Wall clock time and date at job start Tue Mar 31 2020 12:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00009 * 2 1 4 4 C 1.50696 * 108.79418 * 303.27179 * 3 2 1 5 5 O 1.21278 * 120.00202 * 147.98374 * 4 3 2 6 6 N 1.34780 * 119.99770 * 327.98430 * 4 3 2 7 7 C 1.39471 * 119.99610 * 185.83773 * 6 4 3 8 8 C 1.38594 * 119.58218 * 337.52519 * 7 6 4 9 9 C 1.40812 * 118.79187 * 179.74109 * 8 7 6 10 10 C 1.41544 * 120.99502 * 180.23838 * 9 8 7 11 11 H 1.08002 * 120.00364 * 209.08961 * 10 9 8 12 12 C 1.40030 * 119.99906 * 29.08244 * 10 9 8 13 13 N 1.30739 * 120.00212 * 8.54241 * 12 10 9 14 14 Si 1.86805 * 120.00002 * 188.54060 * 12 10 9 15 15 H 1.48500 * 109.47129 * 60.00116 * 14 12 10 16 16 H 1.48493 * 109.47061 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46891 * 299.99890 * 14 12 10 18 18 C 1.41169 * 118.00832 * 0.52130 * 9 8 7 19 19 C 1.37594 * 119.01937 * 359.73721 * 18 9 8 20 20 N 1.32088 * 121.10436 * 359.97438 * 19 18 9 21 21 C 1.45543 * 108.89572 * 184.71311 * 3 2 1 22 22 C 1.54246 * 112.32576 * 301.23026 * 21 3 2 23 23 C 1.50552 * 108.48456 * 279.88332 * 22 21 3 24 24 C 1.54059 * 112.41808 * 94.26717 * 23 22 21 25 25 C 1.54063 * 112.81663 * 318.28213 * 24 23 22 26 26 C 1.50482 * 112.49403 * 318.28203 * 25 24 23 27 27 H 1.09000 * 109.47124 * 185.15291 * 1 2 3 28 28 H 1.08996 * 109.47268 * 305.16114 * 1 2 3 29 29 H 1.09007 * 109.46729 * 65.15285 * 1 2 3 30 30 H 0.96999 * 119.99873 * 5.83246 * 6 4 3 31 31 H 1.08001 * 120.60362 * 0.02562 * 8 7 6 32 32 H 0.96997 * 120.00462 * 180.02562 * 13 12 10 33 33 H 1.08007 * 120.49494 * 179.75850 * 18 9 8 34 34 H 1.07998 * 119.44509 * 180.02562 * 19 18 9 35 35 H 1.09001 * 108.89720 * 61.93048 * 21 3 2 36 36 H 1.08997 * 108.89584 * 180.52907 * 21 3 2 37 37 H 1.09000 * 109.62652 * 39.67888 * 22 21 3 38 38 H 1.08999 * 109.62941 * 160.25389 * 22 21 3 39 39 H 1.08995 * 108.92268 * 333.50538 * 23 22 21 40 40 H 1.09006 * 108.83354 * 214.96863 * 23 22 21 41 41 H 1.09000 * 108.81753 * 197.42003 * 24 23 22 42 42 H 1.09003 * 108.81328 * 79.13950 * 24 23 22 43 43 H 1.09005 * 108.87628 * 197.50835 * 25 24 23 44 44 H 1.08995 * 108.87971 * 79.05630 * 25 24 23 45 45 H 1.08998 * 109.62425 * 334.44488 * 26 25 24 46 46 H 1.09002 * 109.78958 * 213.95942 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4927 2.0673 -1.1928 5 8 1.3459 3.2694 -1.1274 6 7 1.1931 1.4127 -2.3322 7 6 0.8309 2.1287 -3.4730 8 6 0.3301 3.4145 -3.3436 9 6 -0.0251 4.1242 -4.5067 10 6 -0.5365 5.4418 -4.4290 11 1 -1.2172 5.8024 -5.1859 12 6 -0.1597 6.2777 -3.3706 13 7 0.7873 5.9062 -2.5494 14 14 -1.0104 7.9236 -3.1320 15 1 -2.4629 7.7034 -2.9157 16 1 -0.4324 8.6128 -1.9505 17 1 -0.8116 8.7633 -4.3406 18 6 0.1383 3.4801 -5.7522 19 6 0.6386 2.1986 -5.7804 20 7 0.9655 1.5691 -4.6662 21 6 3.4557 1.1778 -0.1131 22 6 4.0626 0.3492 1.0376 23 6 4.1898 1.2350 2.2482 24 6 2.9762 1.1205 3.1902 25 6 1.6352 1.0693 2.4334 26 6 1.5840 2.0420 1.2864 27 1 -0.3633 -1.0235 0.0923 28 1 -0.3633 0.5918 0.8401 29 1 -0.3633 0.4319 -0.9326 30 1 1.2294 0.4438 -2.3588 31 1 0.2186 3.8655 -2.3686 32 1 1.0480 6.4851 -1.8160 33 1 -0.1251 3.9858 -6.6695 34 1 0.7668 1.6995 -6.7295 35 1 3.6943 0.6942 -1.0604 36 1 3.8997 2.1732 -0.1037 37 1 3.4101 -0.4936 1.2655 38 1 5.0477 -0.0152 0.7464 39 1 4.2854 2.2701 1.9203 40 1 5.0895 0.9548 2.7963 41 1 2.9690 1.9801 3.8604 42 1 3.0783 0.2136 3.7863 43 1 0.8287 1.3014 3.1290 44 1 1.4864 0.0609 2.0475 45 1 2.2667 2.8699 1.4777 46 1 0.5694 2.4233 1.1709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934858021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:00 Heat of formation + Delta-G solvation = -47.100284 kcal Electronic energy + Delta-G solvation = -28314.772879 eV Core-core repulsion = 24590.384826 eV Total energy + Delta-G solvation = -3724.388053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08465 -38.86482 -37.37113 -36.31029 -34.34621 -33.50599 -32.52716 -31.39751 -30.47769 -28.56053 -26.83780 -25.87606 -25.13209 -24.70983 -22.43024 -21.56419 -20.49501 -19.60188 -19.23151 -18.05445 -17.17796 -16.63797 -15.88141 -15.59700 -15.28436 -15.18207 -14.70353 -14.36504 -14.20275 -14.07647 -13.61448 -13.33683 -13.24957 -13.00835 -12.74161 -12.63715 -12.52786 -12.17694 -12.06722 -11.85592 -11.41487 -11.25671 -11.12264 -11.03768 -10.93572 -10.75787 -10.60776 -10.38753 -10.30561 -10.25817 -10.15966 -9.87469 -9.57646 -9.27420 -8.51462 -8.04764 -7.84878 -7.04055 -6.57498 -4.48870 2.55641 2.90166 3.08749 3.10954 3.12849 3.29814 3.53672 3.83320 3.95638 4.56426 4.68715 4.77370 4.80952 5.02876 5.05398 5.19020 5.23358 5.29148 5.39830 5.43289 5.48626 5.67151 5.71005 5.76900 5.81380 5.86838 5.94940 5.98861 6.07876 6.12257 6.15864 6.19095 6.23699 6.38059 6.49173 6.58109 6.78902 6.82445 6.99498 7.10140 7.24222 7.44566 7.63659 7.93080 7.98610 8.37667 8.53209 8.82309 8.85449 8.93958 9.58041 10.25865 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.004488 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.611968 B = 6237.369909 C = 7415.854601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.369 6.369 3 C 0.123 3.877 4 C 0.473 3.527 5 O -0.471 6.471 6 N -0.647 5.647 7 C 0.312 3.688 8 C -0.215 4.215 9 C 0.134 3.866 10 C -0.459 4.459 11 H 0.079 0.921 12 C 0.072 3.928 13 N -0.761 5.761 14 Si 0.910 3.090 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.266 1.266 18 C -0.287 4.287 19 C 0.118 3.882 20 N -0.600 5.600 21 C -0.112 4.112 22 C -0.108 4.108 23 C -0.122 4.122 24 C -0.113 4.113 25 C -0.126 4.126 26 C -0.124 4.124 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.403 0.597 31 H 0.173 0.827 32 H 0.283 0.717 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.099 -9.030 11.303 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.288 6.288 3 C 0.080 3.920 4 C 0.256 3.744 5 O -0.343 6.343 6 N -0.293 5.293 7 C 0.090 3.910 8 C -0.239 4.239 9 C 0.125 3.875 10 C -0.490 4.490 11 H 0.097 0.903 12 C -0.150 4.150 13 N -0.385 5.385 14 Si 0.734 3.266 15 H -0.189 1.189 16 H -0.203 1.203 17 H -0.191 1.191 18 C -0.311 4.311 19 C -0.037 4.037 20 N -0.321 5.321 21 C -0.150 4.150 22 C -0.145 4.145 23 C -0.160 4.160 24 C -0.151 4.151 25 C -0.164 4.164 26 C -0.162 4.162 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.238 0.762 31 H 0.189 0.811 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.140 0.860 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.623 -9.105 11.587 15.175 hybrid contribution -0.776 1.399 -0.109 1.603 sum 2.847 -7.706 11.478 14.115 Atomic orbital electron populations 1.22997 0.81070 1.02944 1.01526 1.87983 1.19911 1.26513 1.94421 1.20546 0.95208 0.83222 0.93013 1.21354 0.79294 0.89057 0.84657 1.90836 1.48511 1.13240 1.81680 1.43242 1.66523 1.10276 1.09299 1.18210 0.97309 0.90522 0.84918 1.22947 1.05559 0.92565 1.02797 1.17814 0.87114 0.92475 0.90070 1.19501 1.25132 0.96323 1.08024 0.90318 1.25983 0.94039 1.00342 0.94590 1.69797 1.20754 1.36322 1.11582 0.86352 0.80408 0.81293 0.78550 1.18935 1.20283 1.19051 1.21886 1.13436 0.97923 0.97853 1.21502 0.96235 0.92127 0.93844 1.66598 1.28108 1.40009 0.97367 1.20497 0.91731 1.02171 1.00583 1.21210 1.00669 0.98715 0.93940 1.21413 0.97558 1.00463 0.96545 1.21875 0.94189 1.01284 0.97707 1.21370 0.96988 1.01356 0.96660 1.21677 1.03079 0.98666 0.92763 0.89290 0.93214 0.93005 0.76193 0.81072 0.90612 0.88122 0.85962 0.90860 0.89770 0.90306 0.91772 0.91940 0.92442 0.92621 0.92495 0.92390 0.89972 0.89821 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.48 101.05 0.96 1.09 16 2 O -0.37 -4.84 7.04 -35.23 -0.25 -5.08 16 3 C 0.12 1.78 0.57 -94.64 -0.05 1.73 16 4 C 0.47 9.16 5.31 -10.99 -0.06 9.10 16 5 O -0.47 -11.04 12.88 5.56 0.07 -10.97 16 6 N -0.65 -13.11 4.32 -11.49 -0.05 -13.16 16 7 C 0.31 7.72 7.49 -154.70 -1.16 6.56 16 8 C -0.21 -5.85 7.53 -38.48 -0.29 -6.14 16 9 C 0.13 3.69 5.57 -106.55 -0.59 3.09 16 10 C -0.46 -12.40 9.13 -37.65 -0.34 -12.74 16 11 H 0.08 2.02 7.86 -52.49 -0.41 1.60 16 12 C 0.07 1.84 5.32 -17.34 -0.09 1.75 16 13 N -0.76 -20.42 10.75 55.55 0.60 -19.82 16 14 Si 0.91 19.07 29.57 -169.99 -5.03 14.04 16 15 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 18 C -0.29 -7.19 9.90 -38.70 -0.38 -7.57 16 19 C 0.12 2.77 11.15 -17.68 -0.20 2.57 16 20 N -0.60 -14.66 10.36 -12.52 -0.13 -14.79 16 21 C -0.11 -1.50 4.12 -29.60 -0.12 -1.62 16 22 C -0.11 -1.14 5.57 -27.30 -0.15 -1.30 16 23 C -0.12 -1.20 5.32 -27.40 -0.15 -1.35 16 24 C -0.11 -1.08 5.85 -25.62 -0.15 -1.23 16 25 C -0.13 -1.35 4.55 -27.43 -0.12 -1.48 16 26 C -0.12 -1.66 3.51 -27.34 -0.10 -1.76 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.57 6.12 -51.93 -0.32 0.25 16 29 H 0.05 0.74 6.15 -51.93 -0.32 0.42 16 30 H 0.40 7.19 7.56 -40.82 -0.31 6.89 16 31 H 0.17 4.87 3.45 -52.70 -0.18 4.69 16 32 H 0.28 7.07 8.29 -40.82 -0.34 6.73 16 33 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 34 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 35 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.08 1.19 7.46 -51.93 -0.39 0.80 16 37 H 0.08 0.85 6.23 -51.93 -0.32 0.53 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.67 6.63 -51.93 -0.34 0.32 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.89 5.05 -51.93 -0.26 0.63 16 45 H 0.08 1.17 6.98 -51.93 -0.36 0.81 16 46 H 0.07 1.07 7.23 -51.93 -0.38 0.69 16 LS Contribution 348.70 15.07 5.25 5.25 Total: -1.00 -30.35 348.70 -9.07 -39.42 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -6.53 Total: 14.40 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -3.00 Total: -9.28 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.42 Total: -47.78 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.18 Total: -16.05 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.35 -9.07 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934858021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.683 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds