Wall clock time and date at job start Tue Mar 31 2020 12:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35675 * 116.99816 * 2 1 4 4 C 1.38920 * 119.68188 * 180.02562 * 3 2 1 5 5 C 1.38385 * 119.11073 * 179.97438 * 4 3 2 6 6 C 1.38836 * 118.48260 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.35163 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46918 * 90.00150 * 7 6 5 9 9 C 1.50703 * 109.46918 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00033 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99674 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99927 * 179.97438 * 11 9 8 13 13 H 1.09005 * 110.01691 * 325.06527 * 12 11 9 14 14 C 1.54266 * 110.03104 * 86.45288 * 12 11 9 15 15 C 1.54887 * 104.19888 * 95.72340 * 14 12 11 16 16 C 1.54893 * 102.74533 * 37.94403 * 15 14 12 17 17 H 1.08998 * 110.60430 * 80.79077 * 16 15 14 18 18 C 1.50699 * 110.48463 * 203.38295 * 16 15 14 19 19 H 1.07993 * 120.00397 * 114.77443 * 18 16 15 20 20 C 1.37879 * 119.99925 * 294.76845 * 18 16 15 21 21 N 1.31509 * 120.00237 * 179.97438 * 20 18 16 22 22 Si 1.86801 * 119.99643 * 0.02562 * 20 18 16 23 23 H 1.48499 * 109.47366 * 89.99947 * 22 20 18 24 24 H 1.48504 * 109.46876 * 209.99613 * 22 20 18 25 25 H 1.48499 * 109.47275 * 329.99190 * 22 20 18 26 26 C 1.53872 * 110.07639 * 203.64246 * 12 11 9 27 27 C 1.38040 * 119.28782 * 0.25558 * 6 5 4 28 28 N 1.31959 * 120.83933 * 359.44940 * 27 6 5 29 29 H 1.08998 * 109.46915 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47219 * 299.99928 * 1 2 3 31 31 H 1.09001 * 109.46970 * 60.00208 * 1 2 3 32 32 H 1.07990 * 120.44675 * 0.02562 * 4 3 2 33 33 H 1.07994 * 120.75818 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.46834 * 329.99968 * 7 6 5 35 35 H 1.09000 * 109.46675 * 210.00292 * 7 6 5 36 36 H 1.09001 * 109.46909 * 59.99831 * 8 7 6 37 37 H 1.09002 * 109.46855 * 299.99817 * 8 7 6 38 38 H 0.97003 * 120.00404 * 359.97438 * 11 9 8 39 39 H 1.09001 * 110.48620 * 214.40547 * 14 12 11 40 40 H 1.09004 * 110.48798 * 337.04381 * 14 12 11 41 41 H 1.09001 * 110.75744 * 156.25305 * 15 14 12 42 42 H 1.09000 * 110.75698 * 279.63123 * 15 14 12 43 43 H 0.97002 * 119.99742 * 180.02562 * 21 20 18 44 44 H 1.09002 * 110.03208 * 359.97438 * 26 12 11 45 45 H 1.09000 * 110.03462 * 121.36004 * 26 12 11 46 46 H 1.08002 * 119.57964 * 179.72705 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 -0.0005 5 6 4.0485 2.5132 -0.0011 6 6 3.2504 3.6492 -0.0016 7 6 3.8768 5.0199 -0.0016 8 6 4.0892 5.4835 -1.4441 9 6 4.7150 6.8544 -1.4441 10 8 4.9658 7.4065 -0.3938 11 7 4.9949 7.4673 -2.6113 12 6 5.6027 8.8003 -2.6114 13 1 5.2236 9.3833 -1.7720 14 6 7.1381 8.6810 -2.5213 15 6 7.6125 8.7622 -3.9935 16 6 6.6539 9.8147 -4.6039 17 1 6.9879 10.8236 -4.3620 18 6 6.5567 9.6363 -6.0971 19 1 5.6199 9.3411 -6.5459 20 6 7.6640 9.8501 -6.8904 21 7 7.5794 9.6940 -8.1935 22 14 9.2847 10.3602 -6.1141 23 1 10.0723 9.1488 -5.7713 24 1 10.0521 11.1945 -7.0734 25 1 9.0180 11.1428 -4.8805 26 6 5.2949 9.5211 -3.9355 27 6 1.8771 3.5096 0.0038 28 7 1.3186 2.3141 -0.0015 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0229 0.3696 -0.0014 33 1 5.1254 2.5947 -0.0019 34 1 4.8371 4.9805 0.5126 35 1 3.2181 5.7203 0.5119 36 1 3.1289 5.5227 -1.9583 37 1 4.7479 4.7830 -1.9576 38 1 4.7939 7.0259 -3.4514 39 1 7.5515 9.5060 -1.9411 40 1 7.4213 7.7247 -2.0814 41 1 8.6462 9.1037 -4.0479 42 1 7.4960 7.7992 -4.4906 43 1 8.3585 9.8440 -8.7515 44 1 4.6933 8.8791 -4.5791 45 1 4.7656 10.4535 -3.7389 46 1 1.2518 4.3902 0.0079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891288363.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:01 Heat of formation + Delta-G solvation = -80.129919 kcal Electronic energy + Delta-G solvation = -25524.588475 eV Core-core repulsion = 21798.768150 eV Total energy + Delta-G solvation = -3725.820325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64722 -40.90841 -39.14146 -38.71819 -35.22958 -35.06818 -33.92518 -33.15281 -30.94794 -30.10650 -29.15393 -28.14453 -25.95789 -25.13156 -24.36543 -22.74969 -21.68479 -20.98014 -20.70267 -19.36564 -18.93623 -18.13098 -18.07719 -17.02002 -16.92541 -16.82832 -16.29329 -15.96445 -15.86520 -15.43586 -15.21785 -14.90527 -14.77048 -14.40072 -14.21673 -14.11727 -13.97459 -13.88393 -13.24246 -13.08632 -12.88975 -12.85565 -12.54992 -12.51302 -12.29639 -12.04250 -11.96617 -11.81715 -11.60885 -11.50223 -11.28513 -11.02050 -10.88205 -10.71476 -10.66553 -10.58067 -9.91953 -9.35005 -8.26273 -6.28287 0.16003 0.29314 1.34351 1.38393 1.47796 1.75811 2.16990 2.34999 2.36394 2.78284 3.09503 3.37070 3.69353 3.86802 3.90115 3.97198 4.01730 4.08024 4.16310 4.24123 4.36083 4.40813 4.42843 4.46991 4.64954 4.68103 4.72559 4.74487 4.76831 4.80325 4.94209 4.96454 4.99100 5.02166 5.03154 5.14368 5.22533 5.28523 5.41233 5.47737 5.51987 5.67144 5.69239 5.82824 6.24543 6.35043 6.69851 6.78604 6.85260 7.36544 7.37519 8.90065 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023221 B = 0.002097 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.532825 B =13350.634266 C =13755.854510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.291 3.709 4 C -0.193 4.193 5 C -0.036 4.036 6 C -0.165 4.165 7 C -0.046 4.046 8 C -0.129 4.129 9 C 0.510 3.490 10 O -0.584 6.584 11 N -0.714 5.714 12 C 0.149 3.851 13 H 0.081 0.919 14 C -0.123 4.123 15 C -0.124 4.124 16 C 0.003 3.997 17 H 0.029 0.971 18 C -0.506 4.506 19 H 0.039 0.961 20 C 0.012 3.988 21 N -0.951 5.951 22 Si 0.938 3.062 23 H -0.268 1.268 24 H -0.299 1.299 25 H -0.246 1.246 26 C -0.105 4.105 27 C 0.134 3.866 28 N -0.557 5.557 29 H 0.120 0.880 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.156 0.844 33 H 0.165 0.835 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.410 0.590 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.040 0.960 42 H 0.058 0.942 43 H 0.263 0.737 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.250 -16.917 18.843 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.231 6.231 3 C 0.113 3.887 4 C -0.213 4.213 5 C -0.061 4.061 6 C -0.168 4.168 7 C -0.084 4.084 8 C -0.168 4.168 9 C 0.298 3.702 10 O -0.464 6.464 11 N -0.366 5.366 12 C 0.044 3.956 13 H 0.099 0.901 14 C -0.161 4.161 15 C -0.161 4.161 16 C -0.016 4.016 17 H 0.048 0.952 18 C -0.544 4.544 19 H 0.057 0.943 20 C -0.185 4.185 21 N -0.592 5.592 22 Si 0.764 3.236 23 H -0.193 1.193 24 H -0.226 1.226 25 H -0.170 1.170 26 C -0.143 4.143 27 C -0.022 4.022 28 N -0.280 5.280 29 H 0.138 0.862 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.173 0.827 33 H 0.182 0.818 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.246 0.754 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.816 -16.873 19.420 27.907 hybrid contribution 1.314 0.344 -0.872 1.614 sum -9.502 -16.530 18.548 26.600 Atomic orbital electron populations 1.23008 0.76092 1.04476 1.02081 1.86213 1.24180 1.24743 1.87998 1.20198 0.90280 0.84865 0.93371 1.21328 0.91623 1.00609 1.07730 1.21675 1.01815 0.90192 0.92388 1.20756 0.94561 0.96498 1.04969 1.20065 1.01673 0.91289 0.95381 1.21696 1.03473 0.92204 0.99461 1.21226 0.77452 0.88475 0.83000 1.90672 1.55343 1.67966 1.32452 1.46281 1.62456 1.18583 1.09258 1.21460 0.92572 0.83546 0.98029 0.90072 1.22696 0.95445 1.01763 0.96213 1.22775 0.98063 1.00113 0.95189 1.19978 0.93462 0.94899 0.93220 0.95250 1.21361 0.96633 1.44940 0.91484 0.94306 1.25819 1.02569 0.95161 0.94940 1.70045 1.31495 1.52049 1.05604 0.85958 0.79897 0.79017 0.78700 1.19347 1.22617 1.17025 1.22292 0.97922 0.99958 0.94152 1.22662 0.92963 0.93677 0.92867 1.67323 1.41566 0.99316 1.19825 0.86157 0.92653 0.92724 0.82668 0.81797 0.90387 0.90311 0.87026 0.87131 0.75370 0.90928 0.91626 0.94133 0.92341 0.92777 0.91556 0.91295 0.80827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.38 113.37 1.18 1.68 16 2 O -0.32 -6.13 10.48 -89.92 -0.94 -7.08 16 3 C 0.29 5.74 7.49 84.79 0.63 6.38 16 4 C -0.19 -3.05 10.04 22.47 0.23 -2.82 16 5 C -0.04 -0.48 9.85 22.45 0.22 -0.26 16 6 C -0.17 -2.44 5.15 -19.77 -0.10 -2.55 16 7 C -0.05 -0.69 4.66 29.85 0.14 -0.55 16 8 C -0.13 -1.96 5.68 29.85 0.17 -1.79 16 9 C 0.51 12.14 7.82 87.66 0.69 12.83 16 10 O -0.58 -18.14 15.66 -3.03 -0.05 -18.19 16 11 N -0.71 -17.85 5.04 -439.10 -2.21 -20.07 16 12 C 0.15 4.48 3.22 45.71 0.15 4.63 16 13 H 0.08 2.49 7.61 -2.38 -0.02 2.47 16 14 C -0.12 -3.89 6.53 31.67 0.21 -3.69 16 15 C -0.12 -4.77 5.30 31.89 0.17 -4.60 16 16 C 0.00 0.15 2.28 -10.46 -0.02 0.12 16 17 H 0.03 1.30 7.06 -2.39 -0.02 1.28 16 18 C -0.51 -27.24 9.04 25.60 0.23 -27.01 16 19 H 0.04 2.29 7.79 -2.91 -0.02 2.27 16 20 C 0.01 0.67 5.46 84.66 0.46 1.13 16 21 N -0.95 -58.13 13.96 21.45 0.30 -57.83 16 22 Si 0.94 43.67 24.65 68.60 1.69 45.36 16 23 H -0.27 -11.95 7.10 99.48 0.71 -11.25 16 24 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 25 H -0.25 -10.65 6.47 99.48 0.64 -10.01 16 26 C -0.11 -3.65 6.13 31.32 0.19 -3.46 16 27 C 0.13 2.20 10.85 84.63 0.92 3.11 16 28 N -0.56 -11.15 9.22 -308.96 -2.85 -14.00 16 29 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.75 8.10 -2.39 -0.02 0.73 16 31 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 32 H 0.16 1.88 8.06 -2.92 -0.02 1.86 16 33 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.08 1.28 8.05 -2.38 -0.02 1.26 16 35 H 0.08 1.28 8.05 -2.39 -0.02 1.26 16 36 H 0.11 1.35 8.14 -2.39 -0.02 1.34 16 37 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.41 9.01 8.30 -92.71 -0.77 8.24 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.07 1.98 8.04 -2.38 -0.02 1.97 16 41 H 0.04 1.60 5.28 -2.39 -0.01 1.59 16 42 H 0.06 2.33 8.05 -2.39 -0.02 2.31 16 43 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.07 2.33 7.12 -2.39 -0.02 2.31 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -70.53 374.32 1.54 -68.99 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.15 Total: 19.66 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 5.45 Total: -16.83 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -4.76 Total: -91.90 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.99 Total: -25.27 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.69 Total: 45.36 kcal Total: -70.53 1.54 -68.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891288363.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.143 kcal (2) G-P(sol) polarization free energy of solvation -70.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds