Wall clock time and date at job start Tue Mar 31 2020 12:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99634 * 2 1 4 4 C 1.53001 * 109.47172 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47309 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47145 * 54.99653 * 5 4 3 7 7 N 1.46902 * 109.47190 * 294.99674 * 5 4 3 8 8 C 1.50700 * 109.47251 * 175.00123 * 5 4 3 9 9 O 1.21276 * 120.00549 * 99.99313 * 8 5 4 10 10 N 1.34781 * 119.99519 * 279.99967 * 8 5 4 11 11 C 1.47236 * 121.32724 * 179.97438 * 10 8 5 12 12 C 1.52789 * 107.88322 * 116.13413 * 11 10 8 13 13 C 1.50562 * 110.87757 * 47.41477 * 12 11 10 14 14 C 1.41413 * 117.64277 * 159.95245 * 13 12 11 15 15 C 1.41396 * 119.96882 * 358.31446 * 14 13 12 16 16 H 1.08003 * 119.99619 * 26.15606 * 15 14 13 17 17 C 1.39941 * 120.00039 * 205.86998 * 15 14 13 18 18 N 1.30832 * 120.00116 * 17.20433 * 17 15 14 19 19 Si 1.86807 * 120.00180 * 197.19983 * 17 15 14 20 20 H 1.48498 * 109.46923 * 60.00499 * 19 17 15 21 21 H 1.48496 * 109.47115 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46968 * 300.00259 * 19 17 15 23 23 C 1.40413 * 120.06270 * 178.59785 * 14 13 12 24 24 C 1.37637 * 119.54207 * 359.89950 * 23 14 13 25 25 C 1.38335 * 119.99124 * 0.64543 * 24 23 14 26 26 C 1.37049 * 122.98983 * 339.27487 * 13 12 11 27 27 C 1.46663 * 121.33400 * 359.97438 * 10 8 5 28 28 H 1.08997 * 109.47062 * 60.00016 * 1 2 3 29 29 H 1.08997 * 109.46439 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46832 * 299.99975 * 1 2 3 31 31 H 1.08995 * 109.47256 * 60.00087 * 3 2 1 32 32 H 1.09003 * 109.46847 * 299.99550 * 3 2 1 33 33 H 1.09005 * 109.47132 * 59.99209 * 4 3 2 34 34 H 1.09006 * 109.46606 * 300.00132 * 4 3 2 35 35 H 1.00905 * 110.99942 * 300.00315 * 7 5 4 36 36 H 1.00904 * 111.00065 * 63.95051 * 7 5 4 37 37 H 1.08999 * 109.77812 * 235.72511 * 11 10 8 38 38 H 1.09001 * 109.78083 * 356.53590 * 11 10 8 39 39 H 1.09002 * 109.19047 * 287.05517 * 12 11 10 40 40 H 1.08995 * 109.19609 * 167.77410 * 12 11 10 41 41 H 0.96995 * 119.99798 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.23029 * 180.11777 * 23 14 13 43 43 H 1.08007 * 120.00854 * 180.38756 * 24 23 14 44 44 H 1.07997 * 119.48038 * 179.62511 * 25 24 23 45 45 H 1.08997 * 109.42807 * 104.37177 * 27 10 8 46 46 H 1.09007 * 109.38245 * 344.50329 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1849 -0.0006 5 6 4.1577 2.5825 -0.0013 6 1 3.7673 3.1544 0.8405 7 7 3.8216 3.2676 -1.2566 8 6 5.6551 2.4659 0.1219 9 8 6.3542 2.5636 -0.8643 10 7 6.2174 2.2528 1.3281 11 6 7.6768 2.1336 1.4821 12 6 8.1537 3.2976 2.3493 13 6 7.2889 3.4446 3.5729 14 6 7.8221 4.1580 4.6713 15 6 9.1378 4.6722 4.6080 16 1 9.5800 4.9077 3.6513 17 6 9.8646 4.8815 5.7854 18 7 9.4871 4.3064 6.8983 19 14 11.3740 5.9820 5.7682 20 1 10.9848 7.3493 5.3391 21 1 11.9608 6.0387 7.1311 22 1 12.3766 5.4323 4.8206 23 6 7.0485 4.3511 5.8271 24 6 5.7702 3.8435 5.8807 25 6 5.2610 3.1373 4.8057 26 6 6.0201 2.9333 3.6558 27 6 5.4000 2.1304 2.5397 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8567 0.6440 -0.8908 34 1 3.8574 0.6437 0.8892 35 1 4.1729 2.7566 -2.0526 36 1 2.8264 3.4156 -1.3325 37 1 7.9205 1.1884 1.9671 38 1 8.1560 2.1815 0.5043 39 1 8.1115 4.2185 1.7677 40 1 9.1833 3.1164 2.6577 41 1 9.9911 4.4512 7.7142 42 1 7.4523 4.8971 6.6668 43 1 5.1663 3.9930 6.7635 44 1 4.2592 2.7375 4.8590 45 1 5.3440 1.0827 2.8349 46 1 4.3962 2.5046 2.3382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884445703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:53 Heat of formation + Delta-G solvation = -65.839544 kcal Electronic energy + Delta-G solvation = -26978.697278 eV Core-core repulsion = 23253.496630 eV Total energy + Delta-G solvation = -3725.200648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18072 -38.46022 -37.99464 -35.69104 -35.36594 -33.69303 -32.02679 -30.46465 -30.12119 -28.99918 -27.14000 -25.93082 -25.18989 -24.65467 -22.93991 -21.82070 -20.62281 -19.86946 -18.36267 -17.38169 -17.13772 -16.64259 -16.32036 -15.93248 -15.38819 -15.30799 -15.03651 -14.86590 -14.50825 -14.19275 -13.92173 -13.54280 -13.41502 -13.21475 -13.09381 -12.58994 -12.43937 -12.23134 -12.03546 -11.80293 -11.59495 -11.51941 -11.45560 -11.31079 -11.16873 -11.03785 -10.84753 -10.53650 -10.20940 -10.01761 -9.80553 -9.52289 -9.32972 -9.18124 -8.85332 -8.26096 -7.36031 -7.31231 -6.80541 -4.41160 2.72209 2.77094 2.83594 3.04182 3.06973 3.14889 3.18245 3.52202 3.89547 4.44495 4.50824 4.54088 4.62563 4.85334 4.86143 4.98299 5.01478 5.13409 5.17844 5.34015 5.35696 5.50914 5.65431 5.66671 5.73158 5.81902 5.89346 5.91405 5.97990 6.27698 6.34821 6.44945 6.69911 6.79056 6.82324 6.85931 6.91753 7.04390 7.17438 7.27943 7.29934 7.54535 7.67353 7.84827 7.98308 8.01054 8.21284 8.41779 8.56898 8.83081 8.90662 10.13600 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020618 B = 0.003166 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.712196 B = 8842.172227 C = 9787.343850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.063 3.937 4 C -0.151 4.151 5 C 0.078 3.922 6 H 0.108 0.892 7 N -0.826 5.826 8 C 0.527 3.473 9 O -0.541 6.541 10 N -0.601 5.601 11 C 0.114 3.886 12 C -0.069 4.069 13 C -0.171 4.171 14 C 0.112 3.888 15 C -0.460 4.460 16 H 0.080 0.920 17 C 0.077 3.923 18 N -0.792 5.792 19 Si 0.906 3.094 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.265 1.265 23 C -0.164 4.164 24 C -0.103 4.103 25 C -0.237 4.237 26 C -0.080 4.080 27 C 0.156 3.844 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.351 0.649 36 H 0.343 0.657 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.281 0.719 42 H 0.117 0.883 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.442 -5.286 -8.528 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C -0.014 4.014 4 C -0.191 4.191 5 C -0.037 4.037 6 H 0.125 0.875 7 N -0.358 5.358 8 C 0.314 3.686 9 O -0.418 6.418 10 N -0.333 5.333 11 C -0.008 4.008 12 C -0.107 4.107 13 C -0.172 4.172 14 C 0.110 3.890 15 C -0.489 4.489 16 H 0.098 0.902 17 C -0.141 4.141 18 N -0.417 5.417 19 Si 0.730 3.270 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.189 1.189 23 C -0.183 4.183 24 C -0.121 4.121 25 C -0.256 4.256 26 C -0.081 4.081 27 C 0.033 3.967 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.166 0.834 36 H 0.157 0.843 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.134 0.866 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.421 -4.828 -8.542 15.057 hybrid contribution -0.177 -0.141 0.251 0.338 sum -11.598 -4.969 -8.292 15.098 Atomic orbital electron populations 1.22760 0.80845 1.02878 1.00078 1.87893 1.19847 1.27730 1.95424 1.22515 0.93499 0.85001 1.00403 1.22272 0.93875 0.97972 1.04982 1.21333 0.93278 0.93493 0.95609 0.87473 1.58511 1.19351 1.54586 1.03366 1.20086 0.89539 0.76201 0.82762 1.90644 1.63788 1.50598 1.36764 1.48051 1.08233 1.70440 1.06619 1.21709 0.78998 0.99291 1.00805 1.20426 0.99624 0.96669 0.93968 1.19224 0.94704 1.05925 0.97358 1.17587 0.92599 0.88485 0.90370 1.19567 0.98236 1.37560 0.93542 0.90212 1.25905 0.99129 0.94120 0.94955 1.69817 1.37761 1.33199 1.00904 0.86401 0.81041 0.81342 0.78196 1.18819 1.20368 1.18927 1.21233 0.92868 1.04152 1.00091 1.20570 0.96000 0.99025 0.96535 1.20135 0.99178 1.10781 0.95552 1.19058 0.94586 1.00100 0.94309 1.20525 0.93607 0.99262 0.83272 0.94082 0.89542 0.93846 0.92629 0.93384 0.90356 0.89656 0.83379 0.84290 0.91374 0.89599 0.92596 0.90105 0.90806 0.86553 0.89364 0.89522 0.91319 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.06 10.70 -35.23 -0.38 -4.43 16 3 C 0.06 0.56 5.71 37.16 0.21 0.77 16 4 C -0.15 -1.60 5.11 -26.73 -0.14 -1.74 16 5 C 0.08 0.96 2.38 -68.87 -0.16 0.80 16 6 H 0.11 1.29 6.45 -51.93 -0.34 0.95 16 7 N -0.83 -9.46 8.94 -5.66 -0.05 -9.51 16 8 C 0.53 8.70 6.97 -10.98 -0.08 8.63 16 9 O -0.54 -10.50 15.73 5.56 0.09 -10.42 16 10 N -0.60 -10.14 2.94 -174.39 -0.51 -10.66 16 11 C 0.11 2.01 6.45 -3.75 -0.02 1.99 16 12 C -0.07 -1.41 4.97 -28.06 -0.14 -1.55 16 13 C -0.17 -3.89 5.81 -103.91 -0.60 -4.50 16 14 C 0.11 2.84 5.58 -106.67 -0.59 2.25 16 15 C -0.46 -11.64 8.03 -37.74 -0.30 -11.95 16 16 H 0.08 1.95 6.83 -52.48 -0.36 1.59 16 17 C 0.08 1.87 5.13 -17.34 -0.09 1.78 16 18 N -0.79 -19.87 10.98 55.55 0.61 -19.26 16 19 Si 0.91 18.31 29.59 -169.99 -5.03 13.28 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 C -0.16 -4.11 8.66 -38.98 -0.34 -4.45 16 24 C -0.10 -2.30 10.03 -39.77 -0.40 -2.70 16 25 C -0.24 -4.90 9.63 -39.15 -0.38 -5.27 16 26 C -0.08 -1.64 5.82 -104.60 -0.61 -2.25 16 27 C 0.16 2.52 5.27 -5.05 -0.03 2.50 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.36 6.87 -51.93 -0.36 0.00 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.95 7.36 -51.93 -0.38 0.57 16 35 H 0.35 4.04 8.58 -39.29 -0.34 3.70 16 36 H 0.34 2.91 7.55 -39.29 -0.30 2.61 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.50 7.07 -51.93 -0.37 1.13 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.67 6.99 -51.93 -0.36 1.30 16 41 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 42 H 0.12 3.03 6.21 -52.49 -0.33 2.70 16 43 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 44 H 0.09 1.55 8.05 -52.49 -0.42 1.12 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.08 1.09 5.64 -51.92 -0.29 0.80 16 LS Contribution 365.86 15.07 5.51 5.51 Total: -1.00 -29.41 365.86 -9.09 -38.50 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -6.78 Total: 11.34 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -2.56 Total: -14.36 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.05 Total: -39.42 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.29 Total: -14.85 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.41 -9.09 -38.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884445703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.340 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds