Wall clock time and date at job start Tue Mar 31 2020 12:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35675 * 116.99816 * 2 1 4 4 C 1.38920 * 119.68188 * 180.02562 * 3 2 1 5 5 C 1.38385 * 119.11073 * 179.97438 * 4 3 2 6 6 C 1.38836 * 118.48260 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.35163 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46918 * 90.00150 * 7 6 5 9 9 C 1.50703 * 109.46918 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00033 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99674 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99927 * 179.97438 * 11 9 8 13 13 H 1.09005 * 110.01691 * 325.06527 * 12 11 9 14 14 C 1.54266 * 110.03104 * 86.45288 * 12 11 9 15 15 C 1.54887 * 104.19888 * 95.72340 * 14 12 11 16 16 C 1.54893 * 102.74533 * 37.94403 * 15 14 12 17 17 H 1.08998 * 110.60430 * 80.79077 * 16 15 14 18 18 C 1.50699 * 110.48463 * 203.38295 * 16 15 14 19 19 H 1.07993 * 120.00397 * 114.77443 * 18 16 15 20 20 C 1.37879 * 119.99925 * 294.76845 * 18 16 15 21 21 N 1.31509 * 120.00237 * 179.97438 * 20 18 16 22 22 Si 1.86801 * 119.99643 * 0.02562 * 20 18 16 23 23 H 1.48499 * 109.47366 * 89.99947 * 22 20 18 24 24 H 1.48504 * 109.46876 * 209.99613 * 22 20 18 25 25 H 1.48499 * 109.47275 * 329.99190 * 22 20 18 26 26 C 1.53872 * 110.07639 * 203.64246 * 12 11 9 27 27 C 1.38040 * 119.28782 * 0.25558 * 6 5 4 28 28 N 1.31959 * 120.83933 * 359.44940 * 27 6 5 29 29 H 1.08998 * 109.46915 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47219 * 299.99928 * 1 2 3 31 31 H 1.09001 * 109.46970 * 60.00208 * 1 2 3 32 32 H 1.07990 * 120.44675 * 0.02562 * 4 3 2 33 33 H 1.07994 * 120.75818 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.46834 * 329.99968 * 7 6 5 35 35 H 1.09000 * 109.46675 * 210.00292 * 7 6 5 36 36 H 1.09001 * 109.46909 * 59.99831 * 8 7 6 37 37 H 1.09002 * 109.46855 * 299.99817 * 8 7 6 38 38 H 0.97003 * 120.00404 * 359.97438 * 11 9 8 39 39 H 1.09001 * 110.48620 * 214.40547 * 14 12 11 40 40 H 1.09004 * 110.48798 * 337.04381 * 14 12 11 41 41 H 1.09001 * 110.75744 * 156.25305 * 15 14 12 42 42 H 1.09000 * 110.75698 * 279.63123 * 15 14 12 43 43 H 0.97002 * 119.99742 * 180.02562 * 21 20 18 44 44 H 1.09002 * 110.03208 * 359.97438 * 26 12 11 45 45 H 1.09000 * 110.03462 * 121.36004 * 26 12 11 46 46 H 1.08002 * 119.57964 * 179.72705 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 -0.0005 5 6 4.0485 2.5132 -0.0011 6 6 3.2504 3.6492 -0.0016 7 6 3.8768 5.0199 -0.0016 8 6 4.0892 5.4835 -1.4441 9 6 4.7150 6.8544 -1.4441 10 8 4.9658 7.4065 -0.3938 11 7 4.9949 7.4673 -2.6113 12 6 5.6027 8.8003 -2.6114 13 1 5.2236 9.3833 -1.7720 14 6 7.1381 8.6810 -2.5213 15 6 7.6125 8.7622 -3.9935 16 6 6.6539 9.8147 -4.6039 17 1 6.9879 10.8236 -4.3620 18 6 6.5567 9.6363 -6.0971 19 1 5.6199 9.3411 -6.5459 20 6 7.6640 9.8501 -6.8904 21 7 7.5794 9.6940 -8.1935 22 14 9.2847 10.3602 -6.1141 23 1 10.0723 9.1488 -5.7713 24 1 10.0521 11.1945 -7.0734 25 1 9.0180 11.1428 -4.8805 26 6 5.2949 9.5211 -3.9355 27 6 1.8771 3.5096 0.0038 28 7 1.3186 2.3141 -0.0015 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0229 0.3696 -0.0014 33 1 5.1254 2.5947 -0.0019 34 1 4.8371 4.9805 0.5126 35 1 3.2181 5.7203 0.5119 36 1 3.1289 5.5227 -1.9583 37 1 4.7479 4.7830 -1.9576 38 1 4.7939 7.0259 -3.4514 39 1 7.5515 9.5060 -1.9411 40 1 7.4213 7.7247 -2.0814 41 1 8.6462 9.1037 -4.0479 42 1 7.4960 7.7992 -4.4906 43 1 8.3585 9.8440 -8.7515 44 1 4.6933 8.8791 -4.5791 45 1 4.7656 10.4535 -3.7389 46 1 1.2518 4.3902 0.0079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891288363.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:02 Heat of formation + Delta-G solvation = -57.783136 kcal Electronic energy + Delta-G solvation = -25523.619446 eV Core-core repulsion = 21798.768150 eV Total energy + Delta-G solvation = -3724.851296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.98108 -39.78311 -38.39264 -37.38275 -34.36773 -33.64339 -32.52772 -32.09507 -30.07975 -28.52784 -27.91241 -27.36755 -24.94026 -23.77608 -23.48440 -21.94859 -20.52864 -19.66481 -19.14853 -18.72700 -17.46117 -17.10704 -16.98986 -16.31759 -15.72852 -15.46531 -15.23420 -14.95736 -14.80725 -14.56866 -14.25751 -13.87746 -13.56912 -13.33445 -13.16641 -12.85698 -12.59502 -12.47645 -12.36344 -12.29654 -11.87348 -11.48652 -11.40171 -11.26117 -11.20591 -10.96086 -10.59260 -10.23575 -10.19457 -9.98016 -9.93240 -9.81420 -9.60105 -9.48439 -9.05179 -8.72364 -8.67600 -8.56802 -6.10788 -4.09831 0.81678 0.93623 2.76822 2.78130 3.26735 3.32469 3.36470 3.38117 3.51513 3.99444 4.39571 4.45780 4.60796 4.65113 4.75989 4.87747 4.95836 4.97185 5.00686 5.10005 5.17565 5.27519 5.33420 5.34283 5.40994 5.46776 5.58316 5.60290 5.67744 5.89420 6.06123 6.09187 6.11346 6.13592 6.29561 6.37462 6.50029 6.52819 6.67386 6.82641 6.89175 7.02577 7.07567 7.47356 7.51870 7.73115 7.76468 8.41033 8.47975 8.92110 9.52393 11.02245 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023221 B = 0.002097 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.532825 B =13350.634266 C =13755.854510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.312 3.688 4 C -0.187 4.187 5 C -0.037 4.037 6 C -0.168 4.168 7 C -0.054 4.054 8 C -0.138 4.138 9 C 0.509 3.491 10 O -0.550 6.550 11 N -0.716 5.716 12 C 0.139 3.861 13 H 0.079 0.921 14 C -0.132 4.132 15 C -0.127 4.127 16 C 0.011 3.989 17 H 0.034 0.966 18 C -0.510 4.510 19 H 0.073 0.927 20 C 0.070 3.930 21 N -0.902 5.902 22 Si 0.880 3.120 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.264 1.264 26 C -0.112 4.112 27 C 0.143 3.857 28 N -0.539 5.539 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.402 0.598 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.066 0.934 43 H 0.263 0.737 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.651 -16.212 16.998 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.218 6.218 3 C 0.133 3.867 4 C -0.208 4.208 5 C -0.062 4.062 6 C -0.171 4.171 7 C -0.092 4.092 8 C -0.178 4.178 9 C 0.295 3.705 10 O -0.428 6.428 11 N -0.366 5.366 12 C 0.035 3.965 13 H 0.097 0.903 14 C -0.170 4.170 15 C -0.165 4.165 16 C -0.008 4.008 17 H 0.052 0.948 18 C -0.548 4.548 19 H 0.091 0.909 20 C -0.131 4.131 21 N -0.540 5.540 22 Si 0.709 3.291 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.189 1.189 26 C -0.150 4.150 27 C -0.013 4.013 28 N -0.262 5.262 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.237 0.763 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.196 -16.151 17.562 26.355 hybrid contribution 1.543 0.136 -0.269 1.572 sum -9.653 -16.015 17.293 25.469 Atomic orbital electron populations 1.22852 0.77202 1.02904 1.02506 1.86233 1.22956 1.24660 1.87916 1.19867 0.89474 0.84716 0.92645 1.21079 0.92000 0.99610 1.08075 1.21390 1.00713 0.90709 0.93420 1.20792 0.94743 0.96545 1.04977 1.20171 1.02014 0.91325 0.95722 1.21693 1.02627 0.94660 0.98809 1.20601 0.78369 0.87501 0.84018 1.90681 1.53948 1.66839 1.31357 1.46331 1.62561 1.19370 1.08382 1.21737 0.92981 0.82329 0.99450 0.90263 1.22761 0.94976 1.00849 0.98456 1.22926 0.98930 1.01434 0.93239 1.19985 0.90410 0.94500 0.95941 0.94807 1.21042 0.98239 1.46679 0.88830 0.90900 1.25005 0.98836 0.94667 0.94635 1.69900 1.30428 1.49734 1.03963 0.86895 0.84125 0.78922 0.79118 1.20439 1.22157 1.18915 1.22421 1.00086 0.99082 0.93445 1.22347 0.92312 0.93575 0.93030 1.67325 1.40921 0.98806 1.19107 0.88675 0.92335 0.92239 0.84112 0.83951 0.89945 0.89873 0.88846 0.88835 0.76337 0.91793 0.92553 0.93608 0.91540 0.92694 0.91272 0.92260 0.82309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.31 -3.04 10.48 -18.73 -0.20 -3.23 16 3 C 0.31 3.21 7.49 -17.12 -0.13 3.08 16 4 C -0.19 -1.63 10.04 -39.27 -0.39 -2.02 16 5 C -0.04 -0.29 9.85 -39.31 -0.39 -0.68 16 6 C -0.17 -1.42 5.15 -104.47 -0.54 -1.96 16 7 C -0.05 -0.47 4.66 -27.88 -0.13 -0.60 16 8 C -0.14 -1.25 5.68 -27.88 -0.16 -1.41 16 9 C 0.51 6.72 7.82 -10.99 -0.09 6.63 16 10 O -0.55 -9.15 15.66 5.56 0.09 -9.07 16 11 N -0.72 -9.82 5.04 -52.72 -0.27 -10.08 16 12 C 0.14 2.26 3.22 -66.81 -0.22 2.04 16 13 H 0.08 1.32 7.61 -51.93 -0.39 0.92 16 14 C -0.13 -2.28 6.53 -25.07 -0.16 -2.44 16 15 C -0.13 -2.58 5.30 -24.74 -0.13 -2.72 16 16 C 0.01 0.23 2.28 -90.11 -0.21 0.03 16 17 H 0.03 0.78 7.06 -51.93 -0.37 0.41 16 18 C -0.51 -13.59 9.04 -34.44 -0.31 -13.90 16 19 H 0.07 2.09 7.79 -52.49 -0.41 1.68 16 20 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 21 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 22 Si 0.88 21.34 24.65 -169.99 -4.19 17.15 16 23 H -0.28 -6.61 7.10 56.52 0.40 -6.20 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.26 -6.15 6.47 56.52 0.37 -5.78 16 26 C -0.11 -2.03 6.13 -25.61 -0.16 -2.19 16 27 C 0.14 1.28 10.85 -17.57 -0.19 1.09 16 28 N -0.54 -5.62 9.22 -13.33 -0.12 -5.75 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.08 0.77 8.05 -51.93 -0.42 0.36 16 35 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.40 4.89 8.30 -40.82 -0.34 4.55 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 41 H 0.05 0.96 5.28 -51.93 -0.27 0.69 16 42 H 0.07 1.37 8.05 -51.93 -0.42 0.96 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.07 1.25 7.12 -51.93 -0.37 0.88 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -32.51 374.32 -7.74 -40.25 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.22 Total: 3.11 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -2.24 Total: -11.86 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.38 Total: -41.99 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.11 Total: -12.30 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.19 Total: 17.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.51 -7.74 -40.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891288363.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.535 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds