Wall clock time and date at job start Tue Mar 31 2020 12:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99746 * 2 1 4 4 H 1.08999 * 109.46954 * 30.00430 * 3 2 1 5 5 C 1.52995 * 109.47398 * 270.00483 * 3 2 1 6 6 C 1.53002 * 109.47033 * 300.00021 * 5 3 2 7 7 C 1.52996 * 109.46924 * 299.99735 * 6 5 3 8 8 C 1.52995 * 109.47049 * 60.00275 * 7 6 5 9 9 H 1.08999 * 109.47435 * 60.00061 * 8 7 6 10 10 C 1.53006 * 109.47361 * 179.97438 * 8 7 6 11 11 C 1.50696 * 109.46828 * 295.00116 * 10 8 7 12 12 O 1.21269 * 120.00335 * 359.72160 * 11 10 8 13 13 N 1.34783 * 119.99943 * 180.02562 * 11 10 8 14 14 C 1.39267 * 120.00018 * 174.58284 * 13 11 10 15 15 C 1.39672 * 119.57131 * 185.38762 * 14 13 11 16 16 C 1.38652 * 119.49468 * 179.77045 * 15 14 13 17 17 C 1.38344 * 118.66877 * 0.48965 * 16 15 14 18 18 C 1.40586 * 119.12929 * 359.75832 * 17 16 15 19 19 C 1.41340 * 119.78469 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99970 * 359.97165 * 19 18 17 21 21 C 1.40023 * 119.99644 * 179.97438 * 19 18 17 22 22 N 1.30748 * 119.99910 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00068 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47237 * 90.00012 * 23 21 19 25 25 H 1.48502 * 109.47077 * 210.00037 * 23 21 19 26 26 H 1.48497 * 109.46983 * 329.99982 * 23 21 19 27 27 N 1.31901 * 119.57533 * 5.65935 * 14 13 11 28 28 C 1.52996 * 109.46974 * 150.00079 * 3 2 1 29 29 H 1.09002 * 109.46545 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47104 * 299.99565 * 1 2 3 31 31 H 1.08996 * 109.47359 * 59.99616 * 1 2 3 32 32 H 1.09004 * 109.47439 * 60.00059 * 5 3 2 33 33 H 1.08999 * 109.47435 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.47023 * 59.99964 * 6 5 3 35 35 H 1.08999 * 109.47123 * 179.97438 * 6 5 3 36 36 H 1.09001 * 109.47457 * 299.99963 * 7 6 5 37 37 H 1.08999 * 109.47024 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.47110 * 175.00082 * 10 8 7 39 39 H 1.08995 * 109.46961 * 54.99884 * 10 8 7 40 40 H 0.96998 * 119.99587 * 354.58139 * 13 11 10 41 41 H 1.07998 * 120.25464 * 0.02562 * 15 14 13 42 42 H 1.08003 * 120.66609 * 180.22360 * 16 15 14 43 43 H 1.07997 * 120.43808 * 179.76762 * 17 16 15 44 44 H 0.97002 * 119.99926 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.47478 * 300.00244 * 28 3 2 46 46 H 1.09001 * 109.47150 * 180.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7715 -1.4424 6 6 3.1513 0.7976 -2.1638 7 6 4.5000 0.7555 -1.4426 8 6 4.2927 0.2895 -0.0002 9 1 3.8495 -0.7063 -0.0002 10 6 5.6415 0.2467 0.7209 11 6 6.5178 -0.8016 0.0853 12 8 6.1026 -1.4541 -0.8488 13 7 7.7610 -1.0183 0.5588 14 6 8.5290 -2.0613 0.0472 15 6 9.7697 -2.3493 0.6205 16 6 10.5309 -3.3911 0.1130 17 6 10.0381 -4.1116 -0.9603 18 6 8.7844 -3.7694 -1.4966 19 6 8.2674 -4.4966 -2.5927 20 1 8.8353 -5.3119 -3.0159 21 6 7.0190 -4.1598 -3.1300 22 7 6.3318 -3.1724 -2.6179 23 14 6.3359 -5.1204 -4.5792 24 1 5.5344 -6.2663 -4.0799 25 1 5.4729 -4.2325 -5.3990 26 1 7.4576 -5.6258 -5.4108 27 7 8.0779 -2.7610 -0.9759 28 6 3.3589 1.2633 0.7212 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.2567 1.8016 -1.9563 33 1 2.6604 2.7675 -1.4424 34 1 2.7080 -0.1982 -2.1638 35 1 3.2987 1.1293 -3.1916 36 1 4.9433 1.7513 -1.4426 37 1 5.1654 0.0620 -1.9568 38 1 5.4844 0.0009 1.7711 39 1 6.1256 1.2202 0.6440 40 1 8.1206 -0.4478 1.2560 41 1 10.1315 -1.7676 1.4554 42 1 11.4913 -3.6325 0.5441 43 1 10.6089 -4.9264 -1.3807 44 1 5.4668 -2.9393 -2.9898 45 1 3.2112 0.9314 1.7489 46 1 3.8020 2.2592 0.7216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:50 Heat of formation + Delta-G solvation = -63.211537 kcal Electronic energy + Delta-G solvation = -27527.003563 eV Core-core repulsion = 23801.916874 eV Total energy + Delta-G solvation = -3725.086689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11812 -40.23997 -39.14914 -37.05366 -35.81597 -34.76796 -33.27428 -32.18841 -31.15157 -30.90339 -28.22751 -27.36127 -27.16527 -23.99015 -23.41987 -23.15121 -22.19832 -20.71398 -20.43754 -19.49976 -17.91731 -17.56359 -17.00537 -16.60628 -16.42936 -16.34552 -16.24607 -15.97434 -15.68359 -15.39130 -14.81856 -14.71415 -14.45239 -14.17185 -13.87337 -13.72652 -13.39844 -13.23454 -12.93462 -12.90630 -12.72846 -12.63037 -12.55145 -12.43960 -12.30235 -12.10296 -11.82841 -11.76719 -11.46955 -11.37338 -11.13301 -11.00810 -10.79771 -10.33966 -10.29700 -9.86903 -9.00906 -8.75565 -8.02874 -6.40337 0.95668 1.27658 1.37573 1.49427 1.52175 2.25629 2.27640 2.47070 2.99834 3.01925 3.78857 3.82006 3.92878 4.06136 4.09468 4.26472 4.34174 4.38856 4.44900 4.51141 4.58872 4.59977 4.67253 4.73988 4.78068 4.81759 4.84985 4.90757 4.92328 4.97000 4.97677 5.01190 5.10560 5.11374 5.28705 5.36230 5.39502 5.44471 5.62949 5.70919 5.74744 5.92109 5.94687 6.17794 6.41590 6.44175 6.80013 6.91988 7.11687 7.85431 8.39042 8.58086 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012734 B = 0.004324 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.388711 B = 6474.302213 C = 8142.415415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.085 3.915 4 H 0.084 0.916 5 C -0.133 4.133 6 C -0.108 4.108 7 C -0.113 4.113 8 C -0.057 4.057 9 H 0.042 0.958 10 C -0.120 4.120 11 C 0.452 3.548 12 O -0.452 6.452 13 N -0.660 5.660 14 C 0.350 3.650 15 C -0.349 4.349 16 C -0.036 4.036 17 C -0.334 4.334 18 C 0.237 3.763 19 C -0.467 4.467 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.683 5.683 23 Si 0.969 3.031 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.255 1.255 27 N -0.507 5.507 28 C -0.104 4.104 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.037 0.963 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.419 0.581 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.102 0.898 44 H 0.268 0.732 45 H 0.075 0.925 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.018 14.135 7.576 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C 0.028 3.972 4 H 0.101 0.899 5 C -0.170 4.170 6 C -0.146 4.146 7 C -0.151 4.151 8 C -0.076 4.076 9 H 0.061 0.939 10 C -0.160 4.160 11 C 0.237 3.763 12 O -0.318 6.318 13 N -0.310 5.310 14 C 0.111 3.889 15 C -0.374 4.374 16 C -0.060 4.060 17 C -0.357 4.357 18 C 0.112 3.888 19 C -0.498 4.498 20 H 0.101 0.899 21 C -0.214 4.214 22 N -0.301 5.301 23 Si 0.790 3.210 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.178 1.178 27 N -0.227 5.227 28 C -0.141 4.141 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.256 0.744 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.120 0.880 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.322 13.853 6.503 19.036 hybrid contribution 0.737 -0.680 -0.172 1.017 sum -10.585 13.173 6.330 18.046 Atomic orbital electron populations 1.22886 0.80548 1.02950 1.00661 1.88004 1.20531 1.29121 1.95115 1.22279 0.95100 0.84331 0.95515 0.89854 1.22007 0.99532 0.99432 0.96070 1.21302 0.95683 0.99172 0.98426 1.21578 0.97083 1.00500 0.95924 1.20642 0.93401 0.99149 0.94398 0.93933 1.21754 0.94911 0.98231 1.01110 1.21943 0.82449 0.86571 0.85338 1.91119 1.71240 1.44941 1.24479 1.43573 1.15537 1.31070 1.40826 1.19221 0.88921 0.89255 0.91486 1.20996 0.98303 1.08307 1.09809 1.21032 0.98162 0.93120 0.93696 1.21793 1.00610 1.07821 1.05462 1.18875 0.88764 0.89119 0.92085 1.19866 1.02996 1.14549 1.12403 0.89854 1.26979 0.97319 0.96471 1.00601 1.70521 1.08597 1.18890 1.32132 0.85409 0.78810 0.78587 0.78152 1.19227 1.19935 1.17842 1.68692 1.33726 1.09163 1.11070 1.21705 0.93136 1.00393 0.98851 0.90089 0.92561 0.93609 0.91711 0.89262 0.94416 0.92895 0.91437 0.93990 0.87379 0.86721 0.74356 0.85119 0.84687 0.87994 0.92109 0.90666 0.88062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.82 113.37 1.23 1.70 16 2 O -0.41 -10.48 9.00 -148.98 -1.34 -11.82 16 3 C 0.08 1.68 2.92 30.59 0.09 1.77 16 4 H 0.08 1.19 7.79 -2.39 -0.02 1.17 16 5 C -0.13 -2.68 5.63 30.59 0.17 -2.51 16 6 C -0.11 -3.09 5.78 30.59 0.18 -2.91 16 7 C -0.11 -3.52 4.94 30.59 0.15 -3.37 16 8 C -0.06 -1.62 1.69 -10.79 -0.02 -1.63 16 9 H 0.04 1.60 7.49 -2.39 -0.02 1.59 16 10 C -0.12 -3.15 5.18 29.85 0.15 -3.00 16 11 C 0.45 18.16 7.50 87.65 0.66 18.82 16 12 O -0.45 -23.31 9.75 -2.99 -0.03 -23.34 16 13 N -0.66 -25.72 5.38 -308.37 -1.66 -27.38 16 14 C 0.35 17.38 7.43 133.25 0.99 18.37 16 15 C -0.35 -15.33 9.95 22.72 0.23 -15.10 16 16 C -0.04 -1.62 10.15 22.39 0.23 -1.39 16 17 C -0.33 -17.49 9.83 22.87 0.22 -17.26 16 18 C 0.24 14.13 6.55 40.20 0.26 14.40 16 19 C -0.47 -27.50 9.14 23.47 0.21 -27.28 16 20 H 0.08 4.61 7.85 -2.91 -0.02 4.59 16 21 C 0.01 0.68 5.50 85.29 0.47 1.15 16 22 N -0.68 -40.39 9.00 21.84 0.20 -40.20 16 23 Si 0.97 42.33 29.56 68.60 2.03 44.36 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 27 N -0.51 -29.87 5.74 -186.35 -1.07 -30.94 16 28 C -0.10 -2.01 4.95 30.59 0.15 -1.86 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 0.78 8.09 -2.39 -0.02 0.76 16 31 H 0.05 0.73 7.87 -2.39 -0.02 0.72 16 32 H 0.06 1.20 7.87 -2.38 -0.02 1.19 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 1.29 7.68 -2.39 -0.02 1.27 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.04 1.75 5.96 -2.39 -0.01 1.74 16 38 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.42 11.80 8.70 -92.71 -0.81 10.99 16 41 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 42 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 43 H 0.10 5.00 8.06 -2.91 -0.02 4.97 16 44 H 0.27 15.15 8.29 -92.71 -0.77 14.38 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 46 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -78.50 364.59 3.67 -74.83 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.17 Total: 34.60 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 5.38 Total: -20.12 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -2.53 Total: -98.51 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.37 Total: -35.15 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -78.50 3.67 -74.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.617 kcal (2) G-P(sol) polarization free energy of solvation -78.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds