.43065 5.51534 5.55638 5.72571 5.81943
5.94379 6.31851 6.32870 6.42953 6.65083 7.12912 7.50402 7.94409
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.024473 B = 0.002790 C = 0.002621
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1143.824419 B =10031.972568 C =10682.293528
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.406 6.406
3 C 0.088 3.912
4 H 0.063 0.937
5 C -0.134 4.134
6 C -0.111 4.111
7 C -0.125 4.125
8 C -0.060 4.060
9 H 0.071 0.929
10 C -0.126 4.126
11 C 0.514 3.486
12 O -0.537 6.537
13 N -0.657 5.657
14 C 0.378 3.622
15 C -0.307 4.307
16 C -0.028 4.028
17 C -0.296 4.296
18 C 0.257 3.743
19 C -0.509 4.509
20 H 0.067 0.933
21 C 0.012 3.988
22 N -0.829 5.829
23 Si 1.190 2.810
24 H -0.329 1.329
25 H -0.269 1.269
26 H -0.302 1.302
27 N -0.613 5.613
28 C -0.105 4.105
29 H 0.095 0.905
30 H 0.047 0.953
31 H 0.046 0.954
32 H 0.067 0.933
33 H 0.066 0.934
34 H 0.065 0.935
35 H 0.059 0.941
36 H 0.058 0.942
37 H 0.064 0.936
38 H 0.121 0.879
39 H 0.128 0.872
40 H 0.419 0.581
41 H 0.152 0.848
42 H 0.142 0.858
43 H 0.113 0.887
44 H 0.280 0.720
45 H 0.076 0.924
46 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.431 -13.241 -5.882 26.703
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.325 6.325
3 C 0.031 3.969
4 H 0.081 0.919
5 C -0.172 4.172
6 C -0.148 4.148
7 C -0.162 4.162
8 C -0.079 4.079
9 H 0.089 0.911
10 C -0.166 4.166
11 C 0.304 3.696
12 O -0.413 6.413
13 N -0.304 5.304
14 C 0.146 3.854
15 C -0.331 4.331
16 C -0.053 4.053
17 C -0.318 4.318
18 C 0.132 3.868
19 C -0.541 4.541
20 H 0.085 0.915
21 C -0.204 4.204
22 N -0.453 5.453
23 Si 1.023 2.977
24 H -0.263 1.263
25 H -0.196 1.196
26 H -0.231 1.231
27 N -0.339 5.339
28 C -0.142 4.142
29 H 0.114 0.886
30 H 0.066 0.934
31 H 0.064 0.936
32 H 0.085 0.915
33 H 0.085 0.915
34 H 0.084 0.916
35 H 0.078 0.922
36 H 0.076 0.924
37 H 0.083 0.917
38 H 0.139 0.861
39 H 0.146 0.854
40 H 0.256 0.744
41 H 0.169 0.831
42 H 0.160 0.840
43 H 0.131 0.869
44 H 0.091 0.909
45 H 0.095 0.905
46 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -21.720 -14.895 -6.378 27.098
hybrid contribution -0.192 3.085 0.496 3.130
sum -21.912 -11.811 -5.881 25.578
Atomic orbital electron populations
1.22936 0.80049 1.03607 1.00549 1.87870 1.20941 1.28492 1.95205
1.22158 0.95075 0.84038 0.95656 0.91897 1.21986 1.01310 0.96879
0.97033 1.21405 0.96398 0.96387 1.00639 1.21738 0.97677 1.01758
0.95062 1.20764 0.94603 0.96688 0.95874 0.91057 1.21841 0.98479
0.90710 1.05542 1.21639 0.79060 0.93497 0.75397 1.90570 1.59359
1.45262 1.46107 1.43567 1.21726 1.06188 1.58910 1.18536 0.88798
0.85928 0.92110 1.21893 1.01291 0.91975 1.17935 1.21347 0.94551
0.97054 0.92299 1.21755 0.94927 0.98536 1.16584 1.18453 0.93857
0.86736 0.87738 1.20711 0.92055 0.98425 1.42948 0.91507 1.28616
0.92929 1.09130 0.89728 1.70664 1.15357 1.27567 1.31672 0.81381
0.70644 0.68630 0.77055 1.26300 1.19568 1.23055 1.65958 1.13557
1.24372 1.29986 1.21556 0.95098 0.96082 1.01489 0.88634 0.93414
0.93555 0.91457 0.91547 0.91598 0.92214 0.92360 0.91737 0.86123
0.85425 0.74369 0.83099 0.83977 0.86931 0.90908 0.90509 0.90214
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.28 10.82 113.37 1.23 1.51 16
2 O -0.41 -6.97 10.35 -148.98 -1.54 -8.51 16
3 C 0.09 1.37 2.61 30.60 0.08 1.45 16
4 H 0.06 0.93 7.79 -2.39 -0.02 0.91 16
5 C -0.13 -2.05 5.54 30.60 0.17 -1.88 16
6 C -0.11 -1.91 5.92 30.60 0.18 -1.73 16
7 C -0.12 -2.49 4.94 30.59 0.15 -2.34 16
8 C -0.06 -1.04 1.84 -10.81 -0.02 -1.06 16
9 H 0.07 1.41 7.96 -2.38 -0.02 1.39 16
10 C -0.13 -2.15 5.18 29.85 0.15 -2.00 16
11 C 0.51 14.51 7.39 87.66 0.65 15.16 16
12 O -0.54 -18.33 10.77 -3.00 -0.03 -18.36 16
13 N -0.66 -21.93 5.41 -308.37 -1.67 -23.60 16
14 C 0.38 16.45 7.51 133.25 1.00 17.45 16
15 C -0.31 -12.96 8.83 22.72 0.20 -12.76 16
16 C -0.03 -1.18 10.15 22.40 0.23 -0.95 16
17 C -0.30 -14.00 9.83 22.87 0.22 -13.77 16
18 C 0.26 13.62 6.39 40.19 0.26 13.87 16
19 C -0.51 -28.62 9.58 23.47 0.22 -28.39 16
20 H 0.07 3.83 8.05 -2.91 -0.02 3.80 16
21 C 0.01 0.68 5.52 85.29 0.47 1.15 16
22 N -0.83 -46.37 13.65 21.84 0.30 -46.07 16
23 Si 1.19 56.56 25.55 68.60 1.75 58.31 16
24 H -0.33 -15.29 7.11 99.48 0.71 -14.59 16
25 H -0.27 -11.89 6.67 99.48 0.66 -11.22 16
26 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16
27 N -0.61 -30.42 4.58 -186.35 -0.85 -31.27 16
28 C -0.10 -1.52 4.85 30.58 0.15 -1.37 16
29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16
30 H 0.05 0.48 8.08 -2.39 -0.02 0.46 16
31 H 0.05 0.46 7.87 -2.39 -0.02 0.45 16
32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16
33 H 0.07 0.92 7.87 -2.39 -0.02 0.90 16
34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
36 H 0.06 1.54 5.95 -2.39 -0.01 1.52 16
37 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16
38 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16
39 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16
40 H 0.42 11.94 8.83 -92.71 -0.82 11.12 16
41 H 0.15 6.07 5.34 -3.13 -0.02 6.06 16
42 H 0.14 4.80 8.06 -2.91 -0.02 4.78 16
43 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16
44 H 0.28 15.20 8.72 -92.71 -0.81 14.39 16
45 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16
46 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16
Total: -1.00 -67.07 363.94 3.38 -63.69
By element:
Atomic # 1 Polarization: 21.40 SS G_CDS: 0.08 Total: 21.48 kcal
Atomic # 6 Polarization: -21.01 SS G_CDS: 5.34 Total: -15.67 kcal
Atomic # 7 Polarization: -98.72 SS G_CDS: -2.22 Total: -100.95 kcal
Atomic # 8 Polarization: -25.29 SS G_CDS: -1.57 Total: -26.87 kcal
Atomic # 14 Polarization: 56.56 SS G_CDS: 1.75 Total: 58.31 kcal
Total: -67.07 3.38 -63.69 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000882474022.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.666 kcal
(2) G-P(sol) polarization free energy of solvation -67.072 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.738 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.694 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.359 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds